Os05g0188600

From RiceWiki
Revision as of 10:10, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0188600| Description = Homeodomain-like containing protein| Version = NM_001187325.1 GI:297723780 GeneID:9268582| Length = 8014 bp| Defini...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os05g0188600

Description

Homeodomain-like containing protein

Version

NM_001187325.1 GI:297723780 GeneID:9268582

Length

8014 bp

Definition

Oryza sativa Japonica Group Os05g0188600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:5419118..5427131

Sequence Coding Region

5422964..5422996,5423124..5423219,5423322..5423483,5423598..5423889,5423976..5424098
,5424195..5424267,5424444..5424504,5424861..5424971,5425062..5425535
,5425615..5425649,5426202..5426760

Expression

GEO Profiles:Os05g0188600

Genome Context

<gbrowseImage1> name=NC_008398:5419118..5427131 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:5419118..5427131 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtccagattgaaggctaagattctttctattttgctccaactttgtgaagctgaaactgtttcttaccttgatgaagtcgccacttcaccaaagagtatgcaactagggcaaaccttggcactagaggttcttgatttgctgaagactgcgtttggaagaaaacaaaaacttaccttggattctcacgataagagttaccctatgggttctgtgcttatcagtgcgttgcgtctagttgatgtcttttctgatgattcaaacttcagatcttcatttataactaatactattccatttctgacccaaattttggctattcctcatgatgagtttgtctcaaactggtgctctgttaatctgccagtgatagaagaagacgctaatcttgattatgatccatttggtgcagctgagctggcactggcagctgctggtaataagttaactgaagctaaagcaaactattcttgcccttttcgccctatcagtatgccttctatagcatatgcgcagacaagaacatcatgtgtggtgaaaataatagcaaatttgcatgtttttgtcccaaacatatgcgaagagcaagaaagagacctttttcttcagaaatttcagaagtacttggtatcagggaatcctagatcatcagttgatcatccagcatcagctgatctcaaggccactacagtttgcagaaacttgggatctttgtctgagtatgctagatcgttaattcctaataacttgttaaacgaggaagatgtgcaattgttaagtgaatttgcttataagttacaaacttggtgtaaatcacatgttggacagagtacatcccaggcagtaaagattgatccgtcatcagaaagcaaggaagactttaagccactgcagcatcccttgataccaagtactgttgttccagattccagtataaataaccttccgaagaacatggaagagcctacaccaacaaacatggaagagcctgcaccaacaccctcaacaaagcaagagggaaatgccagggatgagactcctagaagcactgtcgctttaaatggtgggttcctgcagaattcagtcggccaggacttagtccatcttggtgtggcgagaactagttcaggctttctagggggaggtaccagtacaagtacaggatccctgcgctgcaaaatggatcttgatcctgcatccagcagtatggaccatttcaaaacaccagatagaaaagaaagtggtcttcaggatgatgagaaaggagacactcacatgtatgatgagagacaacctaagagaaggaagcgaaccattatgaatgataggcaaataaacgaaatcgagaaggctcttattgatgagcctgagatgcataagaatgctgctttactgcaggcatggtcagagaagttaagtgggcagggctcggagattacgtcatctcagctaaagaattggctgaacaacagaaaagctaagcttgctcgtattgcgaaagaaagaggagtactatctgagggtgagaacgcagataagccatctacgccagctactccccaccactgtgactcctcagaaagtgctggcgaggagagctacttgccacctgcgagggtcatgagtgctctaggcatatccaagggcagcagatttgtgagcccagatggcaatgagacaacatcacaggcagaattcaatcaaaatatcatgcttagccgccctttcacaagatcattctcatttgaacctggccgtcttgtttcgctcattgataatgatgggaaggaggttggcaggggaaagatcttccaagttgaggggagactgcaagggaaggccctgacagatactcgcgtttgcatcgttgatgttattgagctcaagattgagaaatggcgggagctacctcatccctcggaagcatcaggaagaacattccaagaggcagaatcaaggaacggtggtgtgatgagggtcgcgtgggatgtcatcagactatctccagtggttcagtaa</cdnaseq>

