Os05g0149600

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Revision as of 10:07, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0149600| Description = Similar to Cullin-1| Version = NM_001061194.1 GI:115462118 GeneID:4337820| Length = 6641 bp| Definition = Oryza sat...")
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Gene Name

Os05g0149600

Description

Similar to Cullin-1

Version

NM_001061194.1 GI:115462118 GeneID:4337820

Length

6641 bp

Definition

Oryza sativa Japonica Group Os05g0149600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:2812254..2818894

Sequence Coding Region

2812660..2812761,2813051..2813218,2813315..2813533,2813619..2813762,2813928..2814210
,2814317..2814372,2814455..2814604,2814697..2814783,2814857..2814892
,2815543..2815605,2815690..2815770,2815850..2815939,2816133..2816210
,2816298..2816501,2816582..2816629,2816705..2816890,2818322..2818421
,2818529..2818662

Expression

GEO Profiles:Os05g0149600

Genome Context

<gbrowseImage1> name=NC_008398:2812254..2818894 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:2812254..2818894 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggcgttcatgcagaagggcatcaccaagctgaagaacatcctcgagggcaagcccgagccacagttcagctccgaggactacatgatgctctacacgtacgtcccccgccgccgccgccgcctcctcctgggacgatatacaacatgtgcacgcagaagccgccgcacgactactcgcagcagctctacgacaagtaccgggagtcattcgaggagtacatcacctccatggtcttaccttcattaagagataaacatgacgagtttatgctgagggaactagtaaagaggtggtcaaaccataaaatcatggttcggtggctgtcacgtttcttcttttatcttgatcgatacttcatctcacggaggtcgcttataccacttgaacaagttgggcttacttgcttccgagatttgatataccaagaaatcaaaggacaagttaaaggtgcagtgatagctctgattgacaaagagcgtgaaggcgaacagatagacagggccctgctgaagaatgtcctgggcatatttgttgaaattggactaggcagtatggaatgttatgagaatgactttgaagatttcttgcttaaggatactacagattactactctctcaaggctcaaagctggattctcgaggactcttgtcctgattacatgataaaggctgaggagtgcttgaagaaagagaaggagcgagttggtcactacttgcatattagtagtgaacagaagttactggagaaagtgcaaaatgaattgcttgcacaatatgcaactcccctgttggagaaggagcattctgggtgttttgcattgcttcgtgatgacaaggaggaagacctttctaggatgtacaggctcttctccaaaattaaccgcggtctagaacctattgctaacatgtttaaaacgcatgttacaaatgagggcacagccttggtcaagcaagcagaagattctgctagtaataagaagcccgagaaaaaggacatggttggtatgcaggaacaggtttttgtctggaaaatcattgagctccatgacaagtatgtagcttatgtcacagaatgtttccagggtcacaccctctttcataaggcccttaaagaagcattcgaggtcttctgtaacaagggtgtctctggcagttcaagtgctgaactgcttgccaccttctgtgacaatattctgaagaaaggttgcagtgaaaagctcagtgatgaagccatcgaagatgctcttgagaaggtggtgcgattgcttgcatacatcagcgataaagacctctttgctgagttttacaggaaaaaacttgcaaggagattgctttttgataagagtgccaatgatgaacatgaaagaagcatacttaccaaactcaagcagcagtgtggtggacaatttacttctaaaatggagggaatggttactgatcttactgttgcaagggaccatcaaactaagtttgaagagtttgtggctgcacatcaggagttgaatcctgggatagacttggctgtcactgttttgacaacaggattctggccaagttacaagactttcgatattaaccttcctgctgagatggtgaaatgcgtggaggttttcaaggagttttaccaaacaagaacaaaacacagaaagcttacctggatatattccttgggaacctgcaatatcaatgcaaagtttgaggcaaaaactattgagctcattgtcacaacatatcaggctgcgttgctgctgctattcaacggatctgacaggcttacttattctgagattgtaacacagctaaacttatcagatgatgatgtagtgcgtttgctccattctctctcctgtgcaaaatacaagattcttaacaaggaaccagctaatagatctatttctcccaacgatgtttttgagttcaattcaaaattcactgacaggatgagaagaattaagatacccctacctcctgttgatgaaaagaaaaaggttgtcgaagatgttgacaaggacaggcggtatgcaattgatgcatcgattgtgcgcattatgaagagtcgcaaagttatgggccatcagcagctagttgcggaatgtgtggagcagctcagccgcatgttcaagcctgacttcaaagccatcaagaagcgaatcgaggacctcatcacaagggattacctggaacgcgagaaggacaacgctaatgtgtacagatacctggcttga</cdnaseq>

