Os05g0238200

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Revision as of 10:12, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0238200| Description = Similar to Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven in absentia homolog 5)| Version = NM_001061529.1 GI:115462788 ...")
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Gene Name

Os05g0238200

Description

Similar to Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven in absentia homolog 5)

Version

NM_001061529.1 GI:115462788 GeneID:4338181

Length

4909 bp

Definition

Oryza sativa Japonica Group Os05g0238200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:8451634..8456542

Sequence Coding Region

8451634..8451972,8455714..8456100,8456183..8456542

Expression

GEO Profiles:Os05g0238200

Genome Context

<gbrowseImage1> name=NC_008398:8451634..8456542 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:8451634..8456542 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggacatggacagcgtggagtgcctctccctcccggactcgtccatggacgtggacgacgtcgacggcggcggctcggtgcaccaccaccaccaccaccaccacgccctcccgcctcacctccccgcgggggtcgccgtcggggtcggccccggggggcgcgcgttccccaaggcgaatgtcgctggggttggtggtggcggcgccgccggggcccccgcggcggggggagcggtggccggaggtgggggccccggcggcgggcctcccgccaccagcgtgcacgagctgctcgagtgccccgtctgcaccaactccatgttcccgcccatccaccagtgccaaaatggacacactttatgttcaacatgcaaggctagagtccacaaccggtgccctacctgcagacaagagctcggtgatattaggtgcttggcactggagaaagtagcagagtcactcgagcttccttgcaagtattgttctttaggttgcccagaaatttttccatactacagcaagataaagcatgaagcacagtgcagctttaggccatataactgcccttatgctggttctgaatgtgctgtggctggtgatattcctttccttgttgcacatttgagggacgaccacaaagttgatatgcacagtggctgcacattcaaccacagatatgtcaaatctaatccacgcgaggttgagaatgcgacctggatgctaacagtgttccattgtttcgggcagtatttctgcctgcatttcgaggcgttccagcttggaatggcaccagtttatatggccttcctccgtttcatgggggatgagaatgaagcgaggaactacacctacagcctagaggttggtggtaatggcaggaagatggtgtgggaaggcacccctaggagcatccgcgacagccaccggaaggtgcgggacagccatgacggcctcatcatccagaggaacatggcactcttcttctccggcggtgacaggaaggagctgaagctgagggtgaccggccgtatctggaaagaacagacgaacccggatggggcctgcataccgaacctttgtagctga</cdnaseq>

Protein Sequence

<aaseq>MDMDSVECLSLPDSSMDVDDVDGGGSVHHHHHHHHALPPHLPAG VAVGVGPGGRAFPKANVAGVGGGGAAGAPAAGGAVAGGGGPGGGPPATSVHELLECPV CTNSMFPPIHQCQNGHTLCSTCKARVHNRCPTCRQELGDIRCLALEKVAESLELPCKY CSLGCPEIFPYYSKIKHEAQCSFRPYNCPYAGSECAVAGDIPFLVAHLRDDHKVDMHS GCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDE NEARNYTYSLEVGGNGRKMVWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRK ELKLRVTGRIWKEQTNPDGACIPNLCS</aaseq>

