Os05g0219800

From RiceWiki
Revision as of 10:11, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0219800| Description = Similar to Clone ZZD1128 mRNA sequence| Version = NM_001187351.1 GI:297723832 GeneID:9272109| Length = 7159 bp| Def...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os05g0219800

Description

Similar to Clone ZZD1128 mRNA sequence

Version

NM_001187351.1 GI:297723832 GeneID:9272109

Length

7159 bp

Definition

Oryza sativa Japonica Group Os05g0219800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:7378385..7385543

Sequence Coding Region

7384898..7385223,7385297..7385432,7385458..7385541

Expression

GEO Profiles:Os05g0219800

Genome Context

<gbrowseImage1> name=NC_008398:7378385..7385543 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:7378385..7385543 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ggcactcgtccccgtcgccgagacgccgacggccgcgagcgcgggaaaaatcccaaaccccaccaccaccagcgcgcgcgcgcgcctccgccgccgccgcggcgggacttcccggcgttcccgttcgcgccgtacccgatccagtcggagttcatgtccttcctctacggcgccctctcctccggccccggcgcgctcgccctcctcgagagccccaccggcaccgggaagaccctcagcatcatctgcagcgcgctccagtggctggtcgaccaccgcgacgccgccgcacggggctcgaccaccgccgccgcagccggcggcggtggggaaggagacggcgacgagcctgactggatgcgggacttcacgccactgccgccggagaagccgaccgcgaagaaggggaggccccccgccgcagcggcgcggagcaaggcgcgaggagggcggcggcgggttcggagaaaccggaggggtctgaggaggcggaggacgaggagttcttggttgaggagtacgagagcgacggcgaggtctgcgtga</cdnaseq>

Protein Sequence

<aaseq>GTRPRRRDADGRERGKNPKPHHHQRARAPPPPPRRDFPAFPFAP YPIQSEFMSFLYGALSSGPGALALLESPTGTGKTLSIICSALQWLVDHRDAAARGSTT AAAAGGGGEGDGDEPDWMRDFTPLPPEKPTAKKGRPPAAAARSKARGGRRRVRRNRRG LRRRRTRSSWLRSTRATARSA</aaseq>