Protein Sequence

<aaseq>MSRLKAKILSILLQLCEAETVSYLDEVATSPKSMQLGQTLALEV LDLLKTAFGRKQKLTLDSHDKSYPMGSVLISALRLVDVFSDDSNFRSSFITNTIPFLT QILAIPHDEFVSNWCSVNLPVIEEDANLDYDPFGAAELALAAAGNKLTEAKANYSCPF RPISMPSIAYAQTRTSCVVKIIANLHVFVPNICEEQERDLFLQKFQKYLVSGNPRSSV DHPASADLKATTVCRNLGSLSEYARSLIPNNLLNEEDVQLLSEFAYKLQTWCKSHVGQ STSQAVKIDPSSESKEDFKPLQHPLIPSTVVPDSSINNLPKNMEEPTPTNMEEPAPTP STKQEGNARDETPRSTVALNGGFLQNSVGQDLVHLGVARTSSGFLGGGTSTSTGSLRC KMDLDPASSSMDHFKTPDRKESGLQDDEKGDTHMYDERQPKRRKRTIMNDRQINEIEK ALIDEPEMHKNAALLQAWSEKLSGQGSEITSSQLKNWLNNRKAKLARIAKERGVLSEG ENADKPSTPATPHHCDSSESAGEESYLPPARVMSALGISKGSRFVSPDGNETTSQAEF NQNIMLSRPFTRSFSFEPGRLVSLIDNDGKEVGRGKIFQVEGRLQGKALTDTRVCIVD VIELKIEKWRELPHPSEASGRTFQEAESRNGGVMRVAWDVIRLSPVVQ</aaseq>