Gene Sequence

<dnaseqindica>1..339#4081..4467#4550..4909#atggacatggacagcgtggagtgcctctccctcccggactcgtccatggacgtggacgacgtcgacggcggcggctcggtgcaccaccaccaccaccaccaccacgccctcccgcctcacctccccgcgggggtcgccgtcggggtcggccccggggggcgcgcgttccccaaggcgaatgtcgctggggttggtggtggcggcgccgccggggcccccgcggcggggggagcggtggccggaggtgggggccccggcggcgggcctcccgccaccagcgtgcacgagctgctcgagtgccccgtctgcaccaactccatgttcccgcccatccaccaggtgggtttgcgcccctctctctctccccgcgccttcgatttggggggacgttctgttctgtagcgcgcctggatttgaattgaaatgggcttgcgcttgattcagttgggtgcggatttgtgggtttcgattcgcaaacgcgggatctttgcggtagcttgctgtcgtttcgagttaattggcgtgttgttcgccaatttgatgcagttcgaattggggaaattatcccctctatatgattgggttgtgcgatttgggtaatcttaggctggggatttgaattaggcccattcggtttcgtcgactctattttcctcagcgatttgggggctttttttgtgagacatccttgctgatgtggtttatttgagaaatattttaaatgaaacgtaatttccgttttggatctgaattcgtgcgcgctaatgtccatcgtattccttgtgtgctggttaatttggacccttttgtcgataatttattgcatttgttgtttacccaagctccaaatgccttggaatactgggaaagaattgtccctttgcatacttgttagcttatcgatgtcaatgttctgtcttgttgttagtaatagttgattcttctaattattgggacctcgttgagatgctcccttcacaaatgggtgattaaccagtcttgctgcaaatttaatgccacaaaattcttccatttgatgcctcgataccttagttagtgatagtgtagactgcattaacaagggagaacattcatcttgatggaggtgagctggatttctaaagataactacacaagattgtggtctgttagaagttagacaactatcccatggaagacgctaataatttattttacctgattaattgttattatggttagtctggcactcattttatcgacttgataggttggttgttctgctagcttctttaggatgaacttgtccttgtaattgattagtaactatattctttttcccctagtttgtcctagtgggtgtagcactgatagtaacgcaagggagtgaagtcgcatagctaatttccattgtaatttggatacagtgcactgggttcatctccctcaatggctaagttttatgaaacaagttggtttagggttcctcaatctatcatgtcttttctatatggtccatttgatctgagctcttcttgctgatgtggatggagcatatcaatcagccatagcggtcactgcatcttcactggccttctcccttgagcctggccttcttccttcagtccttgctggctctggcctcctgaatcatttctatatatttctctgtagccaatgaatgttttggagggctctaattgaagcataatcttgtgtatcatggacatggtgaggtatggtccaaggattgaggatatggggcaatgggatactgtaggattcctcttaggctgttaattctttgcttgatttgaaaacactgcatggcttgatctgcaaatactaaacgtcctataaaattgtagtggttatgatattgtgtcaacaactaaagaatgagaagccaacaaatttacatagggtgtgtttagttcacgccaaaattggaagtttggttgaaattggaatgatgtgatggaaaagttggaagtttatgtgtgtaagaaagttttgatgtgatggaaaagttggaagtttgaataaaaagtttggaactaaacaaggccataatgcctactagtgatctttatcttctgctgccgcatgggaatcttactgagttgctgtgactgctgctttgctaaacgcaccctctctttgtcctcgagctatgactaaggtggctgcgatggaagcatggcaccatgcactaaacctgtactgttgttggaagaggaaaaacaaagtttcaaggaatgatggcagttcaagggaacacctctaagtgtctagacattaagaactctaaattgacacagcgaagcaactgcacccttgctaccatagcgtggttgtggcagagctgtgatgatggcatgataccctagaaggtaccaatcatcttctacagtgaggcaggtgataatggatgacagtgaggcaaatactaaggaagctcttccggttgttacagcctcaccattgttatgacgccctgacatgatgctgcatggagaactgtcaaaattggccagttagtggagcatttttttgctccatctcatgattcaagacgccactgatctcaagattcaatcttcttttcaggaggtactccaaattggccaatccttgtgtcatgagaactactagcaaggtaggatgcttgctatttgtcagttggtacggatctctccccacatgatggcctacaactaaaactctataaggctctgattcatgggtggagaagagtagagtagataactcctgtgtattcaatgccacaaatttttctgtaagcacctgtcacctaacaaaatagtcacctaacaaaatagcaatcaataatgtaccatctgtctgtgccaacaactacacgataaaagccaacaaaataggaaaagaatccctaaagcactaataagtaataatctttatcttatcttccgttactgcgtggagttctttcatgtgattgctgtgcaccctttcttggtccttgtcgtagggcaagccatatcaccacccttactagtttggtacattgttaatcaatattagtataattttattttgttccccaatgattattggtgacatacattgtcttatatacattgcatctgaagtaatagatgagcaagaaactatgattgagggtatgcacctgatgtaaaaggtacatttcaattttcaatatgggctgttcattgtgagaaaaaaactagcatagctaatctagtttgggttgcgtgtgttttgatggtgttcttatgttgttcatgcttagagatgatcagaattaggactatgatcatgcaaaattataatgatggacagtacatcaaccagccatctactaaacatctagggcctatttggtagcccatgctgctgcagccctgcaggtgcactgcaacagccatagcactaaggtacagcgctggtatactagttactgttggtatagctgcagccacagccccatcaagctatgctgaacagccctctagtctgaatatccaaatactacattaagtcgaatggtacacatcatccaatatatgcatatacagttgtgtcaactcagcttatttgcctcatttacctgcatatatttacatctgctagctacagtcttattagttccctcgaacctataaaaatgattatatatgtatgcaacaatttatctggcaaatgatcattattgtctttcctcacaatagattgatatggtagtactcacagagtcacatattgttctcttacacggtattgtatgatctttattctacaatagctgtgctaggcacataccagagatgaattcaccattctttatgtttaaatcctgttgctgcgtacactcctttcttttcttttctttttctaaattatatgtactttttatgtatcgaattttggaaaactacattccaaaggacaagttccaatctattgtgctgctgtcgaagcatcttttacagaaaaatcgataacgattatgttgcactagaaatattgggcctcatctaatatgtactactggcatagttttgttacttggttgtcactaattttatttttttacagtgccaaaatggacacactttatgttcaacatgcaaggctagagtccacaaccggtgccctacctgcagacaagagctcggtgatattaggtgcttggcactggagaaagtagcagagtcactcgagcttccttgcaagtattgttctttaggttgcccagaaatttttccatactacagcaagataaagcatgaagcacagtgcagctttaggccatataactgcccttatgctggttctgaatgtgctgtggctggtgatattcctttccttgttgcacatttgagggacgaccacaaagttgatatgcacagtggctgcacattcaaccacagatatgtcaaatctaatccacgcgaggttgagaatgcgacctggatgctaacagtaagtactataatagctcatagtattcatttttggatacctatttacaaacactgttcttatgatctttcctctcaatcaggtgttccattgtttcgggcagtatttctgcctgcatttcgaggcgttccagcttggaatggcaccagtttatatggccttcctccgtttcatgggggatgagaatgaagcgaggaactacacctacagcctagaggttggtggtaatggcaggaagatggtgtgggaaggcacccctaggagcatccgcgacagccaccggaaggtgcgggacagccatgacggcctcatcatccagaggaacatggcactcttcttctccggcggtgacaggaaggagctgaagctgagggtgaccggccgtatctggaaagaacagacgaacccggatggggcctgcataccgaacctttgtagctga</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0238200, RefSeq:Os05g0238200