Os05g0153200

From RiceWiki
Revision as of 10:07, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0153200| Description = Region of unknown function, putative Zinc finger, XS and XH domain containing protein| Version = NM_001061212.1 GI:11...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os05g0153200

Description

Region of unknown function, putative Zinc finger, XS and XH domain containing protein

Version

NM_001061212.1 GI:115462154 GeneID:4337838

Length

4734 bp

Definition

Oryza sativa Japonica Group Os05g0153200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:3040899..3045632

Sequence Coding Region

3042041..3042884,3043034..3043215,3043648..3043737,3043830..3044117,3044218..3044439
,3045076..3045303

Expression

GEO Profiles:Os05g0153200

Genome Context

<gbrowseImage1> name=NC_008398:3040899..3045632 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:3040899..3045632 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagcatacctctgatgaggatcctgagcttgaagcttatggcagtgacacttatgcgcttttggaagcaggagatataaaagtgatgaacgataagaatatgtaccagtgtcccttttgttcagatgaaaagaatgactacaatgcacatggtttactgcagcatgccttggctgtaggatctgcggatgatcggccagcgaaagagaaggctaaccatcgagcccttgcattgcatttgaaagatgataccgcggaatcgtctaggccactgtcacagcctcctcaacatagcaagaacgatctgtttgtttggccctggatgggtatcatagtcaatatgcctgctgagtatgttggaaaaagtgcaaaccggctgaaggagcatttctcgtgttatcatccatcgaaggtgtattctgtatacagtaaaggtagaccttcgggcaacgctattattgagtttgggaaggactggagtagttttaggaatgcattgcaatttgaaagtgaatttgagaagaaggggtgtggtaaaaaggcttggctggattcagggcgtggagggccagagccttttggatggatcgcaagggctgatgattacaattcctcggggccaattggtgagcatctgaaaagaaatggtgacctgaaaacagtgagtgatgttgagaatgaaggaacagttaaaactgacaagcttatggccagtttagcttgtcaagttaaagagaaggaaatacacttggagaaacttcagagtgtgtatgatgagagatatctgtcgcttggcaaaatgatggagagcagggaaaatatgctcaagtcatgcaatacagaaatccagaagatgcaacaacttgcttatgaacaagcacaaaggacagttgatgagaaccagaagctacgtctgaatctccaatctatgatgcatgagcttgatgcaaattgcaaaagacttgaagagttgactgcacaggctgattctgacaaaagaaaccttgaggtgctgatgcaaaagaatgcaaagaaagctgatcatcttaggctggcagaattggagcagcagaaagctgatggcaatgtgctgaggcttgtggaagaacacaatagggagaaagaagctactttgaacagtaatatgaggttgcatgaacaattggacaggaagcagaaacttgaattagaaatagcccatctgaaaggcaaattgcaagtgacaaagcacacgcaaggcactgaagattcagatttagagaaaacgatagaggcgctgacaaatgagctggaagaaaagattgaagatatgaattatatggacaacatgaaccagactctaattctgaaggaaaaaaggagcaaggatgagctgcaggaagctcgaaaattggtgatagattctctacagagattgccttctgacataaggagccaagcacagataggcatcaagaggattggtgagcttgacttgaaagtattttcggatgcctgcaggcgaagattttcagaagattttgcagaagttgaaagttctgttctttgttcgaagtggcaaaatgaaatcaaagatccggaatggcatccttttaagtctgtttgggtcaatggaaaagagtcgaaagtaatcagggaggatgacgagaagctccaacaactgaaagaggagtacggtcaagaagtctatgatgcggtgacaaatgctctgttcgagctcgacatgcatagcattggtggcagggatccattcctggagctatggaactacgaggaggggcggaaggcgggcacgagggaggtgattcagcaagttatcaagctgtacaaggcgaccaagagaaggcgctga</cdnaseq>

