Os05g0316000

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Revision as of 10:15, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0316000| Description = Zinc finger, RING-type domain containing protein| Version = NM_001061707.1 GI:115463144 GeneID:4338390| Length = 528...")
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Gene Name

Os05g0316000

Description

Zinc finger, RING-type domain containing protein

Version

NM_001061707.1 GI:115463144 GeneID:4338390

Length

5282 bp

Definition

Oryza sativa Japonica Group Os05g0316000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:14566231..14571512

Sequence Coding Region

14566308..14566413,14566815..14566918,14567193..14567270,14567389..14567553,14568411..14568499
,14569124..14569292,14569730..14569806,14570842..14571445

Expression

GEO Profiles:Os05g0316000

Genome Context

<gbrowseImage1> name=NC_008398:14566231..14571512 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:14566231..14571512 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagccaccggcgggaggctcctccgatcatcgccggggtgccgggaccggcgcgggcgccggtggggccgcctcgccgtcgggcctccgccgctacggcttcagattctccgcctccagcctcctgcaggccccgctcgctgcgctgctcgagtactccggcgtcgtcccctccggccccggcgccccgcaggcggggccgccctcggcgctgtcgtcctcgccgtcttcttcgtcgtcgtcgtcggaggccgatgggctgctctccgcggccgcggctggggacggggaggtctcgatccggatccagggcggccccggggaggccgacgcggcgggcgtcgcgggggcggcctcgtcgggggaggactcgatcgaggcgaccgccgccggggacgttgacccggcctcggctgccgcggggaggggtggcggcgccgacgcggaggcgagtggtgggggcgcggacggcgcgtccgggaacgggggtggggaccgcgcctaccagcggtatgacgtgcaccatgtcgcgaggtggatcgagcagatactgccattctcgctgctgctgctcgtcgtcttcatacggcagcatctccaaggtttctttgtcacaatttggattgctgctgtaatgttcaagtcaaatgatatattgcggaagcaaactgctttgaagggcgagagaaaaattgctgtgcttgtcgggattacagtaatcttcatgattcatgtgtttggtgtctattggtggtacaggaatgatgatcttctcagacctctgttcatgcttccgccaaaagaaataccgccattttggcatgcgatttttatcatcatggtcaatgatacaatggttcgccaggcagcaatggccattaagtgcatgctacttatgtactataagaatagcagaggtcgtaactaccgtaagcagggtcaaatgctaacccttgtggaataccttctgctcctatatcgtgccttgttgccaactcctgtttggtaccgtttctttctgaacaaggaatatgggagtcttttctcatctttaaccactggactgtacctgaccttcaagttaacttcagtagttgaaaaggttcagtcattcttggctgcagtgaaagcattgtcacgtaaagatgtgcattatgggtcttatgcgacagcagaacaggtaattgctgctggtgatatgtgtgccatctgccaggaaaagatgcatgttcctgtcctcctccgctgtaaacatattttctgtgaggactgtgtctctgaatggtttgagcgagaacggacttgccccctgtgtagagcattggtaaagcctgctgatattcggtcatttggtgatggttctacaagtcttttcttccagttgttttag</cdnaseq>

Protein Sequence

<aaseq>MEPPAGGSSDHRRGAGTGAGAGGAASPSGLRRYGFRFSASSLLQ APLAALLEYSGVVPSGPGAPQAGPPSALSSSPSSSSSSSEADGLLSAAAAGDGEVSIR IQGGPGEADAAGVAGAASSGEDSIEATAAGDVDPASAAAGRGGGADAEASGGGADGAS GNGGGDRAYQRYDVHHVARWIEQILPFSLLLLVVFIRQHLQGFFVTIWIAAVMFKSND ILRKQTALKGERKIAVLVGITVIFMIHVFGVYWWYRNDDLLRPLFMLPPKEIPPFWHA IFIIMVNDTMVRQAAMAIKCMLLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTP VWYRFFLNKEYGSLFSSLTTGLYLTFKLTSVVEKVQSFLAAVKALSRKDVHYGSYATA EQVIAAGDMCAICQEKMHVPVLLRCKHIFCEDCVSEWFERERTCPLCRALVKPADIRS FGDGSTSLFFQLF</aaseq>

