Os05g0233900

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Revision as of 10:12, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0233900| Description = Zinc finger, TTF-type domain containing protein| Version = NM_001187356.1 GI:297723842 GeneID:9270653| Length = 4762...")
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Gene Name

Os05g0233900

Description

Zinc finger, TTF-type domain containing protein

Version

NM_001187356.1 GI:297723842 GeneID:9270653

Length

4762 bp

Definition

Oryza sativa Japonica Group Os05g0233900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:8153376..8158137

Sequence Coding Region

8153376..8153849,8155737..8156530,8156727..8156921,8157006..8158137

Expression

GEO Profiles:Os05g0233900

Genome Context

<gbrowseImage1> name=NC_008398:8153376..8158137 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:8153376..8158137 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcaagtagtgatatatcaaggtcaacccgagaatgagagtgatagtggggcaaccagtccaaccacagtaccgcctgatgtagagaatgatgatattggaggagggccaaatgatgactcatcaagtgatgaagacaatgatggtggtgtatatgacatagagcatgatcctggattgaggactcctatctcacaatatgatgtcaatgaccaagattcagttagaagggagtatattgcattgggcccttgtcaaccaaagatgaagaagggggattttccacagcatgagtgtggaggtatgcaccgcttcctgccaaaatggttttctgagttcaagtggcttgagtatagtgtgcatagagatgctgcatattgctttgtttgttacttgttcaaagatagcactaacaatcatggtggagatgcttttgttaatggaggttttagaaattggaacattaaaagtagatttagtaaacatgctggtgctgtcaatagtgctcattgtgaagctgaagagaaatacaatttgttcatgcaacctaagacatcaattcgtgagtcctttgcatcaaactctgcagagtttaaggttcaatacttagctcgcttgacatggtcacttaagtgcataagatatcttctgcggcaggggttggcttttcgtggtcatgatgagtcaaaggattctaacaacaaaggaaattttagggaacttgtgcaatggctagctgggaactttgaagaagttaataaggtggttctaggaaatgctccaactggttgtcaaatgatagaccataagattcagaaacaactcattggttcttgtgctcacgaaacaactaaacttgtcatagaggaacttcatgatgagtgttttgcaattcttgctgatgagtctagtgatgcctaccaaaaagaacaattggctctttgcttgcggtttgtcaatacgacggggcaaccagttgaacggtttcttggtcttgtccatgttgaagatactacatcattgactcttaaggaggcaattaagtctttgcttattaagtaccaactacccttatccaaggtacgtggacaaggatatgatggtgctagtaacatgaaggatcatattaatgctgttgctaaggagaatactgattgtgcatggttctttgggcaacttgcatatttgttgaatgtccttgggatgtcttgtaaaaagatccgcatgcttcgtatagctcaagctgagtatatgattgaagcattgaagttgggtgaaattgagagtggccaaggtctgaatcaagagatgggcttagcaaggccagaggctataggagctcaaactatgctacaagtatttcagtcatttgagtttgttttcttgttgcacatgatgaatgaaatatttggatacacaagtgacttctgcaatgctctgcaaaggagggagcaagatattgtgaatgcaatggatattcttgagttcacaaaggcagaatttgatgttttgagagaagattgtggatggaaagaatttcttggaaaggtcacttctttttgtgtgaagcacaaagttaaagttgttgacatggatgggaagtataagcctatacaaagatcaaggaaattcttcagagatgctattaattaccatcgattccatgccgatatgtttttgggtgtcattgataggcaacttcaagagctcaataacagatttgatgaggtaaacacagaattacttagatgcatggcatcatttagcccagccaaatccttctctgcttttaatgttgacaacttagttaagcttgccaagttctatcctagtgattttgatgttgaagaaatgaaccaactcccctttcaactgaaccgctatattagtgatgtgggtaaggatgagaatttcacaaatttgagaagtttagcagacctatctatgatgcttgtcaaaacaaacaaggtttctcgctatgaccttgtttacagacttctcaaattggtgttagttctccctgttgcaactgctggtgttgagagggttttctcttcaatgaactatatcaaaaacaagttaagaagcaagatgggacaagaatatttgaatgattgcttggacgagaagacctcgcccaactgtccgtcctccgcgccaccacgcaacggcatcgtgtacctagtgcttgaaggacgtagaaacgtcgcggacctaccgctttgcccaatcgcgccactcgagtgtcaaccgcctgtagaagccgcatcgccaggtgatggagtcgccgcgttgattgctttccttcttcctgaaattgcgctgctgcccaaggaaaccgagctgtctcccggaaaatgcgtcgcctccaacaaatcggatacgcgccctctatctgccaccgtatctagagcttcggctgcaccgaaaaccacgccgcttgttgcgccgcaatcaccgccgcagctccgatcacgcgcgagctatcggcctcaccttcgcggctcaagcccagcgagaggccacgacgcgcatctcgcctgcgcctcgtgcacggcgcctgatgctcgtcggtgtgcttctgctcttcggtga</cdnaseq>