Protein Sequence

<aaseq>MEHTSDEDPELEAYGSDTYALLEAGDIKVMNDKNMYQCPFCSDE KNDYNAHGLLQHALAVGSADDRPAKEKANHRALALHLKDDTAESSRPLSQPPQHSKND LFVWPWMGIIVNMPAEYVGKSANRLKEHFSCYHPSKVYSVYSKGRPSGNAIIEFGKDW SSFRNALQFESEFEKKGCGKKAWLDSGRGGPEPFGWIARADDYNSSGPIGEHLKRNGD LKTVSDVENEGTVKTDKLMASLACQVKEKEIHLEKLQSVYDERYLSLGKMMESRENML KSCNTEIQKMQQLAYEQAQRTVDENQKLRLNLQSMMHELDANCKRLEELTAQADSDKR NLEVLMQKNAKKADHLRLAELEQQKADGNVLRLVEEHNREKEATLNSNMRLHEQLDRK QKLELEIAHLKGKLQVTKHTQGTEDSDLEKTIEALTNELEEKIEDMNYMDNMNQTLIL KEKRSKDELQEARKLVIDSLQRLPSDIRSQAQIGIKRIGELDLKVFSDACRRRFSEDF AEVESSVLCSKWQNEIKDPEWHPFKSVWVNGKESKVIREDDEKLQQLKEEYGQEVYDA VTNALFELDMHSIGGRDPFLELWNYEEGRKAGTREVIQQVIKLYKATKRRR</aaseq>

