Os05g0117500

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Revision as of 10:04, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0117500| Description = Similar to Nudix hydrolase 9 (EC 3.6.1.-) (AtNUDT9)| Version = NM_001061010.1 GI:115461750 GeneID:4337630| Length = ...")
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Gene Name

Os05g0117500

Description

Similar to Nudix hydrolase 9 (EC 3.6.1.-) (AtNUDT9)

Version

NM_001061010.1 GI:115461750 GeneID:4337630

Length

4054 bp

Definition

Oryza sativa Japonica Group Os05g0117500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:900080..904133

Sequence Coding Region

900188..900271,900798..900872,900958..901014,901557..901639,901812..901870
,902232..902380,902637..902774,903250..903408,903539..903634

Expression

GEO Profiles:Os05g0117500

Genome Context

<gbrowseImage1> name=NC_008398:900080..904133 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:900080..904133 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcctccgccgccgccgccgccgaccccggcgcggcgtacaagctcctcctctcctgccccgccggcctccccagatcccgcgtttcggttaaatttgatcagtcattcgatcggattccccatccggatgcagccttggaagaatcaataagtgtgatatggaaccagagacttaagcagaacccgtcgtcgtacagcggcacaaaatttcggtatggaggacacgctgtgcactacaaagatgaaccaaataaggagtattgtgtttcacttcatttgggtctcacagattacagcacatttgtgggaacaaatcttaatccattgtgggagaaatttttggtcccatctgaagatgattctgtgcattgccaacacatgtcgaatccactgggaaatggtgcaattgttcaaacatctgatgaaaagatcatcgtattgcaaagaagctacaatgttggggagtttccaggttactttgtttttcctggaggacattccgagccacaagaaattggaatcttggcacatcaaactgatgaaaaggaccttgctgttctcaacgaaagagtttcccaagagatgtttgatggaatcatccgtgaggtagttgaggaaactggagtgccttctaattcactgacagagcctgtcttcattggaatttctcgccgggagatgaatgttaggccaactgcattcttttttacaaaatgcaacatagattcaggtggagtgcatgaattatattctagagctcaagatggttttgaatctacaaagatgtatgcagtctcagaggaagagctactaggaatgaccgaccgaatgcctggttgccaccgtggtggctttgctctctatgaaatgatgaagactgctgccaaaaaatcatga</cdnaseq>

Protein Sequence

<aaseq>MASAAAAADPGAAYKLLLSCPAGLPRSRVSVKFDQSFDRIPHPD AALEESISVIWNQRLKQNPSSYSGTKFRYGGHAVHYKDEPNKEYCVSLHLGLTDYSTF VGTNLNPLWEKFLVPSEDDSVHCQHMSNPLGNGAIVQTSDEKIIVLQRSYNVGEFPGY FVFPGGHSEPQEIGILAHQTDEKDLAVLNERVSQEMFDGIIREVVEETGVPSNSLTEP VFIGISRREMNVRPTAFFFTKCNIDSGGVHELYSRAQDGFESTKMYAVSEEELLGMTD RMPGCHRGGFALYEMMKTAAKKS</aaseq>