Protein Sequence

<aaseq>MQVVIYQGQPENESDSGATSPTTVPPDVENDDIGGGPNDDSSSD EDNDGGVYDIEHDPGLRTPISQYDVNDQDSVRREYIALGPCQPKMKKGDFPQHECGGM HRFLPKWFSEFKWLEYSVHRDAAYCFVCYLFKDSTNNHGGDAFVNGGFRNWNIKSRFS KHAGAVNSAHCEAEEKYNLFMQPKTSIRESFASNSAEFKVQYLARLTWSLKCIRYLLR QGLAFRGHDESKDSNNKGNFRELVQWLAGNFEEVNKVVLGNAPTGCQMIDHKIQKQLI GSCAHETTKLVIEELHDECFAILADESSDAYQKEQLALCLRFVNTTGQPVERFLGLVH VEDTTSLTLKEAIKSLLIKYQLPLSKVRGQGYDGASNMKDHINAVAKENTDCAWFFGQ LAYLLNVLGMSCKKIRMLRIAQAEYMIEALKLGEIESGQGLNQEMGLARPEAIGAQTM LQVFQSFEFVFLLHMMNEIFGYTSDFCNALQRREQDIVNAMDILEFTKAEFDVLREDC GWKEFLGKVTSFCVKHKVKVVDMDGKYKPIQRSRKFFRDAINYHRFHADMFLGVIDRQ LQELNNRFDEVNTELLRCMASFSPAKSFSAFNVDNLVKLAKFYPSDFDVEEMNQLPFQ LNRYISDVGKDENFTNLRSLADLSMMLVKTNKVSRYDLVYRLLKLVLVLPVATAGVER VFSSMNYIKNKLRSKMGQEYLNDCLDEKTSPNCPSSAPPRNGIVYLVLEGRRNVADLP LCPIAPLECQPPVEAASPGDGVAALIAFLLPEIALLPKETELSPGKCVASNKSDTRPL SATVSRASAAPKTTPLVAPQSPPQLRSRASYRPHLRGSSPARGHDAHLACASCTAPDA RRCASALR</aaseq>

