Os05g0270200

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Revision as of 10:13, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0270200| Description = Sad1/UNC-like, C-terminal domain containing protein| Version = NM_001061592.1 GI:115462914 GeneID:4338258| Length = ...")
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Gene Name

Os05g0270200

Description

Sad1/UNC-like, C-terminal domain containing protein

Version

NM_001061592.1 GI:115462914 GeneID:4338258

Length

3222 bp

Definition

Oryza sativa Japonica Group Os05g0270200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:10894526..10897747

Sequence Coding Region

10894876..10895160,10896111..10897187

Expression

GEO Profiles:Os05g0270200

Genome Context

<gbrowseImage1> name=NC_008398:10894526..10897747 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:10894526..10897747 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcagtctcaactgctgcggttccaaccgcaaatacaaatgggaaccacgcgttgagtatggactcacattccagccaagatgttaggcggcggacggtagttgttgcaaggaagaaagcctcacctgagctccttgctgatggtggattcaatggtacctcatcagttgataagatcactgacaagaaggatcttagtcatactatccgtggagagtcagttcttggcaaatcaaagtatccattggaggcaagaaaagatgcaattgcctctgcagctgctgctgaccgtcaaaagaagagtggtgctaagcaagaaaaggccaagtgggaaatcgctctaagtgtgttgatgaaactttgccttctcatttcggctgtcgcttggatggggcagctgttctggagatggcaaaatggtgatttatcatttacaacactggatatggagagcaggctgtccaaagtggaagggttcaagaagacaaccaagatgcttcaggtacagctggatattttagacaagaagctaggaaatgagattgacaaaacaaggagggacatcacgaagcaattcgaagacaagggtaataagctggagattaagatgaaggcactagaaggcaagactgacaaattagataaatcacttgctgagcttagggacatgggttttgtttctaaaaaagaatttgatgagattgtggaacagttgaagaaaaagaagggtttggatggtactgttggcgacataagcttggatgatattaggttatttgccaaggagatagttgagatggagatagagaggcatgcagcagatggccttggaatggtggattatgcattagcatctggtgggggtaaagtggttaagcattcggaagctttcaggaaagctaagagctttatgcctagtcgtaatagtttgcttgaacaagctaagaaaatgctggagccaagttttggccagcctggagagtgctttgcactacaaggaagtagtggttatgtggagatcaagctgaggacaggaataattcctgaagcagtaagtctagagcatgtggacaagagtgtagcttatgatcgatctagtgctccgaaggatttccaggtcagtggatggtatgaaggaccagaggatgattcagacaaggaatcacgtgtggtgacaaatctaggagagttttcttatgaccttgagaagaacaatgcacagaccttccaactggagagaaccgcagattcacgagtcatcaacatggttcggcttgacttctgctcaaaccatggaaattcagaactgacatgcatctatcgcttcagggtgcatggtagagaacctggctctccttaa</cdnaseq>

Protein Sequence

<aaseq>MSVSTAAVPTANTNGNHALSMDSHSSQDVRRRTVVVARKKASPE LLADGGFNGTSSVDKITDKKDLSHTIRGESVLGKSKYPLEARKDAIASAAAADRQKKS GAKQEKAKWEIALSVLMKLCLLISAVAWMGQLFWRWQNGDLSFTTLDMESRLSKVEGF KKTTKMLQVQLDILDKKLGNEIDKTRRDITKQFEDKGNKLEIKMKALEGKTDKLDKSL AELRDMGFVSKKEFDEIVEQLKKKKGLDGTVGDISLDDIRLFAKEIVEMEIERHAADG LGMVDYALASGGGKVVKHSEAFRKAKSFMPSRNSLLEQAKKMLEPSFGQPGECFALQG SSGYVEIKLRTGIIPEAVSLEHVDKSVAYDRSSAPKDFQVSGWYEGPEDDSDKESRVV TNLGEFSYDLEKNNAQTFQLERTADSRVINMVRLDFCSNHGNSELTCIYRFRVHGREP GSP</aaseq>