Gene Sequence

<dnaseqindica>109..192#719..793#879..935#1478..1560#1733..1791#2153..2301#2558..2695#3171..3329#3460..3555#gacaccggagagactcaccgcggcagagttgagtactcgccgacgacgaggccggcggctgcgcgccacctcgccgtttccctctccgccgcatccacacgacgacacatggcctccgccgccgccgccgccgaccccggcgcggcgtacaagctcctcctctcctgccccgccggcctccccagatcccgcgtaaccctccttacacaacctctctctctctctctctctctctctctctctctctctctcccggcgtctgattgcatgagcacctgctgatgctgctgttccccggggcccccgattcgacggcggcagcggcaaatctgaccctttctttgcccttttgccgttttttctgcccctcacgctgttcttccaactctttcttggtggcacacgatctagtacagtacataataacaagcaactgcccgatcatttccttttatttttagtattattagagcttattattattcatcactccacatgctcatatggatttgaactaccatgtccatataagagagactttgcaaaaataattgccttttttttagctagctgcttggattgttgtactatatagctactactatcgtgttgactgtgttacggatttctttagcttcttaaggagaaatgctatgatattgtcgatactagttgggggtcgattcgatgattgctcatgttgtatgtggatttgcaggtttcggttaaatttgatcagtcattcgatcggattccccatccggatgcagccttggaagaatcaataagtgtggtataaattgtctgcctatgcacttctagtgattgttgatccaatagcacgcatggatgttgtttatatttctttggtcctgtagatatggaaccagagacttaagcagaacccgtcgtcgtacagcggcacaaaatttcgggtatttacctcctagttatatcttgatattccgttttcctgctccattgtggtgcttgaaattactgccaaacaccttatattgagctcacaccatttttttgatttataaggtgtttacacattttgtgagtataactttgtgttttttcatgaacagtccaatagtatttagatcttatgacacagaaaaggcacctttgaatgcaaatatgaaaacactttcctgtgatcatgaattactgttagttacaatatatttgttatgtcgatagaaaaaaatgttgtaacacaaataaattccattgttcaattttttagacaacataatcacagtcattcccataatctgtcatcatccaaataatctttgccttctctacctaacaacgaatattaagtaggttatggccatttctttagcttgccttgtttctttttgagctgaacaggtgcgattgcaaaaatttctggaatatactgccttcagctgatatctctttaagtactagatttcatactttggcctccaactaatttcagtatggaggacacgctgtgcactacaaagatgaaccaaataaggagtattgtgtttcacttcatttgggtctcacagattacaggttcgcttgggatttcacattctattacaatagctagttacctactcttttggaaaataaattctggcagccatactttctcaactgttttacattgtcgttctaaccttctatgtggtattcccaactaatatctctgtttataacgatgttatttccttgcacatgacagcacatttgtgggaacaaatcttaatccattgtgggagaaatttttggtcccatctgaaggtaactagattttagaaacttaatcacgtgtgctacttagatcagggcctgttttcacctcaaattttccatctttagttccatgttatctcgggagtcaggacttatctttttgtttcattgctttaccttttgagttttgaaaatgtaacttcttaagacatatccatcccatgttgtttcccctaccactctcgtatattgttttcctctatataatgtttaaccttccattatgctgatgaaattactgccccacgaaaaaatattcataaattttcagtacatagcatatgctcatactacatagcacaaatcagccttgagcaaaacagttcctctcacaatctgatctgtttagatgattctgtgcattgccaacacatgtcgaatccactgggaaatggtgcaattgttcaaacatctgatgaaaagatcatcgtattgcaaagaagctacaatgttggggagtttccaggttactttgtttttcctggaggacattccgaggtaaaatttattttttcccctagttagatctatatttggttcagcaaggtgatctaattcttaattttgtattggataactgtatgatatttttctcccaaatgtaatgtaaaaacatctactgagacaaatggtggacctaagttattgaaagtctttggtattttgattctacatgacttacgggattattgattgagtagtcgctcagtaatatacatggttcttatgaaactgaagttcatctgtatatcagccacaagaaattggaatcttggcacatcaaactgatgaaaaggaccttgctgttctcaacgaaagagtttcccaagagatgtttgatggaatcatccgtgaggtagttgaggaaactggagtgccttctaattcactggtaacagacccacctgcactttgtcttgtatacagctaaatactacatcagcagtcagcatataatccatcagcttttttgtgaagtttactggttgatataagggaaaatatgtagtgcaaaccacatatgtagtggaaacttggaaactaccgttggatcgagaaatggacgtccgagattcgtccacgtcaccatgagttaaaatttaactcctagtaaaattttaactcatgagtgaatctgcgagttaaattttaactcagggtgacgtgaacgaatctcgaacgttcatttctcgatccaacggtagtttccaagttttcactatatatgtggtttgcactagatattttcccttgatataagctggcaagttgttatcaaattgttcttttaattgtttctacataccacatacaaggagatttgtatgttttttgggggctaattatccacatttaatttcacccagacagagcctgtcttcattggaatttctcgccgggagatgaatgttaggccaactgcattcttttttacaaaatgcaacatagattcaggtggagtgcatgaattatattctagagctcaagatggttttgaatctacaaagatgtatgcagtctcagaggtgagcttagttgcattagcagcacaattttcttttcttttttttttttggaaaccgaattagcagcacaatttgatccccatgtggctttaggattcctctgaccacaaattgtatgtttgaatcacaggaagagctactaggaatgaccgaccgaatgcctggttgccaccgtggtggctttgctctctatgaaatgatgaagactgctgccaaaaaatcatgaaaatgaacaatagtgatgtaagtgcgcattcagatcatcttatgccaaacacaaacatgatgttgcaaagctgcggtgggcaaaagaggaaatcaatcgagcatctcccttttcaaccatccattgttgacaatcatcattttccactgcttaattgagatcatcgcagacattcctaatgtgcctatttgatcttcttctgcagattgaattcttctctaatatcataaaataaacagggagagagattggcgtcacaagaaaacaatacagtagttactccttttctctggagctgatgcattttctttccccttgttgcactgagagtttttcagtacaagtgcggaagaaataagttcttatttacattctcaatttatttttttatttttttatcctacattctcactttgttgcttggaattgatgttgtaattgagaccatcgcactcgtgacatgatttctatctaatcaaaattctttcagtttcagatg</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0117500, RefSeq:Os05g0117500