Os05g0373400

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Revision as of 10:18, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0373400| Description = Paraneoplastic encephalomyelitis antigen family protein| Version = NM_001061902.1 GI:115463534 GeneID:4338600| Lengt...")
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Gene Name

Os05g0373400

Description

Paraneoplastic encephalomyelitis antigen family protein

Version

NM_001061902.1 GI:115463534 GeneID:4338600

Length

5758 bp

Definition

Oryza sativa Japonica Group Os05g0373400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:18002059..18007816

Sequence Coding Region

18002150..18002411,18003843..18003925,18004956..18005007,18005119..18005244,18005356..18005438
,18006192..18006374,18006796..18007132,18007221..18007364,18007440..18007570

Expression

GEO Profiles:Os05g0373400

Genome Context

<gbrowseImage1> name=NC_008398:18002059..18007816 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:18002059..18007816 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggaggacggcggcggcgacagggaccagcagaaccagcagcagcagcaggaggaggcggcggcaccggcagccgcggcggcgggggtggggggaggggaggagcaggggaacgggaggggggaggagagcgtgaagctgttcgtggggcaggtgccgaagcagatgacggaggacgagctcgccgccatgttcgccgccgtcgccgtcgtcgacgaggtcaccctcatccgcgacaaggccaccaaggcgtcccgaggctgctgctttttgatctgcccatcaagggaggaggctgacaaggcggtgaatgcatatcacaacaagcgcacccttccaggggcttcaagtccattgcaagtgaaatatgctgatggagagttggaaagactggagcacaaacttttcattggaatgcttccaaaaaatgtaacagatgctgaaatgactgatttattttcgcaatatgggaacatcaaggatttgcaaattttgagaggttcacaacagacaagcaaagccggctgtgcctttttgaagtatgaaacaaaagagcaagcgctggcagctatcgaagctctaaatgggaaacacaaaatagagggttcaagtgtacctttggttgttaaatgggctgacactgagaaggaaagacaagctcgaaaagcacaaaaggctcaatttcacccatctaatatgtcaaatccaaatgcaatgcaacagtcttcattatttggagctatgcagatgggatatgtaccacagtataatggttatggctaccagccacaaggaacctatggactaatgcagtaccctttatctcctatgcaaaatcaagctgccttcccgaatatggttcagtctgttaatcaaggaagctctattcgtggagtcaattctgaactttcacctaattctgctcctagatcgtttaactcaatgcagttaggcagtccttattcgcctgtgcctagtatgcagtatccgggatcatatcctggtaatgctatcaatagtcgtccttttgtgaattctcacaattcaatgaaagttccaaatgcgaatgctagttctcccacttcttcaagtactagcagcaaccccggtcctcagatagagggtcctcctggagccaatttatttatctaccacatccctcaagaatttggcgaccaagatcttgccggtgcctttcagggttttggtagagtactgagtgctaaagtttttgtagacaaagcaactggtcttagtaaatgcttcggttttataagctatgattctcctgcttctgcacagacagccattagtatgatgaacggataccaattaggtggtaaaaaactgaaagtacaactcaagagagacaacagcaagcacagtaaaacttattga</cdnaseq>

Protein Sequence

<aaseq>MAEDGGGDRDQQNQQQQQEEAAAPAAAAAGVGGGEEQGNGRGEE SVKLFVGQVPKQMTEDELAAMFAAVAVVDEVTLIRDKATKASRGCCFLICPSREEADK AVNAYHNKRTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVTDAEMTDLFSQYGNI KDLQILRGSQQTSKAGCAFLKYETKEQALAAIEALNGKHKIEGSSVPLVVKWADTEKE RQARKAQKAQFHPSNMSNPNAMQQSSLFGAMQMGYVPQYNGYGYQPQGTYGLMQYPLS PMQNQAAFPNMVQSVNQGSSIRGVNSELSPNSAPRSFNSMQLGSPYSPVPSMQYPGSY PGNAINSRPFVNSHNSMKVPNANASSPTSSSTSSNPGPQIEGPPGANLFIYHIPQEFG DQDLAGAFQGFGRVLSAKVFVDKATGLSKCFGFISYDSPASAQTAISMMNGYQLGGKK LKVQLKRDNSKHSKTY</aaseq>