Gene Sequence

<dnaseqindica>2588..2872#561..1637#agtaacagcgtaaatcccgttcccttggcccttgggcctcgccgcctcgactcccgtctcctcgcccggccggcggccgcccgtcgcctgcgccgatctacaacccgcgagcagcggtcccactgcttccgccgccggtggcggtgaggtacctacgcacatcccctttcccatccatctctgccttaaccctaatcttctcttctagatctggaagcgtttctctttaatttgccttcaccctagtactaacagcagttacacttttggggggaggttcgatcgactgaaccccctatgtcctgatgtcccacgccacgttagatccgcccctagcacgctatgagaataaaatagttctgtttgatttatgcttcgtctcccatgttactctgcgcggataatagatttaccagttctcttcgtgctagaatgtgtagtattttttttttttgcggggaagaatgtgtagtaattcgctatggtttcaaatttcaggtgcatcattgcttccagcttatatcatctagttctcccgtttgtaccttgaggggacaacaatgtcagtctcaactgctgcggttccaaccgcaaatacaaatgggaaccacgcgttgagtatggactcacattccagccaagatgttaggcggcggacggtagttgttgcaaggaagaaagcctcacctgagctccttgctgatggtggattcaatggtacctcatcagttgataagatcactgacaagaaggatcttagtcatactatccgtggagagtcagttcttggcaaatcaaagtatccattggaggcaagaaaagatgcaattgcctctgcagctgctgctgaccgtcaaaagaagagtggtgctaagcaagaaaaggccaagtgggaaatcgctctaagtgtgttgatgaaactttgccttctcatttcggctgtcgcttggatggggcagctgttctggagatggcaaaatggtgatttatcatttacaacactggatatggagagcaggctgtccaaagtggaagggttcaagaagacaaccaagatgcttcaggtacagctggatattttagacaagaagctaggaaatgagattgacaaaacaaggagggacatcacgaagcaattcgaagacaagggtaataagctggagattaagatgaaggcactagaaggcaagactgacaaattagataaatcacttgctgagcttagggacatgggttttgtttctaaaaaagaatttgatgagattgtggaacagttgaagaaaaagaagggtttggatggtactgttggcgacataagcttggatgatattaggttatttgccaaggagatagttgagatggagatagagaggcatgcagcagatggccttggaatggtggattatgcattagcatctggtgggggtaaagtggttaagcattcggaagctttcaggaaagctaagagctttatgcctagtcgtaatagtttgcttgaacaagctaagaaaatgctggagccaagttttggccagcctggagagtgctttgcactacaaggaagtagtggttatgtggagatcaagctgaggacaggaataattcctgaagcagtaagtctagagcatgtggacaaggtaaggttattgcgtcatattgtcttaattcaatttaacatcactctgtcctaccttgcattgcataattcatcttattttgtgcgctctctactctcattctgcttataatgctggtgcatcaattgaaaacttccagaattttttttttaatttgtgcatcaaataacattacatttgtagaaataccacctcaaaacaggttatttgtaacatacccctgctaagatagtatatcttatatatggcactgaagcagaacccaaatatgtaatatcttttgctgggtgatcttagagttatgccacaacttgtcaaaggaacacaattatttctgtaaaatgtttaaaaccaaaaagatcaccactctgtgataactatttattgctggaatggaaattttcctatgttttggaggcaaaatcaaattggtggaacaatcctgactgaaatacaggcaaattaccaaatcattggatcagtatttctccttatgtgttgagaagtagtttaattgtattatgtcaaggtccttgaggttaactcctgcatgctaagatatgacacatcgactctgctagtctgcatcctaccttcaatggatgaaaaaaaatgcaatgatatctcaattattgtccagttgcatcaatgtattgcgtaaagcatcagtatttgattccgctagtaaaattgtgagtcctcttcattagtaatgattttcaagccatgggacagaaatcctttttgtcttcttttggtagacataactggttattcccttctgtttgttaatccagaacattatattcttgaacaatctgtgtttgttagctccgtaatcttatattcttatgtcctttattttcttgagtctgacttctgctcctttttcctatgctaacttatgaagacttctgtcctatgctaacttatgacttgtctgggtgcagagtgtagcttatgatcgatctagtgctccgaaggatttccaggtcagtggatggtatgaaggaccagaggatgattcagacaaggaatcacgtgtggtgacaaatctaggagagttttcttatgaccttgagaagaacaatgcacagaccttccaactggagagaaccgcagattcacgagtcatcaacatggttcggcttgacttctgctcaaaccatggaaattcagaactgacatgcatctatcgcttcagggtgcatggtagagaacctggctctccttaagctgctgcagtgaaagcctgatctgagagctgcatgcctgagtttgacaacatcctcaggcttcaatatacccagtaagacaatgattctagtccactggattgactgttagaagatagaagtgtggtgcggctccatctgactcaggttgattttactctgtatcataatgccatgaaaatatgctgactcgcagttctgctagctagatgtcacacttgtttgtatctgctcactctgatagtctgattgctctttggtatggttgtattgtaattggtagctatcctgttatttacaactttagtttattggggtgtattcattcggtgactcgtgggcatggaggt</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0270200, RefSeq:Os05g0270200