Gene Sequence

<dnaseqindica>1143..1986#2136..2317#2750..2839#2932..3219#3320..3541#4178..4405#atctctcttccgcctcatcttgttcacagtgcctgcttgccttcctcctcctccctagggcttcctacctagctagctagcgatgccaagaagagaccatcgcgaagaataatctcccacgcaagaacaagaaccaccaccacctcgctccctcccctcctcctcctcctgctccaggtgagaatgcattgggaaaaaaaagccctcggtttgtttccttcctctcaaccaaaaaccctcgaatagtaccccaacttttactttttccatttcctttctcctcccaacaagatcgatggttgcttctttcttcttttccgtgttgtggatcggtggttgcggtgtgcgctgcagtctggatagcgtcgaaaaatcgtttcttgtttttttttttggggtttatttactggctttcgcaattaatcatgggttgatgaccacaaatttctttttttttctttttggatggcttagttcttgcttcttacgattagaggaattttgaccgggtatgacgcaaaattttagtcaaagtttaatttaatagattttgctaattaatccaattagtgcctgaaagaaagataaagttatggattagaggaggctttgcaaattatgaacaaatggagagtatcggtgttgggtgtgtttctggaatgcagtaactttttaggtaccttgttactgtttctatatactccaaatcctcatgcacacctggcatgtatgaggtttaatatagagctcaatttcagtcgttaaaccttgttgatagaaaccaatgatgggatgatgtgacgggctgtttgcgaaacacattgctaaccccatcgttgtgcattgagtacagattgtcgtgttgtttcatgttttgtagtttgcactatgtcctgtttgttctctgcaagaggacaggcggtttgtagggagtatgagatgagcttactcaccatctgaaacatatgtatttagtcactcttgtaagttatactgttgtttttacgctgacatttttctagtattgaccattgctcacatatgtactgcagcttcagcattctgtactatgttgagcacacccaattcatgttcacttgtttatttctcccagggttgttgatttgccctgctgttctctgatggagcatacctctgatgaggatcctgagcttgaagcttatggcagtgacacttatgcgcttttggaagcaggagatataaaagtgatgaacgataagaatatgtaccagtgtcccttttgttcagatgaaaagaatgactacaatgcacatggtttactgcagcatgccttggctgtaggatctgcggatgatcggccagcgaaagagaaggctaaccatcgagcccttgcattgcatttgaaagatgataccgcggaatcgtctaggccactgtcacagcctcctcaacatagcaagaacgatctgtttgtttggccctggatgggtatcatagtcaatatgcctgctgagtatgttggaaaaagtgcaaaccggctgaaggagcatttctcgtgttatcatccatcgaaggtgtattctgtatacagtaaaggtagaccttcgggcaacgctattattgagtttgggaaggactggagtagttttaggaatgcattgcaatttgaaagtgaatttgagaagaaggggtgtggtaaaaaggcttggctggattcagggcgtggagggccagagccttttggatggatcgcaagggctgatgattacaattcctcggggccaattggtgagcatctgaaaagaaatggtgacctgaaaacagtgagtgatgttgagaatgaaggaacagttaaaactgacaagcttatggccagtttagcttgtcaagttaaagagaaggaaatacacttggagaaacttcagagtgtgtatgatgagagatatctgtcgcttggcaaaatgatggagagcagggaaaatatgctcaagtcatgcaatacaggtgtgcatgtgcctatctccttcaaatttgtgtaagatatgttgtttagtaaatgtttgcatgtgatggtctctgttctctttatattgagcaatgttctttaggttatattgaatactaagttatcttttaaatttcaaaatcactagaaatccagaagatgcaacaacttgcttatgaacaagcacaaaggacagttgatgagaaccagaagctacgtctgaatctccaatctatgatgcatgagcttgatgcaaattgcaaaagacttgaagagttgactgcacaggctgattctgacaaaagaaaccttgaggtgctgatgcaaaaggtgagtcatttcttctctacgtatcatattgatcaaccaataagaattgtataacatcatttaagttataaaatttgtagttttctttggctaacagaactacagtttttttgatttcatatgtgttttttttgccgaatcatttatattatctacagcttttgtttagcattcataactttgattattgttccatcaaaatgatttttttcttaacctccctcagtcaaagacaccatgttctatcttttgttctcagatatcatgtagaaattttttttgaatgttttgattgacatacataatgcaatttgggcagccttccttggctggtaacatagttgcagtggaaaaggagaatgccactaaaccacttttatatgaaaatatacatacaccatacatgatataattgtgtcttttgctttatagaatgcaaagaaagctgatcatcttaggctggcagaattggagcagcagaaagctgatggcaatgtgctgaggcttgtggaagaacacaatgtcagtttctgttctttgatatttttaagcactgttttttttttaactgtacaggttttgtgatcctttttttgattgtgtggaaactgcagagggagaaagaagctactttgaacagtaatatgaggttgcatgaacaattggacaggaagcagaaacttgaattagaaatagcccatctgaaaggcaaattgcaagtgacaaagcacacgcaaggcactgaagattcagatttagagaaaacgatagaggcgctgacaaatgagctggaagaaaagattgaagatatgaattatatggacaacatgaaccagactctaattctgaaggaaaaaaggagcaaggatgagctgcaggaagctcgaaaattggtgatagatgtatgttactttctatggaatactgtatggttcaagtaagtgtacttgttttccatgagaatgcatgtttgtaactctttttggttctgtttaattgcagtctctacagagattgccttctgacataaggagccaagcacagataggcatcaagaggattggtgagcttgacttgaaagtattttcggatgcctgcaggcgaagattttcagaagattttgcagaagttgaaagttctgttctttgttcgaagtggcaaaatgaaatcaaagatccggaatggcatccttttaagtctgtttgggtcaatggaaaagagtcggtgagaatttctctttgctattttagccctggtagttaataattgaaatatctagtgccgtacagaatttcaaaccttgcaatctactcaggacgatccttttactggaaatctaaaattgctagtcagagaatcggtatgagtatgacctgatacatgaactcagagtttaatacttacaccacatatacaatgatcctattattcttagttaccaatcttcgtcatttactcgtatgcggctcagtgactttaccaacttttctgtttcatgttccccctgcaactatacttgatcgatggtgtagatttgtagaaaatcaaatctttgaagaatttctctcttctcttatagatagatagatagatagtgtagatttgtagatatctatctatctatctatctatacttgatcgatggtgtagatttgtagatatctatctatctatcttttttgctgggatgaccgaaggatctatatgtatgtttcatatccttcacctattggctgtgcgcatcttagctatgcagagactgggagtgtttttagtacggttgtatcacccttgatgtagtcggagttcaataaagcttctatcatctaaaaatcactaatggtaaacatgtatttccagaaagtaatcagggaggatgacgagaagctccaacaactgaaagaggagtacggtcaagaagtctatgatgcggtgacaaatgctctgttcgagctcgacatgcatagcattggtggcagggatccattcctggagctatggaactacgaggaggggcggaaggcgggcacgagggaggtgattcagcaagttatcaagctgtacaaggcgaccaagagaaggcgctgatggcttggccgccacttggttcttcatcaacctacctttgacctcaatggatatggtatggaacacacatatatatacatgaaccaaatgcagtactgcatatatatacatgaacctaatgcagtactacatatattttggagctagggctttgagacagtgaagtttgttactggatattagctggagatatattttgcagccctctgaacttatgactactagtattatgggcctctgtgcttttatgtccatttgactggttatgtgactgatagtctgtgtattctacttgccaaacttaatttatggccagtctgggctgacct</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0153200, RefSeq:Os05g0153200