Os05g0327100

From RiceWiki
Revision as of 10:16, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0327100| Description = Armadillo-like helical domain containing protein| Version = NM_001187426.1 GI:297723982 GeneID:9268078| Length = 716...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os05g0327100

Description

Armadillo-like helical domain containing protein

Version

NM_001187426.1 GI:297723982 GeneID:9268078

Length

7165 bp

Definition

Oryza sativa Japonica Group Os05g0327100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:15159318..15166482

Sequence Coding Region

15159318..15159360,15159401..15159501,15160726..15160827,15161595..15161642,15162970..15163513
,15163594..15163772,15164029..15164133,15164218..15164382,15164475..15164936
,15165038..15165160,15165613..15165744,15166384..15166482

Expression

GEO Profiles:Os05g0327100

Genome Context

<gbrowseImage1> name=NC_008398:15159318..15166482 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:15159318..15166482 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggctgaccacgaagtaggaggtctctacccgatcgacttagctagcgacgtcgacgacgacgaggacagcggcaaggcgatatgggatgatctcgcttctgaaatcggcggcggcgccgccaccgtggatactccggcgacgcccaccggtctcataccactgtcgacagacatcactggaaaggaggatggggtggaccactcccaatcgtctcctctggctaccgcaactggaaaccatatggagggggtggcagtggctgatctagtaaccggagcagctaaaggtgaggatatccaatctaaagcagagatccaacctgcttgtgggactctaaaagagcaaccatccaaagctgtttatggaagctgcatttctggtcaaatgtttggactacaggattcacaatatatattggccaagccatcctcatctgaaagattctataatcataactctgatgccattggatccaaccatctgaagcttcatagacaaataagtgctgatggaaacgctgaatctaggttagaactgaacaaagatgctattggagttttatcaggtgaaaagagtccattagccaaatcaggaaagcagattgagcaacttatggtgaatgatctttctgctcatccatacaaccctgtgtgtcctttttctcaaggtgttagttattacagttcatcttcccaacacattgtgagctcatcaggagaagtcaaatatattcgaaattcaggtcaagaaatgcaaattgcttgtgatattgtagaagaaccatcacatatagctttgtatgggagcaagaacccttatgaattgactgggctcgggatgaacttatcaaccaatagtgctaaagaaaataatgaatacaaccaactgaagcttcagaagcaaattgatggttatcagaggtttgaaattggctcaggactgaatatggatgatgctgatggcgatttaactgcaacaggggttccacaaaaagtgcaggatgggaaaaatatgggatttgacaatgttgcggataacaaccctagaatgtccgtgcctcacaacactgttgtttccgccaggaatgcaaggaaccaatctcccaccatgagtggtatggctgcaaggcaaccatcacaaccattcctgcatgctaatgttgcagaaacaaactcaccttttggtcaccagtttgcagacaacttgctcctcaggttacaacacaaccatcaaacatatccctacatgggagctacaaccgcagcctatggattagatctgttgggtgggacaatgataggaaaagatgatttaaaacataaaaatcttcatggacaaattggttttcatgaaaatgttgcatctcactattttggcatgaaccctgagttgccaaggatatcatcttttctacaccagaaatgctctgaattcttacaacttaatagtgatgcaatgagatgtttaaccagggtagaaaaacaagttgagcaatctaccataataggtcctcctttcccttctgtgacagtacccagtcctttgtcagtaaatcatctttcttccatgtccaggggttattgtttaggctataaggatcctaataaccagggtattggtttttctccaatgtacgaaccaagtggattcaatactaattacaccttgcctctgagaatggaagcacatgcaatggaatcctatgacatagatgctctatctaaagccactagacaaagctgccaaaggaaacaatatagacaccttgagagacatcataagaaaatcgttgcatctgaagcacaggcgctacatagcaatgttgagactcctatcaggatgaacaaagctaaggaattcaatgaaatatgtgggagccgctttatacaacaaaagcttcaaaatgcgacacctgaagagaaattcatggtctttgaagaaatcatgcctgatgctattgaattggtgatggatatctatggaaattatgtgctacaaaaggtggcaacaggaaagagtttcaccggttcctggagtagcttcaatgctggtgaggtagtccaaggcagtgcaggagtggttgatggaggcagtggctag</cdnaseq>