Protein Sequence

<aaseq>MGVHAEGHHQAEEHPRGQARATVQLRGLHDALHVRPPPPPPPPP GTIYNMCTQKPPHDYSQQLYDKYRESFEEYITSMVLPSLRDKHDEFMLRELVKRWSNH KIMVRWLSRFFFYLDRYFISRRSLIPLEQVGLTCFRDLIYQEIKGQVKGAVIALIDKE REGEQIDRALLKNVLGIFVEIGLGSMECYENDFEDFLLKDTTDYYSLKAQSWILEDSC PDYMIKAEECLKKEKERVGHYLHISSEQKLLEKVQNELLAQYATPLLEKEHSGCFALL RDDKEEDLSRMYRLFSKINRGLEPIANMFKTHVTNEGTALVKQAEDSASNKKPEKKDM VGMQEQVFVWKIIELHDKYVAYVTECFQGHTLFHKALKEAFEVFCNKGVSGSSSAELL ATFCDNILKKGCSEKLSDEAIEDALEKVVRLLAYISDKDLFAEFYRKKLARRLLFDKS ANDEHERSILTKLKQQCGGQFTSKMEGMVTDLTVARDHQTKFEEFVAAHQELNPGIDL AVTVLTTGFWPSYKTFDINLPAEMVKCVEVFKEFYQTRTKHRKLTWIYSLGTCNINAK FEAKTIELIVTTYQAALLLLFNGSDRLTYSEIVTQLNLSDDDVVRLLHSLSCAKYKIL NKEPANRSISPNDVFEFNSKFTDRMRRIKIPLPPVDEKKKVVEDVDKDRRYAIDASIV RIMKSRKVMGHQQLVAECVEQLSRMFKPDFKAIKKRIEDLITRDYLEREKDNANVYRY LA</aaseq>