Gene Sequence

<dnaseqindica>321..646#112..247#3..86#agggcactcgtccccgtcgccgagacgccgacggccgcgagcgcgggaaaaatcccaaaccccaccaccaccagcgcgcgcgcgcggggcgaaatgccggcgccgcctccgcctccgccgccgccgcggcgggacttcccggcgttcccgttcgcgccgtacccgatccagtcggagttcatgtccttcctctacggcgccctctcctccggccccggcgcgctcgccctcctcgagagccccaccggtgagacctcaccgccgccgccgccgcttccccccttccgacgaaaccctaacattcgtgcgctcccccgcaggcaccgggaagaccctcagcatcatctgcagcgcgctccagtggctggtcgaccaccgcgacgccgccgcacggggctcgaccaccgccgccgcagccggcggcggtggggaaggagacggcgacgagcctgactggatgcgggacttcacgccactgccgccggagaagccgaccgcgaagaaggggaggccccccgccgcagcggcgcggagcaaggcgcgaggagggcggcggcgggttcggagaaaccggaggggtctgaggaggcggaggacgaggagttcttggttgaggagtacgagagcgacggcgaggtctgcgtgaggcgggaggcggggaagcggccgcatcgcggtggtggtagcagtagcgagagcgaggcggatggggaggaagaggaggaggaggaggtgacacccaaggtgttcttcactagccgcactcactcacagctctctcagtttgtaggagagctcaagaagacggaattcggatggcggctcaggacggtgtgcttgggatccaggaagaacttgtgcatcaacaagggtgaggaagcatgagtaattctcttgtcctgttttttctctggtggatatactggtgtgttgatttttggtgcatttgtgtgcagatgttctgaagctggggagcgcaaaccggatcaatgagaggtgcctggagctgcagaagagtaagaagagcagcaaaactaaggtctgccaattttgttttggaatgtttgttcatcaatctttgaagttgaagccttagaaatgaatagttgttaactttgttttggaatgttttggaatagtttttaactttgtagctgaatttgttgcttggcaattggcatactgaatttattgctcggcaattggcacactgacggtagcgttcttttgtgctaaatggctgaatagaggaatgatttatgataaatatttgagggtgcaaacgaatgaattaactattataaagttgaaaaaggatttgaaacagtattataaaaaatccatatatagaaagtttttgcaaaattcacagtttaggagatcgggaaacatgaccggtaatccattcatccattccattaagcattacgcttgaccttgctttctttgatgaccccctatttaacttaactttgtttcttggttccctaaaagaaaaaacaaaactttgtttcttggtgcttccatagtaacgtgagctataaattcacaaagtatattccataggacatcacacctggtgtgcttgtagttatttttatactgcacaatatgctgatttttcaatattgaagcagtgggttatcatacttacatttgcagaagagtaattggttaaaataccaacagtgtgctacaagtaccagttaatcaataaatactatctattcaagtggctttgaatatgcaggtagagggtgacaacagaaaggtgtgccaatcaaagacctcttgtgggtgcccaatgataagaaagaggggtcttcagaaagaattcaaaagtgaagtgtcagagcaaggtgcattggacattgaggatctagcgcaattaggaaagaagattggaacatgtccctactacggtgcacgtgatatggtccgcacagctgacctagttgtccttccttaccagtctttattgctgaagtctgctagagaatcgcttggccttaatctgaagaacagcgttgtcataatagatgaggctcacaatttagcagattccctcactagcatgtacaactcaaagatcacatcttctcaggtatacgtctccgtctcaatatgcctcagatatattgtcctggatatctagattggttagcaattgcattgtgttgcatcttttttgctactattatacctgtttgttctatcccaacctttttgtttaattatccctactacatatcttcataattttgtgtccttaatgcacatctgataatgttgtcctaactctaaaacagagatattggaatgttcagcatatacagaggtttaactgtacttagacttcctctttgatttcactgttgtgtcatggcacacaataagatcatgaaaaagatattctcctgattcatgtttcactaagaattttttttcttaaaataaattaattattatgtcaacgaaaattgctccttctcaaatgagcttcggtggtggcttcctttcgatctttaattgggttgtaggattctaccatgatgttctgttaagaaagtttcaattgtcgtgaccttcaactttataactaactttgtttcacattcttattttcttgttgaattaagctgaatgcaattctttcccacctggaggcatatctcaatagatttcagagtgttctgggagctggaaatcgacggtacatccaaacattgactgttttaacacggtcatttctacgagttctgacaagcaaccaagatgatgcctgcactatgacttctatgactataaaccagttcttgttctcccttgatatcgacaacataaatatagtaaagctttgccagtatgtgaaggaaagcaatataattcacaaggtgaaatatttcttgcaccacatgtccattccaccatgcagtgtctagatcagttgactgttgatttgcaggtaagtggatatgcgaacaaattgaacatcaatcaagatggtgtgaatcatttaagtcaccagcagcaatatgatgaaggaagcagtatagcaagctttcagacattggctgattttttgcgctccctattaaactgcaatgataatggaagaatcatagttgcaaggaaaaagttcagtggacaacctgaagatgcttatcttaaatttgtgatgctttgcgcagagaaaatctttttggaggtgctgtaaccttgctttgcatgtgacatggggataatgccttattctacatagcatgtatagatttatcaatttttctttccttctgcagattacatgtgatgcatatgctgttattctggctggtggtaccctccagcctatagaagaaacaaggctacgcttgtttccaaacttacctccttctgatataaaattcttcacatgcaaccatatcgttcctccagagagtattcttcctatagctgttacacgtgggccatcaggcaaggcatttgatttcagctacagttcaaggagttctcacaccatggtttgtaccatgtgcctcaaataatttccctttaccttcaatactctagcatatatgtgaaattgcaattgcaagctatgagtttatattgcatctagctactcctttccaatatatgtattttgaaacaccaatgcacatatatattaatgcctgtagtataactgtagcactcgttgtatgatttatcatttgtctactgaaaatataaattagtcaaatgcatttgcaacttcatgcccatgtattcctcattgctataagaataaggcatgatctgaaacaaatgtactggaggctgtaaacataaagaaatctaaaaataaattatctacaagtctaaaaaatggcatgctgtatcatcttaactgaatttgtatgtgctacctcattgatttatctacaagtctaaaattaaatgcattgatttttttttcatattgctctattcaagagcatgtatcttggtagttctattcttattttcccatctgtacagattgaagagcttggtcgctttctttgcaatgtagtgacgacagtgcctgaaggagtggtcatgttttttgcttcctatgaatatgaaagatttgtttatgatgcatgggcagcttcaggcatgatttccaagatttctaagaagaaacatgtcttcagagagcctaaaaacagtgttgatgtcgaaatgacgctcaacaaatacaaggaggcaattcaatcctgtagcaagagttcgcaagatacaggagtcactggggcacttctattggctgttgttggtgggaaaatttctgaaggcataaacttcagtgatgggatgggccgttgtgttgtaatggttggattgccttatccaagtccatctgatgtggagctgaccgagaccataaagtatatagaaaatatttctaaaccagttttggttgggggtgataattcctcaagcagcaaatatgatgatgaatgcaaacttcagcctggctttgatatattaagaaagtgcaacaaaggtggacgagagtactatgagaacttatgcatgaaagctgtgaatcaatctattggtaaattactgtcatttgaacatttaggaattgggatgctaacacttaacacgtactacttaagtaaagttcttatacgatgaaatgatttcattgcaggaagagcaatcagacatgcaaatgattatgctgcaatgctattggttgactcacgttatgcccatacttcatcaaacaggagttcctcttcccctactgacaaactaccccaatggataaaaacacgacttgcttgtgctcaaaattatggagaggttcatagattgttgcaccagttcttcaaactcaacaggcaaacgcattgaataattacagatcacacggtttcagaacagttcataaaagcaaacacatacaggtatgctagtgtgagctgcttactgatgattgaggtactaggtttaccaggttcagttagcactaggaatcccatgctattcataattgtgcttcaatgttattttaataaaactattatgtttaagaaatttagatgattatccttccattaatttcaaattttagcactataacttagtagatatatttgaatttggataatttttctctcctctacctgattttccgccattctttttgtgttaatagtttgatctgcctagtgaagtactatgaaagcatgaatgaacccaaaatttcaaaatggtttgactcccaggtaggggtaaaaacggtacggaaactttccggattccggacctattttcggaaacggaatctgtcggtcggaattttttcggaatttttcggaaacggaaacggattcggaaatatttcctcggaaacggaatcgaaaatgatatgggcggtttctgtcggaactcggaatcggtcggaaactttccggaaattttctcggaatttccagaatttttctcggaatttccagaaatcacaaaataccctggattcttctttttaagcactgaatagttaataccgtggtgtttggctgttattttttaaaaaatatttgttatacaaatctaaaattatataaggatatttttttcctgcattgggatttatcaacaacattactaatttattccatagattatgttttgtgatgtactgttgatacttaacaattggatttatatgattatgttttatgatgaattgttgaccgttgagacttgagaattgggtttatcagtttgaggcggttttttattccgataaatttttgttaccgtatttgcgccggttcgttttcactccgtttttggttttgataatattcgattccattttcgtattcggggtttccgattccaagaaaaatatgaaaacgaaaacgataaagatgatttccatccgtttctgtaccgttttcgcccctactcccaggccttctactatcataatgtgtcaaaaatcatttgtatcttgtgtagaagtgcacacaactacatttttaatatttgatgtaatctatgtgcccacctgtagcttttctttgccctgcctggctgatggtagagtttgcccaacttcagcatcctagttatgatagtagttttacatgtatgttttcttctgattttttcccctaatattgtgaaaaataaaaaatgtggtgaaagctggaataattaaaatattaaataggttaactaatgtctaaatttaatgattccattatttggtttagaccattgtatttctacagagtagaaaatctgtctgaactttgaagtgatgcattatgaccatatgatactttttttgtgccacaagatgctttgcagccagccagtaaatgctctttatattgatcacattttttttttgaaactgtagagctaaagcacagttaactcatttgatttagtctgctgattttccaaatatcgagaataagcttcaatgcttttcctaacgcatcgcaacaggtattcatgtcttatgctattcgtatagtcgcattctatatttctgaagtgagagcattatacatttccattctcccaatttgcattttcaaggaaggccaattgcattcttaaaatattactaagtacagaatagtattttacttcagctttgtaatttagtacttgttgttttacacttgtataataatgcgttaaaccaaaggaagctataataacggcagaacatcgttattttcatccaactaggttcggttagctttatattactagggttttttcactgtaaatattactaggtttgttttcactgtaatgattatttatgtaattctttgtcaggattcaggacgatcaagcttcacttattgaatatgctgagcttcactgtgcagaacatgtttggggttgagctgtaaaagtgacctgaatgcagttgctaactgattcgataagatggagcttcatgtagatatattttgtggacacggtttgttcgtaagtaatgaacttatattcctggtgttctccatttaattaagtactgctgctgacttaggaactgccaagcttagccacatggggtgttttacggtaccctaaatgattgagccgtttgttgatttagatctaatggatttggttcacttatact</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0219800, RefSeq:Os05g0219800