Gene Sequence

<dnaseqindica>92..353#1785..1867#2898..2949#3061..3186#3298..3380#4134..4316#4738..5074#5163..5306#5382..5512#ggcgtcgccaccccaccccaccccaacccaagcccaaattcccacgcctcctcctcctcctcctcctcctccgccgcaaaccctaaccccaatggcggaggacggcggcggcgacagggaccagcagaaccagcagcagcagcaggaggaggcggcggcaccggcagccgcggcggcgggggtggggggaggggaggagcaggggaacgggaggggggaggagagcgtgaagctgttcgtggggcaggtgccgaagcagatgacggaggacgagctcgccgccatgttcgccgccgtcgccgtcgtcgacgaggtcaccctcatccgcgacaaggccaccaaggcgtcccgaggtccgagatccgtacgcgggaatttttttttccccttccccaccctccactcccagcgcaatgcggctctcctcttccggtctggtgctcgggatctgggcctccggcgcggcgaggggtcggaatcggggtcctcgccgtcgccgtcgccgtctcgcgggcgggctcccaccgagtttgacttgggggtgaaggaattcgagctcctcgcttttcctcccgtggggccacaaggtttcccgggtgttagttgcttctcgtggcgatttatgcggaatgtggtggggaatttcggctgttcatggccaatttcggtgtctgggtagcagctgaattggcggctgcatgtgtggtttttttttttgtgctgtttgctctagtctgattcatcgcgcggttaattgggttctgcatcttgtggtaattggttaggagctttgggttttggcttgaaatttcttgtttactggcgattgagctcgagttcgtgttgaattagtgggatttggtccaatgctggtgtaatacgttggatttgtgtgctcttgtggaacaaggcatagattttgagttatttggggtttgggatggtagtttctggtcctttggtttgttacaatgctttgaactgtggtgtttccccatgcatgtgttgattttgagatgcagaagtaagcatttggtgttcaatttctggaatttagatgctcttaggtgtaaacttgatctggttgacttcaattgaaaatggagtacagggctcagtgcagattcgttttagccattaactgaataaagatgtgcttttttccttttacgtgcatgatttggttagcattcaggaccagtcgaactgtacatgtgttctccgctgttttcttctgttttcttggatttaagagcttaatttgttctacaaaatgatttgccgttacatagtaatttgctccgataattttgtcctttcttttgctgtaaatgtcaatcacttgcctggttaggacagcacaatggtcaaatatgggacaataactgtttccagcctgttgtgggtcattgttcactagtcactagaccttgttttattgtgatgctgattcttttcagtgtcacatggaattggatcttcttccattttgttggtttaagccgattttcgttattgtcaggagtgatttcatttgttacaattccgtcttctttctttgccctctttcttcccaaaggactcaacatgcattatgcatatcgtaactaaacagcatttccctctatacaaattcctgatggcatttcctgccaaattagaaactgtatctttttccaggaagaaagtatctactaccttttctttccagatgacattcttaattcttgatcaacttgtccatcattttgaccttgatttaagatgcactggaccttttgcaggctgctgctttttgatctgcccatcaagggaggaggctgacaaggcggtgaatgcatatcacaacaagcgcacccttccaggggtatgtgaaaggatttcttttttgtgtctgtagttgttcaatgtggaaccttctaaatgtttaatatggtttctcgtggataaactgggagcgcatcatatttttggaagtatagatgttcagtgtgattaagtgaaacgttaggcctgctttagaacaaggatttttgtaggaaaaataaaggattgcaagccaaatgagaaaaaaaagtacgcttggtgtttggatcataggattgcaccaaaataatctcatagttcgcacgactgtaaatttctataaatttaggagggaaccaaacatggcacattctcatgtaaatttcctttcaagagctgacacagtctctctttctcctctctttagccaagaaacatctaataacaaaattcatgcatttttgccatgaaatccaaacacatattttctgctattcatgtagttttgtttacttctactctggttctggtcactgacgggagaagataaagatcgtatctcacccctggcactctcatatgaatgaatattatttgttgtttgtgactaccaagcatgtgttttctagagctggttaatgatgtttgagcatgtacttattttagtgtctatttatttctgattggtatttgtggattcatcacaagccaaaacatggttagaactctaatatgccatgagcgctaggagtttctgaatttgatgttatgatacacatacatctctggattaattaaaaccacacacgccctaccttacccgagagtgagcgctcattcttctgatgatggataaaattcggattgtttcaattctgttatctggtagcggcagttcaacgatcataaattttagtgatctctgagtattattacatttttttttatttttcatggcagttatttaagttccgtagcctaccaaacttgcttgggagtaaagcctgttgttgtgatttcagttctgtaaaaccgacattacttctattgcgacctccttgacagcaattcctttttttctctgaaaccaggcttcaagtccattgcaagtgaaatatgctgatggagagttggaaagactgggtatgaggctctctaaaattatttcttccataattcatttgtatatcctcagaataattgttaaattttgctaatgtatctatgttttcatgttgacgctgttgcttccagagcacaaacttttcattggaatgcttccaaaaaatgtaacagatgctgaaatgactgatttattttcgcaatatgggaacatcaaggatttgcaaattttgagaggttcacaacagacaagcaaaggtcaaaatctctttaccttttccccctcttgattcagatggaaaacacttgtcatatagaaccctaaactttctcagaacctttagcttattccaactatggatcttgcagccggctgtgcctttttgaagtatgaaacaaaagagcaagcgctggcagctatcgaagctctaaatgggaaacacaaaatagaggtttgtggaaattgaaggatgatacaatattttttttgctgatttgtgtttatagatctctcctgcaaacgatagcaacttaggcatctattgtactagctcagtctcaaagccaagaatagtactgtatcctgattcaaatactgttccaacatagctgaacaaaataatttcattcactgtctcattctgtgattgtaacaagtaatagctacatgactgtagcatgaaacagtccatccagatcaaattaacaatagatgagtgcagatataagttaagctcaaatgtgatggatttgtttgttgcacactcacacttgaatatgtataagcaacaacagtggtagacacagtatacaattttagcctcgcaaaactggacgcagtaatatgttgtaaataggtcaatccatgtgcatattgtcaccgtcacagcttttaaagcaattctggtccaatgactgttcctaaaaggcaatctgtaatatccaaaaatttttttttagtgttccaataatatcttagaatatttacagaatcaaaagctccaaactacataacaaaacccttgagaattttcaaatttaaattcaatggaaattagtagtagcatatgtatacagaaagatagtatgtttaatatataaatgtagccagctccttaagttgtattaatatattagctgtttcctttatgtttgaattttcacagttgattacatagatcttgatgtgccctgatcttttgtagggttcaagtgtacctttggttgttaaatgggctgacactgagaaggaaagacaagctcgaaaagcacaaaaggctcaatttcacccatctaatatgtcaaatccaaatgcaatgcaacagtcttcattatttggagctatgcagatgggatatgtaccacagtataatggttatggctaccaggtaaattatgacttaaaaagtcttgagattttagaacatcacacaaccacataattattcctagaatacaagtaatcctattcctaacttgcttttcagtcttctaaaaaaccaaaaatcattgccaagcgcatggtctctgaaaacctatagctgttcgtctgtcgttcctcatgttgtcctctggctgtatctttgcttattattgaacagttattattgcaaatagctaaacagttaacttcactattatgcttaacattaaagtgcattcttttaaactgctacagtttgcaccttccttagaactaggttgaaacacagtgtggtttgctagacaacttagctttgtatactctgcacctgagtatgatctggcttgaattgtgggatgtaactatatttctgttgatctgtgcagccacaaggaacctatggactaatgcagtaccctttatctcctatgcaaaatcaagctgccttcccgaatatggttcagtctgttaatcaaggaagctctattcgtggagtcaattctgaactttcacctaattctgctcctagatcgtttaactcaatgcagttaggcagtccttattcgcctgtgcctagtatgcagtatccgggatcatatcctggtaatgctatcaatagtcgtccttttgtgaattctcacaattcaatgaaagttccaaatgcgaatgctagttctcccacttcttcaagtactagcagcaaccccggtcctcagatagagggtttgtctctattacactcctgaaaattagtttattacctgttagatctcaaattcattttatagatgattttttttcatgtgtacaggtcctcctggagccaatttatttatctaccacatccctcaagaatttggcgaccaagatcttgccggtgcctttcagggttttggtagagtactgagtgctaaagtttttgtagacaaagcaactggtcttagtaaatgcttcggtaattaacttgtcctaactgctaaccattgattgtattatcatgctttgttaactggttcctgattgggtgcaggttttataagctatgattctcctgcttctgcacagacagccattagtatgatgaacggataccaattaggtggtaaaaaactgaaagtacaactcaagagagacaacagcaagcacagtaaaacttattgacagcgaccttttgtatgcccacacgatcaggaaaattggtacatatgtgtcacacaaattgatcgttacagttgttacctctggcctccaccatgtgttgtaaggtggcggcttgtgtatctttgttcaattcacattcttgaaaatttgttacattgtgtaatttgttgcagcatagttgtagaatctgtaccatcagatccattgtacatcatcagatattaattcattcaattgtttctttct</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0373400, RefSeq:Os05g0373400