Os05g0386900

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Revision as of 10:19, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0386900| Description = Reticulon family protein| Version = NM_001061956.1 GI:115463642 GeneID:4338659| Length = 6100 bp| Definition = Oryz...")
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Gene Name

Os05g0386900

Description

Reticulon family protein

Version

NM_001061956.1 GI:115463642 GeneID:4338659

Length

6100 bp

Definition

Oryza sativa Japonica Group Os05g0386900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:18735629..18741728

Sequence Coding Region

18735680..18736150,18736246..18736407,18736482..18736697,18737938..18738147

Expression

GEO Profiles:Os05g0386900

Genome Context

<gbrowseImage1> name=NC_008398:18735629..18741728 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:18735629..18741728 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcgctccaccagcggccgcaccagaagccgccggcgaccgactccctccccgcctccgccgccgccgccgccgccgcgccttctcgcccgctcccactcctcaccctcccttacctcttctccctcctcgcgctcctcctcctcctcgccctcctcttcccctggggccctcccagccactcctctgcccccgcctcgccgtggcgggggtacacgctccaggaggccgccgccttcgccgctcgcgcgggaaacggcaccatcgtcctcgccgccgtctccgggccctacctccccttcctctccaactggctcatcaccgtccgccgcgccggccgcgccgaccaggtgctcgtcgtcgccgaggactatgacacgctcgagcggatcaatgcggcgtggccgggacacgccgtcctcgtgccccccgcgcccgacgcccaggtcgcccacaagttcggatcccaggggttctttaacttcacctcgcggcggccgcggcacttgctgcagattcttgagctagggtacagtgtcatgtacaacgatgtcgacatggtgtggctcgccgacccattcccgtatatcgtcggggatcatgacgtgtacttcatggatgatatgactcctgtgaagccattggatcattcacatgagctgccaccacctggtaagaaggggcggacttacatctgcagctgcatgatattcctgcggccaacggaaggggctaagctgctattgaggaagtggattgaggagctcaaggagcagccctggtcaaagaagcagaaagcaaatgatcagccagcattcaactgggctttgaacaagactgcaggacaggtagatgtgtatctgctgcctcagtctgcatttccaactggaggtttatattttaagaataaaacatgggtaaaggaaacaaagggcaagcatgtcatcatacacaataactatatcacaggatttgagaagaagataaaacggtttcgtgatcatgggctatggcttgtcgatgaacatagtgatgagtcaccacttggtagaatatga</cdnaseq>

Protein Sequence

<aaseq>MSLHQRPHQKPPATDSLPASAAAAAAAPSRPLPLLTLPYLFSLL ALLLLLALLFPWGPPSHSSAPASPWRGYTLQEAAAFAARAGNGTIVLAAVSGPYLPFL SNWLITVRRAGRADQVLVVAEDYDTLERINAAWPGHAVLVPPAPDAQVAHKFGSQGFF NFTSRRPRHLLQILELGYSVMYNDVDMVWLADPFPYIVGDHDVYFMDDMTPVKPLDHS HELPPPGKKGRTYICSCMIFLRPTEGAKLLLRKWIEELKEQPWSKKQKANDQPAFNWA LNKTAGQVDVYLLPQSAFPTGGLYFKNKTWVKETKGKHVIIHNNYITGFEKKIKRFRD HGLWLVDEHSDESPLGRI</aaseq>