Protein Sequence

<aaseq>MADHEVGGLYPIDLASDVDDDEDSGKAIWDDLASEIGGGAATVD TPATPTGLIPLSTDITGKEDGVDHSQSSPLATATGNHMEGVAVADLVTGAAKGEDIQS KAEIQPACGTLKEQPSKAVYGSCISGQMFGLQDSQYILAKPSSSERFYNHNSDAIGSN HLKLHRQISADGNAESRLELNKDAIGVLSGEKSPLAKSGKQIEQLMVNDLSAHPYNPV CPFSQGVSYYSSSSQHIVSSSGEVKYIRNSGQEMQIACDIVEEPSHIALYGSKNPYEL TGLGMNLSTNSAKENNEYNQLKLQKQIDGYQRFEIGSGLNMDDADGDLTATGVPQKVQ DGKNMGFDNVADNNPRMSVPHNTVVSARNARNQSPTMSGMAARQPSQPFLHANVAETN SPFGHQFADNLLLRLQHNHQTYPYMGATTAAYGLDLLGGTMIGKDDLKHKNLHGQIGF HENVASHYFGMNPELPRISSFLHQKCSEFLQLNSDAMRCLTRVEKQVEQSTIIGPPFP SVTVPSPLSVNHLSSMSRGYCLGYKDPNNQGIGFSPMYEPSGFNTNYTLPLRMEAHAM ESYDIDALSKATRQSCQRKQYRHLERHHKKIVASEAQALHSNVETPIRMNKAKEFNEI CGSRFIQQKLQNATPEEKFMVFEEIMPDAIELVMDIYGNYVLQKVATGKSFTGSWSSF NAGEVVQGSAGVVDGGSG</aaseq>