Gene Sequence

<dnaseqindica>3847..3879#4007..4102#4205..4366#4481..4772#4859..4981#5078..5150#5327..5387#5744..5854#5945..6418#6498..6532#7085..7643#cactctactgttcgccaaccgcacctctatactctccctctcttacggcggccggggcggaggaacggccggccatcttccgccgcctcgcctcgcctcgcctcgcccccccgcgcgcgccgccggcgaacaaacccgggaggcgcggcgccgacggccacctctcctccacaaccccccaccctagcctcctccttcccaccccgttcccccgcggtctgctgcccccgtcgcgcgcacgtcggagaggcggcggcgtggagcccggcctcatcccaccgccagccctccatcgcggctcgaatcgagccgaaggtattgttactccgtcgctgctcttcacctggcgcgggcgtagattggagatccgtcccggtttgggttgctctctctccctctctccctccctgcgagttatgcatccggattcttattctgggatttggcctttgttttgatgcgtggaggaggagttgaatcctcctagatccattgctagtcgagtgattcgagtccgctctgctgttcggtgcactgtagcatcaatcatggccgacgattctgggaaggagcagaaggggaagtgggatacaaggatttttttaggttttccgttccatggctgcatgcttgcgttcctaacacgagttgcgttgcattgaactgatccaacatgtttgctgtatgaactcgttttgggcggcttcactgcacacgcagagcccgctcaggcgctcattagtagttaaccgatttaagaacataatagaagggaaatatataagatgttgcgttatgttcaaggccaggagaaatgaggttcaacttttggctgtttcacggtgacctttgctgcattctgattgtctgacacaattctaggctgaatccagaccagtcaaatataggtttggcagataaaggttggcccatttttgcactagatgttattcaactctgctttaggccttcaactgtacacacacacacacgcggcaaatgtgtctcgaaatagtcgttacacggggaatctgttcatttcgttagaaaatctttaaatgccatggcttgcatattggttaaatgattacttctatcatttccctgagcccacaatgctctttttcactcctgtgcaaactagtgtggatacttctctaactaaaaaattctcattttgtttcttaggttcagatgatagacatggtgtcagttattgaggagctcagtgggctaacttctagagaacttggagagatgctgaaggagtcagagaactttgtcttgcaggagaagacagaagatggtggtacaaagcaggtgtgtatgtataatatttgttgtcatttgagtttcttttccctgacatacatttctcttcgtaggtggacatggaaaagcttgtgtcctcgcttcctcttcaccttcttgctgtatgtttggaacttgaaagaggttcagatttagcgtatgtcctccgtggtatgcgcttcttgcatagtttgtctgagctatcagctcgccacactaggctggagcaggtttacttctttcaatatttcactcaagcctccccattttatccacaaataattcattttttttcttttgaatcacgatacgctttgagcattctttttctttcatctctgtattgttttatatctctgtattgtttttgttccctagtgttgtgaactaaatgcaatgcaactctttttttttgtccatctttagtcattgctaagtttaatcaagtccaatttgtttattgatttcattttactctctgttaaaattgaactggctgatgagtgttgagaaacacatgtttatttattgcaggttcttctcgatgatgtgaaattatctgaacaagtcatggacctgatattttttgtgctatctattctttcccactggaagaaggttcggcaagtgccaccaaattatatattgagttctatgtactgttttttttaagattatcatttcatactaatttatggtggcagctattgttttaaattaggaaaatcatcttggtgtttctccttttatacactcatcacttgtagcagccagtcttcatctgttgacaagttacttttcatctcagtggcatgaacttgttcatattctgcttgcacatccaaaggtaacacatgttaatttagaatatgtttaacttagttgtcttttcatgcctaaacgaaagcatgataagtaacctccagaattttgtgatgactttaaaattaaccttgaaatatcattgatttttaatgctgttttaccttgctttaattgtacctgaatcctttattattttctatttttatcctccttaccggcttgtctataatagtctctctgtggtgcaagatgattttgtacatgataatgccctgttatttttggttttatcgttatgagttatgacaaaatagagccggcaacatgatttgggatgtgagcccttattgttttaaggtcaaatcaaaattcatctgaacattttaccctgtcctgacatggcattttgtggtttaaatcatctatcagcgataaatctccatgtaattttgtgtacagcctactgtatcagaaagccatgctctgtcaaatgcaacttttgctgtgtttactttaaagtttctgttctaacatataattagcacaccaatatattttttcctttgagcattaccactgttcaaacttgtatatttctttgtttggggcatttgattgcagggatacatcttttgcatcattatatcatttcataagatagtgtattacttcagctatcctattgttttccttgaagcaaaaatacaaagtccatactaaagttttagtgacttgtgcccattgcatatttttcttgtactgtaataatatttgactgaattatgtcactcttgtgtttatagatgacaattagaaagattacttaaaaagaaaaaaaaaagagcactgggttactattgcaaattctttgatcatgattcacgaatgtttgccagattgccagcaatacatggatttgacagttaggcaattattcttcgttgtttttatctctttatctatcttaatgtttgatgtttcatggtcaggttgatatctttatggatgttgcctttgatagcctgcatgatgatgtgaggtcactgagtcacaggttgtcaacattgagcaccaatacctttcctgttggcccttttgactcacgactcacacacttcatctgccaacagtgtgaagcatcattgcagtttcttttgttactgtgccagcagaagttgttccgagatcgtattttaaaaaacaaggtctcagatatgcttacaaatcctgtttccttttatctttggtatcactgttgattaaaaaatatttaattggatattctcttcccttcatgacatatcaacatatacatgttatatcatactgatttgatgagaaaaatgtgtgtaccttgaggactgtttatttgttcctcgaatgcagtgttccattagtttacatgctttgctcttgttccacaaaacagatcagtctagactagcctcgttcaagagacatgttttatgtttttttttgagcccacgtgtctgtgtattcctataaattatgagtactagcgtcaaatctgcaatttgttactatatattattacatttgatgtgttggaacttggaagctagatctgaagtaacctctttcttaacgcaggaactctctaggaatggaggtattctgtcactctctcgatctatattgaagttaggtgttccagagtgtctgaagggatcaattgatattgctgcttccatgtccagattgaaggctaagattctttctattgtaagttggtcatgagccatgactcaagattgcacttcgtataaataattaaatagagtgctactatatttactgtttgcacagtaccgagttactaactaaatccttggtgcaaaacaaatgctagttgctccaactttgtgaagctgaaactgtttcttaccttgatgaagtcgccacttcaccaaagagtatgcaactagggcaaaccttggcactagaggttagttctaccagggatgatcgcaaactttgaaatgttaccgactctgctacccgtggatttttttttcagttactgacaaaattcttatgtcacatgcaggttcttgatttgctgaagactgcgtttggaagaaaacaaaaacttaccttggattctcacgataagagttaccctatgggttctgtgcttatcagtgcgttgcgtctagttgatgtcttttctgatgattcaaacttcagatcttcatttataactaatactgtaagagtaactatttctaccttgatctatttttagtttttaccattgagcaactgaaaatttccagcaaatataatgttttattcaagtcccttttgttcatctcctttgcagattccatttctgacccaaattttggctattcctcatgatgagtttgtctcaaactggtgctctgttaatctgccagtgatagaagaagacgctaatcttgattatgatccatttggtgcagctgagctggcactggcagctgctggtaataagttaactgaagctaaagcaaactattcttgcccttttcgccctatcagtatgccttctatagcatatgcgcagacaagaacatcatgtgtggtgaaaataatagcaaatttgcatgtttttgtcccaaacatatgcgaaggtcagagctttttctctcctgctacaaattgctaagttgctatgttgatttgttgttaaaagcaagttccactgtcatgttagcagagcaagaaagagacctttttcttcagaaatttcagaagtacttggtatcagggaatcctagatcatcagttgatcatccagcatcagctgatctcaaggccactacagtttgcagaaacttgggtaaagtggcttatacttttatccaattttgtggttatgtttatgactttattcattatacttcatgtgtaaacctcttttttgtgggttttgcaggatctttgtctgagtatgctagatcgttaattcctaataacttgttaaacgaggaagatgtgcaattgttaaggtagttaagcgtttttgacttgtcatgtttcttagtgtacaaactgtgttacaaattttttgtttaatgcctaattttgtgggtcaacatttggttttaatttgttgcgcgctgcatatagttttgaaacacttttactgatatttctgcaaaatgtgtttttttcctatttgcagtgaatttgcttataagttacaaacttggtgtaaatcacatgttggacagagtacatcccaggtttgtttgcttttcacagtaattatagaatcatagtagccacctacatatccaagcattttgcttagggtgcttggttccctgctcctccttgagggataactacaaatttcatttccaacaaaataatggttcaactgttcaagtacatcacttgcactctgtctctgtgcaagcttttttaatgaacaatattcaatactatagccaatttttttgtatggtaggtgataggtgcaacttgtgtataaattagaaaaatagctttgacccttgcatcagatggtcaattcatacttctagcaatctagttgaaatcgaaatgttggacgtgacctcattctgggatgttttaggcagtaaagattgatccgtcatcagaaagcaaggaagactttaagccactgcagcatcccttgataccaagtactgttgttccagattccagtataaataaccttccgaaggtaggtttgttcagttgttcactatgttgagtataatatattagccattgacttggtaattcatctgatcccaacaaaaatgatgtgcagaacatggaagagcctacaccaacaaacatggaagagcctgcaccaacaccctcaacaaagcaagagggaaatgccagggatgagactcctagaagcactgtcgctttaaatggtgggttcctgcagaattcagtcggccaggacttagtccatcttggtgtggcgagaactagttcaggctttctagggggaggtaccagtacaagtacaggatccctgcgctgcaaaatggatcttgatcctgcatccagcagtatggaccatttcaaaacaccagatagaaaagaaagtggtcttcaggatgatgagaaaggagacactcacatgtatgatgagagacaacctaagagaaggaagcgaaccattatgaatgataggcaaataaacgaaatcgagaaggctcttattgatgagcctgagatgcataagaatgctgctttactgcaggcatggtcagagaagttaagtgggcaggtatagtccttcacctggccattcttctgttagatcaaaatattttatatacttctcattcatgaaaatgtgttttcagggctcggagattacgtcatctcagctaaagaattggtaacactgaagctatctttgttattctttttccttagcaatttagcattacttgtatgggaacatatcctgtgcacacaagccttctcatctacacagcgtgcagaccaactaacaaatttcacaaaaatatctagaaaaaattgtacaagtatttccaatagtattacacttatgtataaagtcttaacttcaaattcattatatcttagctgtaaccaaaaaaaaaaaaaatctaacagttttgagagtataaatctgttagaaatttgtcttttttgttgctacctatatataatgaatttgaagatgagactttacacatagatgcaatactactagaagtacatgtgcaatgttttgtagaatttttggtgatatgttttagttggtgtgcacggtgtgtatacgagaggacttgtgtgcagagcataagtttcctgcttgtataccataactgacgttttgttcatcaagttcatacttcacttctgtactgtttttacttctcagtccatagcttacttatgacaaaccttctttaaattctaggctgaacaacagaaaagctaagcttgctcgtattgcgaaagaaagaggagtactatctgagggtgagaacgcagataagccatctacgccagctactccccaccactgtgactcctcagaaagtgctggcgaggagagctacttgccacctgcgagggtcatgagtgctctaggcatatccaagggcagcagatttgtgagcccagatggcaatgagacaacatcacaggcagaattcaatcaaaatatcatgcttagccgccctttcacaagatcattctcatttgaacctggccgtcttgtttcgctcattgataatgatgggaaggaggttggcaggggaaagatcttccaagttgaggggagactgcaagggaaggccctgacagatactcgcgtttgcatcgttgatgttattgagctcaagattgagaaatggcgggagctacctcatccctcggaagcatcaggaagaacattccaagaggcagaatcaaggaacggtggtgtgatgagggtcgcgtgggatgtcatcagactatctccagtggttcagtaagtcgaacttttctttgcaatgcgtagaaagacgctgtgacaccaagaaagtacaagaagtaaaaagaagtttaatttaggatcagaaaatcgtgaatcttccggagcagtttgtactaagtcgccgccctgactgatgactgttgtatccatcgatcgaatgctggacttgtttaggatgaagtacatcctaatttacaaaattatgttattctgcttatgctaggtgcaacaaattcaagtagctggtgttgaccatgagattttttttttcagtattcatagacctcacttgttagctgtcgctatatgctaaggacaaaggtttcttaagatggacaaaggttcatatgctaaggacaaaggtttctt</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0188600, RefSeq:Os05g0188600