Gene Sequence

<dnaseqindica>5100..5205#4595..4698#4243..4320#3960..4124#3014..3102#2221..2389#1707..1783#68..671#aggggcctcgtctcctcctcctccgcctccgccttgtagggtttcgccgccgccgctgccgccggcgatggagccaccggcgggaggctcctccgatcatcgccggggtgccgggaccggcgcgggcgccggtggggccgcctcgccgtcgggcctccgccgctacggcttcagattctccgcctccagcctcctgcaggccccgctcgctgcgctgctcgagtactccggcgtcgtcccctccggccccggcgccccgcaggcggggccgccctcggcgctgtcgtcctcgccgtcttcttcgtcgtcgtcgtcggaggccgatgggctgctctccgcggccgcggctggggacggggaggtctcgatccggatccagggcggccccggggaggccgacgcggcgggcgtcgcgggggcggcctcgtcgggggaggactcgatcgaggcgaccgccgccggggacgttgacccggcctcggctgccgcggggaggggtggcggcgccgacgcggaggcgagtggtgggggcgcggacggcgcgtccgggaacgggggtggggaccgcgcctaccagcggtatgacgtgcaccatgtcgcgaggtggatcgagcagatactgccattctcgctgctgctgctcgtcgtcttcatacggcagcatctccaaggtctaatactcattctcttgtgctcgtgccattgtgtgattataagcggtgtgacttgtccaaaacaaaatcgattttccttcatgttgatgtccatatattgtttattacaaatgtttaaccaaaaaaggaaagtgattttgtgagtaaaacaccttgacttaggcgagttaatgtttgtgattaggctggtctatattattattatgtgttaacttaacatctatgttaaccatttgagttcctgggatactattttgtttgttattttttttatcattatggtttagaggataatatgatcacttgattatagtcgacttatctcatatagtgggttttagcctgctttattagatgaacctaatggggagatatttatagcttggtattgctagttagctgccctaactttaaacaggacttgctcaagcccggcttcttatattaggttggaacttctctttgtgctacattatctggaggatattgtggttgggtaccagtcctaactcctaagttatggatcagatgacatatctgcgtttagttgtttaccatgacatgaattttctgctacatgattatctcctagtggtcttgaaatgatgattaagacgcatatatcatatcaggttcttagcttttaacatttattcctttggaggccgcaccaatcaactcataatttatgtgtttatgtgccaaccatttttttggcaaggcctaatgatgatacattaatattccagcagctagttgtatccaattatgcaccgcttcaattacttgcagttcacaatcttggatgttatattcatcttgccttatccattcatactatcctttacttttcaaagtgcatgccctctatcatttctgccactacaaccaaattgtttttttcctgtcaagaaaggtcaatggattgagttaacatataaatccatctttcaattgcatatctatttttgcttgtgcaatgattgccatgtaagcatttcaatacacactaaaggaagggttgttgtgcaggtttctttgtcacaatttggattgctgctgtaatgttcaagtcaaatgatatattgcggaagcaaactgctttgaaggtcttatttcttgatgcatcactttccaattttgcaatgaaattattttagtataacagaatcagaagactactggccagacctttccttctggtgtcataaatttgaatgccaatgactacataacaatataatcatgcattgtactaatgcagtgaacatcacatcattgtgaaatgatgaatttcctgaactacacagcactttattacccagtttggaaagtagtaaagagaataacatttttatctactcttagcttttcctggatcacatttaccattaattaatctagtagcaggttagtcatcctatctctagtaacagttaggtcaacctatgtaccatatttgttgtgaaactagttgaagctacttgttaaattgctaaaatacttgtcaatagcaaatttttcatatttccaactctttttgcagggcgagagaaaaattgctgtgcttgtcgggattacagtaatcttcatgattcatgtgtttggtgtctattggtggtacaggaatgatgatcttctcagacctctgttcatgcttccgccaaaagaaataccgccattttggcatgcgatttttatcatcatggtcaatggtactgatgcttccttaaagggtttcttgaatttgctcgcatgcatttctccattatctgatagtgaactctgaccatatacatagaagtacctttattgacctgctagattaaaatttattgccctttgtaaatgtatgtacaatgagcaattttgtctcgtttttcatatcatgaaaaatcattcaaaatgacctttttttacttcactttctgctgctttttaattcaaggctttgtgttgaactcattagtttctcggtttgtattagcctttcgaattcccagcaaatttaaagatgctcttcagttaaatgtgtgatgaaaactaatcatttaataaatttatttgtacacttagatcattaaatgtgctagaaatttttgaatgcctgaatggcacaaaatttatggtgttcaattcatagtttcaaactgctaaaattacacaggcaacatagatttgttttagccaaaaaaggttcatattagctgtatggcactatcttcatttacttaaagaagtatgttttctaggattgcagggaaaaacattttaagttatctgttagcacaatttatttcatgttgcagttggcatttctaaccaaatgccacttgcagatacaatggttcgccaggcagcaatggccattaagtgcatgctacttatgtactataagaatagcagaggtcgtaactaccgtaagcaggtgacatttttttctaattgtcataaatttattttgtgattttatcatcatgtttatagcatcttgcctttagttgttggttctacctaacttctaatgataatcaatgcagtgattactatgctggttagagattgtagagatctagccaaactagtgaagtgatcgcagccatcaaaattcaaaagtaccaacacttagtatatgtgggtgcttttgtgacagcaccctttctcccacactgaattatctttatttccacatatccaatactgagtatatattgactagaaactaatcataataactgaatgctgaatgatattgtatttctatgctgggctatctttatttaataactgcatgtctatgactatacaattatttttatccccttaagttttgatctactgaattagtctgtgtagcagctcaatgcttagacatcttcaaatgtgtccactagaaaggggttctatatcccaaatacttagctaagaatggtagttttttctccataattctgaaacagtttgaaaaatagtttagtagatgcactaccaaatagtcaagtatacatcatgtattcctatagttctgttggcttcatgtgccatgtgttcgcaagtaacactaggatataacttattttggaaaaaaaacttatgagggtcttttgcatgaagtgactagtttttccattgttactttctttatctttgttattttattttggttctaaaggtgcatgtctcattatcttgaattctagcttatttcttattttagatccttttatagttgcaagcttagtagttggttctgacttctgaggctcaaactttctgttttgctagggtcaaatgctaacccttgtggaataccttctgctcctatatcgtgccttgttgccaactcctgtttggtaccgtttctttctgaacaaggaatatgggagtcttttctcatctttaaccactggactgtacctgaccttcaagttaacttcagtagttgaaaaggtactacttttactagttactgtagctcacatacaaaattagtgctgtgaacctataaaatatatattttttccattccatgcatgcttattttctcattgttgactgtatgttccaggttcagtcattcttggctgcagtgaaagcattgtcacgtaaagatgtgcattatgggtcttatgcgacagcagaacaggtaaacgttcatctactggcaagttgctcaacttaaaaatgcaatatgccataactattgataaatcgtaagcatttgtaggattttgtaatagtacaataagatactatcattttatcgataaaccatacagctttcagccatcaggcttatttgtggagccaactgtccatttaacacgtattcgctagttggtacttggtagcaggatacccccttgaactctcactctatcttgtttaaagaacttgttttttgctggaacctggtgcaggtaattgctgctggtgatatgtgtgccatctgccaggaaaagatgcatgttcctgtcctcctccgctgtaaacatattttctgtgaggactgtgtctctgaatggtaaattcttttcttattttatacttttttacatgctttatttggttctttgggcctttgttttgaattgagcaaggtatcttgttggatatggcaacatattcatgtttattcttaacattggcgtgaagcaatctaagaatggcaattagattttatagtatgagaagaggatgtggagtgatatttctgtggcatcttgtcacagtcttgccttttatatgactactgcttttggtgatgctgcagaagatatattcctaaaatgactaatgagaattcagttgcatgaacataaattccttatcagatgaagtgcctcaatgcttagcttttcctttttttccccttaatttgagcaagtatcaagaaatgacagctttttcctggttctgttttaggtttgagcgagaacggacttgccccctgtgtagagcattggtaaagcctgctgatattcggtcatttggtgatggttctacaagtcttttcttccagttgttttagacaccaaatgggaaactgctaacatataacaatggacaagcaattgcttatgaaaatccaagtgaatcctttttttc</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0316000, RefSeq:Os05g0316000