Gene Sequence

<dnaseqindica>1..43#84..184#1409..1510#2278..2325#3653..4196#4277..4455#4712..4816#4901..5065#5158..5619#5721..5843#6296..6427#7067..7165#atggctgaccacgaagtaggaggtctctacccgatcgacttaggtcggatggacatgatgaccgcgcttggcttcgtcggcagctagcgacgtcgacgacgacgaggacagcggcaaggcgatatgggatgatctcgcttctgaaatcggcggcggcgccgccaccgtggatactccggcgacggtgagttctaccaatggatgcattcatggtcatgcatgtatctgcttagtggttaatttttgctggctagctggatgtgttgtcagatttattgtgctgctagctgttttttaatcacctatgcgattaaacaggtggtcaggtagccagctatagctaggtaatgtactcctactggaatgaattaatgtgtgctagttttatccttttttcagcgttgcatatttgactgttgtcacatgtatgttatgtatggcatgtacttcatttttttacttcaattcatttattttcttttttggacccgtatattaaatatgtactttaaattttaaaaaatatttattaagggatgcactaaaatgcaccgagaaagcgtaataactaaaacacgtccttcacatagtacttttttactatatgttatatgttttcaaatacatgatagcacaaattttactaataggcttaataggggaatttgtgatgatttcactctcagtaaaaaaaattactaacattgagtgtatatattaaatatgtactttaaattaaaaaaatatttattaaggggcgcactaaaacgtatcgggtaagcgtaataactaaaatacgtccttcacatagttcttttttactatatgttatatgttttcaaatacatgatagtacaaattttactaatcgtcttaattggggaatttgtgaggatttcactctcagtaaaaaaatttctaacattgcatgtgtgttttacctataacatacccagggtatagtataatatgtctatattttttaaatacaattgttcataataatagaatgtactggatgcattgaccactttttgaatgggaatatctggtgcaatttgtggaccatttaggccatgtttggcacacttggttttaaattaaattatagtgttttatacttttatattttctctaaaataggaataaattaatttatccaagagatccagatctaaggattcttggctatcgagcagtggcacaagagcccaataaatcgtcaaagtatctaaatgaaaattccaccagatatttaaaatgctactaagcctttgggccttgctttgtgattacactttggtccaaaatgggcccagaaaaaattgccagagccaaaaggggatagaggttggacttagttgctaagcgcgctgtgcgcgggggtggcattggttacgtgccatagcccaccggtctcataccactgtcgacagacatcactggaaaggaggatggggtggaccactcccaatcgtctcctctggctaccgcaactggaaaccatatggtttgttccttttcggtcccagttcccttatttacgtgccttttattctatttaattacatactattgagtacttgctttgtgggtgcatagatggaattgttttgtgtggtctgccacaggaaaggctctaaccaatttatcattccaaagtgttgtgataattagtatgactaactaaatatttcatatcataaataagaactttcttaatatatttcatcatatatttgtgtttccaaaggtgttttatctaattttgtatatcaactagtaatacctattaaaacatgtctatagtggtttgatatgtctatagtggtttgctgttgtttgtattggtaagacactgggcactgcaacaaaggataaattgcccttcatgaaggcaataaaggataaattgcccttgtcaaagataagtttgcactgtcatcaatttacatttcactttagaaataggatacagatggattggaagctggacacacaaaaagttcccaaaaggcgaaaaccatgattgttcacgactataccagctgtccatgtccacctcttttgatatgcgaaatgactttttttgccctcattttcctatcaagtagtactaagtccaaacctccaaagtattttatttaataggaagcatatctccttctagactgaaagcctagcggtggggcggtggccaggctatggccgccgccccaccgcgggagagaaagagggttgtgggctagtggtggggaggctcatttttgccgtcaggagggggtggcagtggctgatctagtaaccggagcagctaaaggtgaggtaggagtggtaggataggggattcctaccaaagttgaggatggcagtgagacaacagcagtagaagtagtgggggagatggaggttggaggtggtggagagggcttggccggtggatcttgacggtgtcttcgtggtgctggcgtggcaaggtcttatcgtggaaaggagtagtggcggtggggtggtttttgcggagatcaggaggagagagaaaggctaggtgttatatttgttgcatgaatcacaaaaaatccttgatgtctgtgatttaacaacatatcaggtgactgatgattactcaatccttgtaaattgtcttgagacaagtaattagtaactagcaaagataccggctctgatatataagaaaatatagctttgctagagaacataatccctccggttccatattaattgacgtttaagataagattgaggtcaaacttttataactttgaccatcaataactttaaaaatatttagtttaaaggaattagaacaacatatatagatttatttattatatatattatagtagaaaaataagatcaaagatatattttgtagaccgtgttattgtccaaaacgtcaattaaaatgaaaccggagggagtagatccttatttttctgttatggtactaggatttgttgctaatttattgttgttttcattattataacaactacttccccttatttgatttcttttcttatgagtctgttacactatgatcaacaattattttcattgacagtattgctattcaattatattcatcatatttgtattcctgctagataacattttgaagatacaccaataacatattaccttgtgaccattcaaaacatttattacttattcttgttgtgccagatatccttatctctatcaagaggggaaaattatggtcatagtattgtttacctttcttaatatgtttgtctgacttgatttatacaatgttcttgtgttcaactaatgaaaacgttaggatttcttccttttgtgagaaatattaattctagttttttcatctactatctaatcaaatgatattcatacaatgcattgtttcataatatggcaactactccagcatctctaccgcaatcaagagtacaataatgtgcaatatattaaaataaccatttggattatgggattatttaacattgatattttgcatgtcatctatgcaaagaattacatcaatccatttctattaaaacatttctccttcctactcaggatgtctgagatgaacgcacatctactttagatgaaaaggtacctattgactgacatgcacttttctcaggatatccaatctaaagcagagatccaacctgcttgtgggactctaaaagagcaaccatccaaagctgtttatggaagctgcatttctggtcaaatgtttggactacaggattcacaatatatattggccaagccatcctcatctgaaagattctataatcataactctgatgccattggatccaaccatctgaagcttcatagacaaataagtgctgatggaaacgctgaatctaggttagaactgaacaaagatgctattggagttttatcaggtgaaaagagtccattagccaaatcaggaaagcagattgagcaacttatggtgaatgatctttctgctcatccatacaaccctgtgtgtcctttttctcaaggtgttagttattacagttcatcttcccaacacattgtgagctcatcaggagaagtcaaatatattcgaaattcaggtcaagaaatgcaaattgcttgtgatattgtagaagaaccatcacatatagctttgtatgggagcaagaacccttatgaattgactgggctcggtaatcctcatgataaattcaatgccccatctttttttttgaaggagtcaatattagtagcatctctagcacttcatcagggatgaacttatcaaccaatagtgctaaagaaaataatgaatacaaccaactgaagcttcagaagcaaattgatggttatcagaggtttgaaattggctcaggactgaatatggatgatgctgatggcgatttaactgcaacaggggttccacaaaaagtgcaggatgggaaaaatatggtgaacactctttttgttaaagccgtaccaacctgtatttaccgtcttacatggtactagttacagtttatcttcactacacccaaataagttgaaccagttgctagaacatcctgagtaccattcaaggttacattgcatccaaccttcaccgcaaccaatcatcaaagatgtatcaacatcaatgacactctatgttaaagaaccatgctctcaagaaaatttttatttggcggacaattttcctagtcttcagggatttgacaatgttgcggataacaaccctagaatgtccgtgcctcacaacactgttgtttccgccaggaatgcaaggaaccaatctcccaccatgagtggtatggtgcatgctgatgttttagaaatctactactctttggatcagcagacttcagctaacaatatacaaatttagtatgctcttcaggctgcaaggcaaccatcacaaccattcctgcatgctaatgttgcagaaacaaactcaccttttggtcaccagtttgcagacaacttgctcctcaggttacaacacaaccatcaaacatatccctacatgggagctacaaccgcagcctatggattagatctgttggtgatttctagatggagctgttcaagccatcctcatctcacataactagtaatgatgttatttctggtgcattgccaaagatcaacttgcagggtgggacaatgataggaaaagatgatttaaaacataaaaatcttcatggacaaattggttttcatgaaaatgttgcatctcactattttggcatgaaccctgagttgccaaggatatcatcttttctacaccagaaatgctctgaattcttacaacttaatagtgatgcaatgagatgtttaaccagggtagaaaaacaagttgagcaatctaccataataggtcctcctttcccttctgtgacagtacccagtcctttgtcagtaaatcatctttcttccatgtccaggggttattgtttaggctataaggatcctaataaccagggtattggtttttctccaatgtacgaaccaagtggattcaatactaattacaccttgcctctgagaatggaagcacatgcaatggaatcctatgacatagatgctctatctaaagccactagacaaagctgccaagtatactttgattctgaagaatggagttctcaatgtgttcaagaaatggactagatgaagctacaaattcgaacatgttgactgcttaacaacaacctcagaggaaacaatatagacaccttgagagacatcataagaaaatcgttgcatctgaagcacaggcgctacatagcaatgttgagactcctatcaggatgaacaaagctaaggaattcaatgaaatagtaagggatcaagaagcatgcttcctttcattttatcatcctactcctattccatcccatgtcttgaatatgttgcattggtgcttcggtattgatatggaaaggaaaatgccattgccaagaggtatccaacacaatgctatggtacaccaaggtttgctcatcagaatgatacattaggtttcagaagatcttatgtggatttccctcacagagattatctcaaaaggttggacaataaggagctaaatgccctgctattccaaaggaagtttagtggtttaagcaaagggaattatcggctttttcacatacaacgctatctatttcaatgcaggtttgtcctctttgattgcagccgagaccctcctaagcattcacatgcatgcaagacttttcccgatggttaaattttgctattcttttctattttcttttttagcattgattagtgtgggagccgctttatacaacaaaagcttcaaaatgcgacacctgaagagaaattcatggtctttgaagaaatcatgcctgatgctattgaattggtgatggatatctatggaaattatgtgctacaaaaggttttaattgcaattcttttaattttgatgattttggtaaacactactaaattcacacacttatacgctttacattttctactagatacacattacctcattttaaaggaggaaaattaccacatgctttcttggaagtgttttaagcataagctatcaaatgtatggatctagggtaatccaaagggtaatgtgtatttcccatatctaatatcacttcaacctattgcatatctgatttgtgtcatgtacacaagatctatatcagagtctattattttctttagagggaaaggggggggggtcggagggaaggggatcggtcgaatttgacaccttgaatggctatgtccaacctttcacttgatgcatccccatcgatgacaattagttaggacacaactttaccaggtaagagttggccttcaccgtagccacctcagctagaaagtagggtgggtgggtgtggccatgtggtggatggtgatgattactgttgggtgtcaatatggtcgacttggcagatctagtagtaacctgagatggatagatggcagacatagtggaagggtggtggtggaggcattatgcaggagaatgtaggcaactttggcatcaaatgtgtctcttacacaataggtggcaacaggaaagagtttcaccggttcctggagtagcttcaatgctggtgaggtagtccaaggcagtgcaggagtggttgatggaggcagtggctag</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0327100, RefSeq:Os05g0327100