Gene Sequence

<dnaseqindica>6134..6235#5677..5844#5362..5580#5133..5276#4685..4967#4523..4578#4291..4440#4112..4198#4003..4038#3290..3352#3125..3205#2956..3045#2685..2762#2394..2597#2266..2313#2005..2190#474..573#233..366#accgcctcaacttgtcatcagtctgccgctccctcttcctctctctctctctctctctctatctctctcgcccgcttcctccccatttttctcgcgcggaacccaacccaaacccacgcggcggcgtctctcccctagggtttggtccgcgcggcctccgttcaccggcggcggcggcggcggctgcggcgatggcggggcaggagcggaggacgatcgatctggaggagggatgggcgttcatgcagaagggcatcaccaagctgaagaacatcctcgagggcaagcccgagccacagttcagctccgaggactacatgatgctctacacgtacgtcccccgccgccgccgccgcctcctcctgggtttcctcctcctcctcctcccgcccgctagggtttcccctccgattcgcttcgatctggtgctgatctagggtttccccccactccgtgtctgttgttgtctgcaggacgatatacaacatgtgcacgcagaagccgccgcacgactactcgcagcagctctacgacaagtaccgggagtcattcgaggagtacatcacctccatggtgagacgatctttttttttctgcagttcttgtaaatgtttgatatgattgtgcatgtctgtcatttccggttggattcgatagtaggtgatttggggttgatccaggcgattttggttgtggtggccgggcaccgatgggttataattcctccttggttaggaggagaatggggttagtgtacttggggatcttagttttgtctgattcggttacctgattattgttgatagaggtgatctatttgattcgattgtgtagtaagtctatctcagttgaataggtcataatttgtttccttttattagttaacttaactgaaacgatgatgattttccttgtgaatcaaaactctgcaagtaggatacgaatctatgactagtcagtcaacagctgatcgctctaccaatgtgcggcgggttgtaatacttcacctagttggccgaccagcctgactagtcaccgtctcgattagggggtaaacatgggctagtcagttcgaccgactagtcggtcctagtcaccgtctcgattagggagtaaacagtgggctagtcagttcgaccgactagtcggtcctagtcagttggttttagttggtgactaatcaatcaggcagaccaactaggagacagaatatggtatgagctgaaatatttaggcccaaaagtgtgggttaaaaggggggtaaaggggtctacggttagcctaaattccccaaattccccctggctcctttgttgcttcttttttatcctacacactgccatgcccctgctcacagtgggcccatgcatttgccgcacgcataccggtcttcccttctgccagtcccaggcacacccacactagtgtatgcagtgtggaccctgtggtctcaacatataccacgaaacatgtaaaaaattgtgccgatatccttaaatggtggttattttggaggcttggagcctccgactagtcagtgggtcattgatcaactaacgactagtgactaggtgaacgttgcatttccgcccccactgttttggccaaggctgctgtaaaagtgactatagcctagaaacataaaactataaaaggcatccttttaggttcatgccagtgtgctgattgtttccatgactttgaggtcaggagatatccttaaatgtctggctgatactggttctttgacgaacatcatgctttgcatcctagcattgctctcctggttttgtctaaacatggtagaaatcatgtacataattttttaggattgcgctaagcaaactgacacattttgcttgaaacaaaaactatttttcctacttgtgcatattgatctgatattctaacatgtattacatgctctttttgtatgctatgctcctttgttatatttgtatgtacactctgagctttatatcacttaattttaatatatttcaggtcttaccttcattaagagataaacatgacgagtttatgctgagggaactagtaaagaggtggtcaaaccataaaatcatggttcggtggctgtcacgtttcttcttttatcttgatcgatacttcatctcacggaggtcgcttataccacttgaacaagttgggcttacttgcttccgagatttggtaaaatagcttttgctcttgttcaatctctgtgttgcaaactttctgtgtcctaatctgaccaactcataacagatataccaagaaatcaaaggacaagttaaaggtgcagtgatagctctggtgagtcagcattcctacattgaattgggaaaatgattttgcgcgtatacttaaatagttgcaatacctttctttgacagattgacaaagagcgtgaaggcgaacagatagacagggccctgctgaagaatgtcctgggcatatttgttgaaattggactaggcagtatggaatgttatgagaatgactttgaagatttcttgcttaaggatactacagattactactctctcaaggctcaaagctggattctcgaggactcttgtcctgattacatgataaaggtacatttgaggaggatcttctgactggttctgtctgtatttgtaaatgacatctctggtgtaataaatgggtgctgtttttgttaggctgaggagtgcttgaagaaagagaaggagcgagttggtcactacttgcatattagtagtgaacagaagttactggaggtttgtttgagaattcccttttccagtttccaatcacttcatgttgatgagtgcttatacttgcatttgagatatgttcttacagatttgtatttggactgccatatcgatgtttcttaaataatgtttgggcactttccctgtatggtttggaatatcatctcatattattatccttcctggattgtcacagaaagtgcaaaatgaattgcttgcacaatatgcaactcccctgttggagaaggagcattctgggtgttttgcattgcttcgtgatgacaaggtttgttggacaacatgattcatttcttaaccgtatatcatgaaaacaaataatattgaatacccattatcttctccaggaggaagacctttctaggatgtacaggctcttctccaaaattaaccgcggtctagaacctattgctaacatgtttaaaacggtattgcctcattgcctcaaaattggtctgcttattccctataacctttttgtgcattctgattaaattattacttctctgcagcatgttacaaatgagggcacagccttggtcaagcaagcagaagattctgctagtaataagaaggtgcggtatttattttagcatttttcttacttgtgttccatcaaagtatggttattaggattgtgatttgtgcatgccagattagtgctttaaattagctccctttaaactggtttcagttgatcaaacagaggtcgctgactgtctctttctatttaatcctgtaaaattgtcctttattctatagttttcctagtgtgcacaattcctgacacggtatatgctgtttctggttacactcaaatgcttgattcccttgcatttattattagtgattcaaattcatgttatttgatttagttttttgtgctctactgtataaagaacctactggtgacggttggtgggatgctatgtgattctttaagattgtttttgcatgttgcttgtagagttgcagttagattatttatgggtttatatttgattacaattatatgtttccctgagaaacattatatctttaagattgtttttgcatgtagcttgtagagttgtagttagattatttgtgggtttatatttgattacaattatatgtttccctgagaaatatatagatcttttgaagttcagaacttttgattatttcaaattcgttgcaacaaactggtatttagctaatattctaatatcaactatttgtacagcccgagaaaaaggacatggttggtatgcaggaacaggtacacaacttgaacttcttgcacttcgttggtgatgaaatgttttccacctaacatgtgattttctttttaggtttttgtctggaaaatcattgagctccatgacaagtatgtagcttatgtcacagaatgtttccagggtcacaccctctttcataaggtctgccaatcgacacattcctattccttgttgttaccattggttcattaagtcaaatgtgatgcctcattcttaaacttctcattctacaggcccttaaagaagcattcgaggtcttctgtaacaagggtgtctctggcagttcaagtgctgaactgcttgccaccttctgtgacaatattctgaagaaaggttgcagtgaaaagctcagtgatgaagccatcgaagatgctcttgagaaggtgcatgttctcccttctcttttgctaccattattaaatttttgtagaaggaaatctaagctgaaaatgaaatatgattcaggtggtgcgattgcttgcatacatcagcgataaagacctctttgctgagttttacaggtaatgttgtgttatcttgttttaagcctatatacctcctgaatttaagaaacattactttttggactttgtattcatattgcttcatgtgtggagctatttgcaggaaaaaacttgcaaggagattgctttttgataagagtgccaatgatgaacatgaaagaagcatacttaccaaactcaagcagcagtgtggtggacaatttacttctaaaatggagggaatggttactgatcttactgttgcaagggaccatcaaactaagtttgaagagtttgtggctgcacatcaggagttgaatcctgggatagacttggctgtcactgttttgacaacaggattctggccaagttacaagactttcgatattaaccttcctgctgagatggtaagtgactttttcttgcagatctttagggttcatcattacatgcttgtcaattgtccttgataatgttaagctgaaacatgatccatatttatcttcttttccatgaaacatttattgccatgtgatcctttttacatgaacatttgcatttatcatttttaggtgaaatgcgtggaggttttcaaggagttttaccaaacaagaacaaaacacagaaagcttacctggatatattccttgggaacctgcaatatcaatgcaaagtttgaggcaaaaactattgagctcattgtcacaacatatcaggtaaatttaaattatatgactgtcaacagatctgttgcactaaaaacctttatgatacttttttgacatgcctctccttttgcaggctgcgttgctgctgctattcaacggatctgacaggcttacttattctgagattgtaacacagctaaacttatcagatgatgatgtagtgcgtttgctccattctctctcctgtgcaaaatacaagattcttaacaaggaaccagctaatagatctatttctcccaacgatgtttttgagttcaattcaaaattcactgacaggatgagaagaattaaggtatttcgtgtttttgtgttttgcgtgttggtgggccttctttctggagtatgaatgctatgatgttaatggttgtattcttcatattatgtgcagatacccctacctcctgttgatgaaaagaaaaaggttgtcgaagatgttgacaaggacaggcggtatgcaattgatgcatcgattgtgcgcattatgaagagtcgcaaagttatgggccatcagcagctagttgcggaatgtgtggagcagctcagccgcatgttcaaggtaccgactacatattacttctaggaaatcccacatattttaatccttatcacatcttgtatagttgcatatgagtacaactcatgcggcatatttttgtcttcaatgcatcttgaattagctgatgtgctaatgtgttctgagctcacatgtcaatcattttgaattagctgtttttctttcatctcgagaagttgttcttatcataaggaagaagttatttcttttaaattagttatatgactacagtacactgcattcccttactttggttttttgtccactgcagcctgacttcaaagccatcaagaagcgaatcgaggacctcatcacaagggattacctggaacgcgagaaggacaacgctaatgtgtacagatacctggcttgattggtggttgatgctaagtcaagaaacagctaagctttgctgactcgcgagcttcgctgcagcggtgtcatgatgcttcatcaacgatttcgtggtcatgcggtgtttttttgggcatttctatgttacgatgtaccgcggtcttccctggctgcagcactggctggtctggtctcattttgtacatgcgtcatcggataggagaatgatgataatctcaaagataaaacggtagcagggcatatcggctggataagtgaggcacttggtcactgttaagcgcaggtgctaaccatgccgttattatgcatatcatcagtatgcttttatgtatgtccttggcactcctgagttaacctggatgctaaatgggtatttatttgctctatgaaatagtagtattaag</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0149600, RefSeq:Os05g0149600