Gene Sequence

<dnaseqindica>52..522#618..779#854..1069#2310..2519#actctttctcacgcttcactctccttcctcccaccatcccgatctccggcgatgtcgctccaccagcggccgcaccagaagccgccggcgaccgactccctccccgcctccgccgccgccgccgccgccgcgccttctcgcccgctcccactcctcaccctcccttacctcttctccctcctcgcgctcctcctcctcctcgccctcctcttcccctggggccctcccagccactcctctgcccccgcctcgccgtggcgggggtacacgctccaggaggccgccgccttcgccgctcgcgcgggaaacggcaccatcgtcctcgccgccgtctccgggccctacctccccttcctctccaactggctcatcaccgtccgccgcgccggccgcgccgaccaggtgctcgtcgtcgccgaggactatgacacgctcgagcggatcaatgcggcgtggccgggacacgccgtcctcgtgccccccgcgcccgacgcccaggtcgcccacaagttcggatcccaggtgagaggactggtttccggggggtgcgcgccccccagatgctcgatgaaatgccagcgcgagtgactcttgcctttctgcttgtgattgtgcaggggttctttaacttcacctcgcggcggccgcggcacttgctgcagattcttgagctagggtacagtgtcatgtacaacgatgtcgacatggtgtggctcgccgacccattcccgtatatcgtcggggatcatgacgtgtacttcatggatgatatgactcctgtacgtgcaattgttgtgtttgtcattggaactgcctagaggagaacttattggggttgagtttgtggatgcaggtgaagccattggatcattcacatgagctgccaccacctggtaagaaggggcggacttacatctgcagctgcatgatattcctgcggccaacggaaggggctaagctgctattgaggaagtggattgaggagctcaaggagcagccctggtcaaagaagcagaaagcaaatgatcagccagcattcaactgggctttgaacaagactgcaggacaggtttgttccactagattttatttcttataatgcaacattgcatccagacaggacacagcttgctcaagtatttcttgtggttacatgtattgacttcatgctttggagcatttggttgaattgcatctgcatatactaggataattttgggaacaattagccagttgaaccaactattagtttgctttagtgcggacaacagagctaagtattattttgacatagtaattcaaaagtacgcatagtaatattatttgcaactggaaggtgtggggttgggtttttactattgcctgcattacattgttgttggtgctactcagtgctgggttggttagggttgattactaaaccagttggagttgattttagcatgagtactgcttctataccagattcagtcagggtggtgactggtgtacacttaattgatcaatggataggcctggttcaagtgcaaactggcttgcattgtttttaagtggaagaatgaagagacactaaatcatcatttttgtactaaataaaaggcttgtcaaatctgttctttaaaccgaacaacaaaatctctgccaatattggccatcagcactcagtttttcgaatttgaaagttgagtacatattatctctgaagataatcccttttttttcttaactatcacgaggagtttcctgtggtcaatttgggatcagtgagctctgctatctccttgtgagtcccttaatctttttagtacatcttgtagtaaagataatcctttttcttaaaatttatgatctccctgtaaccggtcgaacatgctgcccattctagcttctagatatctctattactctaaaaggggagtttcattcctctgctcacccatcccattgcgagaccgttcacgccatctcctctccgaaaaagcaaacaaacaaacaaaaaagttccacccaaaaacctgtgaaagaccaacccatcgataaaaaccggatagaaaaaagtaaaccatccaaaaaaccgaaccactgtatgggggttgaactgtgagcacatccttcccctagatcctgttgtaacgcatgtgcatgttactagttgtatttaatatcccttctactttgctttttgttctatattttggtagtatcttgtcaattttacattttattctgctttgttgtaatacagtatgttcctggatctttgcccccaaacagtctttggaaactattaatgtaagatatacatgcaggtagatgtgtatctgctgcctcagtctgcatttccaactggaggtttatattttaagaataaaacatgggtaaaggaaacaaagggcaagcatgtcatcatacacaataactatatcacaggatttgagaagaagataaaacggtttcgtgatcatgggctatggcttgtcgatgaacatagtgatgagtcaccacttggtagaatatgagcaagctggcaaagctacaccacatctgtccttgcaacagcatcaaacttttgcagctggtgtttaactggttgggattgcggaaccgtgggattgatttgccatccgccacacaaaaatacagcaactggatatgtgcagtagtttttaattgtacatcaagcccctttcagagcgacctgttgtcatgatgattatttttatttcattatcttttacgaatacggcagcagtaagatcttagggtgagaatgtagctatttaagggaatgtggccacaaatattagcgagtcaagtagtaactcattggtctatatgtatagcatggtaattttgttaacctgtaggcattttttttgacactggattgtgtttaatattattctttttacctcctttcataaagaactctaactgtcatgtgtgatggcctgctgggtgtccacaaaactgtgctaatgatgacttgtaagttgtaattccgtatataattatttaacatgctcaggtaatcccttgcttttctttaccatcgcaatgcaacacatgagatgagtagacctttcttagtatgcattaaatatggcatgcctctctgaaacatacaggacacacaggactatgatgaagtggcacaagataagatggctacatataagagggatcaggattcacggctgtatcatgtgaattttggagcataaagcttcagttcgaggctttgggccttgtgaccttctcgtctctccatgtctattatttttcttcacacaaacctgcggagcttgatgcgtcaggatcgaatcgcctgttttggctcattccattccagccaaaacgcttgcgattggagtaagaatccaagaaccagtgtggctgctgccattggaccctttccttctctggtgcctcccaactttgcttccagcagcggtaatgccgttgcctttgccacacacaacgaacaccggcgcgcacacatgtatatatgcttctgcccatgctcggatctgcacagaaaacaccatatttcttccttgtgatcacgagctaaccttgcatctctcattgtctttggcaaggatcgatgggccaggctgctgccaaggcgaagcaaggtactatgaacacaaagatccatttatttatttattttattttttgcatggaaagatccatataattgcttaggattattaatttcctactgttattttgtcaaccgataggtagatttaacagtttggtgtataattttgatttaacagtttggtgtataattttgcttagtgatttgcatgtgtatgtaagaattcagatgataggtgtataggaggattgatccttaattttttgttgataggtggcgatcaggcagagaacaagactggcaaggacgagaaggttgcgaaacctaaggatgccaaggatctcaccgacttcatggaaaaaaactacgactcgatcaaggacgtgacaagcttcgaagatttctaccatgccttctacgagctcatcgagtaagttttgatctgatccagtcttggccaagctcagagtccagcttaatttctcattttcagttttgctacacatggttggttaggtagtctagttgaaccattggaggaatgatggaattctcacttcatgcctaagcatttttgttaattctaaaaactggaacaagaaaagttagaacagtaggatcgtattcatttttttaaaagataaaagagcaggattatattcatagaagacaatggcgccatattaagcagtaggatatgatataaaacatcgatacatgcaatgacattgttacctaaccatttgtttctgttactttgccttcctcttcagaaaattctgtgaggaacgtgggcaattgcagtacaggataccggaaaaagcggaacttcagaagcagtacgaggttagagacaactctgacttgtttaatttgcttacttcagtgtacaactcttcgacagaagcttcacctttcctccgagaattgttgcaaatggtttagacaccataattgaaggcattggcagccaaaacttaagtatgccatgggttgtaagcatgccattctttggtagtcctcagcctcagccccatatatatgttagtatacacttaatttcttatcaaattttaattcatttatggacaataaattgttgtccatgcttttgtatggcattctacgcttttttgataaagtgaggtgtggtgaagttagccaccaactaaacatgtcctaactgtatacatgtattcataatatgccgttcaatcaatatattgcataagttatttctaggggttatctatttgtcaaatgcctgttttttttcttatctaccgataggagaatatatttctttagacagaaactttcttcaaaatctttcaaatatatttacagtataattaaaatataattacattgtaacttatatataattatttgtatgtaactagcatctaaatttcaaaaaacatgtagtagtgcagtggtagtgcacggatttttggaatctagcatgaaccttaaggcaaatcaaacagcctattaaattcgacagatttttttgaaaaaagaaccgtctatcgattacttttttataactagatcactaatttacaacttacatgccgatttttctttactcaggtgaaaaaaatcagcttgctactccctccgttcatattatgagtcgttcgactttttccttagtcaaaattctttaagtttgatataatttgtaaatatagtaacatttttaatataaaacaaatatattatcaaaatatattcaatgttaaatttaatcaaactaatttagtgttgtagatgttgttattttttttctataaactcgatcaaacaaaaataaatttactaagaaaaaaaatcaaacaacttataatatgaaacggataaagtatattatattatttcttcaacaagattaataaaggagctcatgtaatttaactaagtttggtggtagcgcagagggtgaacaagagcccccagaaggggcagaacctgagcaggaagcagttcatggagctggccgggcaggtgatcaaggtgaacagcttcaccttcggcaaggccaccatggacgtgctggtcgtcctcttcggcgcccccgtctgcgccctcctcgccaagagggtcgtcccgggcctcaagtccttctccgacgacgtcgtcatccccgtcgccacctccggcgccgtcgtctacctcgccaagaccaacaagctgtgatcgaggtgaatcgatcgttccagaatcatatccagactatggctaacaaattatcgcgagaataaaggtgagggagaaaaaacgtacgtggtgtcatgtcgtataaagtttgcgttgtggccttggttaaatttcgcccaaattgtaaagattatttgagagtggatttttatattcactctcttttatatgtcttcactgttcacacctgtgaaatctaggagaaatctgtataataatattcgtaaaatctgatatgtgcacatgcacgaatcctagttcgtcccc</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0386900, RefSeq:Os05g0386900