Gene Sequence

<dnaseqindica>4289..4762#1608..2401#1217..1411#1..1132#atgcaagtagtgatatatcaaggtcaacccgagaatgagagtgatagtggggcaaccagtccaaccacagtaccgcctgatgtagagaatgatgatattggaggagggccaaatgatgactcatcaagtgatgaagacaatgatggtggtgtatatgacatagagcatgatcctggattgaggactcctatctcacaatatgatgtcaatgaccaagattcagttagaagggagtatattgcattgggcccttgtcaaccaaagatgaagaagggggattttccacagcatgagtgtggaggtatgcaccgcttcctgccaaaatggttttctgagttcaagtggcttgagtatagtgtgcatagagatgctgcatattgctttgtttgttacttgttcaaagatagcactaacaatcatggtggagatgcttttgttaatggaggttttagaaattggaacattaaaagtagatttagtaaacatgctggtgctgtcaatagtgctcattgtgaagctgaagagaaatacaatttgttcatgcaacctaagacatcaattcgtgagtcctttgcatcaaactctgcagagtttaaggttcaatacttagctcgcttgacatggtcacttaagtgcataagatatcttctgcggcaggggttggcttttcgtggtcatgatgagtcaaaggattctaacaacaaaggaaattttagggaacttgtgcaatggctagctgggaactttgaagaagttaataaggtggttctaggaaatgctccaactggttgtcaaatgatagaccataagattcagaaacaactcattggttcttgtgctcacgaaacaactaaacttgtcatagaggaacttcatgatgagtgttttgcaattcttgctgatgagtctagtgatgcctaccaaaaagaacaattggctctttgcttgcggtttgtcaatacgacggggcaaccagttgaacggtttcttggtcttgtccatgttgaagatactacatcattgactcttaaggaggcaattaagtctttgcttattaagtaccaactacccttatccaaggtacgtggacaaggatatgatggtgctagtaacatgaaggatcatattaatggtttgaataaactaattatggatgaatccccctcagcttactatgtacattgttttgcccattaacttcaactaacccttgtagctgttgctaaggagaatactgattgtgcatggttctttgggcaacttgcatatttgttgaatgtccttgggatgtcttgtaaaaagatccgcatgcttcgtatagctcaagctgagtatatgattgaagcattgaagttgggtgaaattgagagtggccaaggtctgaatcaagagatgggcttagcaaggccaggtgagaaccttgttacctccaatcctctatcatatctctactacatctctaaattgtactcactactttaattaacatatggtggcaagtgatacacgttggggatctcactacaagatagtaatgcatgtcatgcttctatatccttcaatcaagaaagttctattcaaggttgggaaagagtgtaatggggcagaggctataggagctcaaactatgctacaagtatttcagtcatttgagtttgttttcttgttgcacatgatgaatgaaatatttggatacacaagtgacttctgcaatgctctgcaaaggagggagcaagatattgtgaatgcaatggatattcttgagttcacaaaggcagaatttgatgttttgagagaagattgtggatggaaagaatttcttggaaaggtcacttctttttgtgtgaagcacaaagttaaagttgttgacatggatgggaagtataagcctatacaaagatcaaggaaattcttcagagatgctattaattaccatcgattccatgccgatatgtttttgggtgtcattgataggcaacttcaagagctcaataacagatttgatgaggtaaacacagaattacttagatgcatggcatcatttagcccagccaaatccttctctgcttttaatgttgacaacttagttaagcttgccaagttctatcctagtgattttgatgttgaagaaatgaaccaactcccctttcaactgaaccgctatattagtgatgtgggtaaggatgagaatttcacaaatttgagaagtttagcagacctatctatgatgcttgtcaaaacaaacaaggtttctcgctatgaccttgtttacagacttctcaaattggtgttagttctccctgttgcaactgctggtgttgagagggttttctcttcaatgaactatatcaaaaacaagttaagaagcaagatgggacaagaatatttgaatgattgcttggttacattcattgaaagggatttgttcttgcaagtcaaggataaagacatcatcaatcattttcaaaatatcaagaaacgaaaagttcttctctaaactgtaagatttcttatcattttgccattttgtatgctctaatatgcttaacacattcaatttatgatcaattttatccatccatctatgactatttgaaatcatgtttataccgttatgtaatatacaactattagacttgggttgaaaatttttttctatctcttctaatttcgaatacccaagttgaaaatcctgggcccacccctggttgctacctttcctagattattgatcaaattccttttggtgggttccaaaacaacctagaaggctggagtttgatttttcaaatatgcatctgaataaagagaattcgtataattaatcattgtaaatacagaaaaaaattacagcaaagttaattttttgaataaaaacgtgccatagaatggttcttccgagggtgctagctagctaggcaatgacgaacgcctgaagtgtcaaacctggaaagtggaaactagtcaaactacaattagttgaactttactatgacatgaaaaatcacttgcataatgaaatattacttacatttagatcagaagacaattaattttcatctttttaatattgcaaaatattaaatatattcatttcaatcaactttcagcataggtgcaatctgtaaaacagtgtgcaaatgcagcaaataatttagaacgactgagaacagaaaggcatatgggtacataactatatagattcaaatatgaacacaaacgtagacatattcatattcagctggataattgccataaaatattccatttgattatttccatcggtttactctgtacaatagtaaatattttcattataaaatcctcagctccggggagacatttctacaggcttaaagagccgctagcttatgaaaacatttccacaagtggcgtttatgccgtctgctctatgaaaatgctaacgatagttttctctaataaaagaaaatttggttttacttcctatggataaacaccgccgggaagatagccgggcagcgtcggctcctgagaagggatgtacatttaggctagatagaagaacattgttgggagggagagattagactaattgatattcattgcttaattaatcatagacacaatcacatccttatatagatggtgccaacttgatccctaactaagaacttaatcttatcttatctaactaataattttatctctaacttgattggtttgggctgcctataagtcttgacctacagcccaatacccatgacattacacccctccttttgagcagctcgtcctcgagctgcaacatagacttctaaacttaaatgacttcctagataaaacttaacataactcaagctgtttacatctcgacttgttacattactatgacaggaaaataaaatttgatagaagataatttgccatgccaatttgctgtctgaaaccactggcgggccccatccaaaagctttgagtgaaaggccgagtctatgccatggcaaaggcccaagctgactgctcatggcccaatgcatgatggcaagcagcatgtatctctttctcaagctataacttagggtgtgtttgagcagaaggggattgagaagattgggaagatacgcaaaacaaggtgagccattagcatatgattaattaagtattaactattttaaactttaaaaatggattatttttttttaaaaaacataccgtttagtagttcggtaagcgtgcgcgtgggaacgaaacaatctttatctctttctcgtgcgctcgaacgcaatcaatctgttcagccatgcaggacgagaagacctcgcccaactgtccgtcctccgcgccaccacgcaacggcatcgtgtacctagtgcttgaaggacgtagaaacgtcgcggacctaccgctttgcccaatcgcgccactcgagtgtcaaccgcctgtagaagccgcatcgccaggtgatggagtcgccgcgttgattgctttccttcttcctgaaattgcgctgctgcccaaggaaaccgagctgtctcccggaaaatgcgtcgcctccaacaaatcggatacgcgccctctatctgccaccgtatctagagcttcggctgcaccgaaaaccacgccgcttgttgcgccgcaatcaccgccgcagctccgatcacgcgcgagctatcggcctcaccttcgcggctcaagcccagcgagaggccacgacgcgcatctcgcctgcgcctcgtgcacggcgcctgatgctcgtcggtgtgcttctgctcttcggtga</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0233900, RefSeq:Os05g0233900