Os05g0389000

From RiceWiki
Revision as of 10:19, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0389000| Description = Similar to AP2-1 protein (Fragment)| Version = NM_001061966.1 GI:115463662 GeneID:4338669| Length = 4096 bp| Defini...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os05g0389000

Description

Similar to AP2-1 protein (Fragment)

Version

NM_001061966.1 GI:115463662 GeneID:4338669

Length

4096 bp

Definition

Oryza sativa Japonica Group Os05g0389000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:18820402..18824497

Sequence Coding Region

18820403..18820492,18821143..18821216,18821292..18821342,18822544..18822611,18822724..18823292
,18823391..18823441

Expression

GEO Profiles:Os05g0389000

Genome Context

<gbrowseImage1> name=NC_008398:18820402..18824497 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:18820402..18824497 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ggtgcatatgatgatgaagaggctgcagcaagagcttatgaccttgctgcattgaaatactggggagctgggacacaaataaactttcctgtctctgattatgcaagagatcttgaggaaatgcagatgatctccaaggaggattatcttgtgtctcttcggagaaagagcagtgccttttccaggggtttaccaaaatatcgcggccttcctaggcagctccataattccagatgggatgcttctttgggacacttgcttggcaatgactacatgagcctagggaaggacatcacgctggatgggaaatttgcaggaacctttggcttagagaggaaaattgatctgacaaattacataaggtggtggctcccaaaaaagacacggcagtcagatacatctaaaatggaagaggttactgatgaaatccgtgctattgaaagttcaatgcaacggactgagccttataagtttccttcccttggcctccattctaactcaaagccctcttccgtggtcctatcagcatgtgatatcttatctcagtctgatgccttcaaaagcttctcagaaaaatctacaaaactatctgaagaatgtacttttagcaaagaaatggatgaaggaaagacagttaccccagtacctgcaactggacatgacacaactgcagttaacatgaacgtgaatgggttgcttgtgcaaagagctccatacacattgccctctgttactgcacaaatgaaaaatacctggaaccctgctgatccttctgcggaccctcttttctggaccaacttcatcctgccagcaagtcaacctgtcacgatggcaacaatagcaacaacaacgtttgcaaagaatgaggtgagttcaagtgatccattccatggtcaagagtga</cdnaseq>

Protein Sequence

<aaseq>GAYDDEEAAARAYDLAALKYWGAGTQINFPVSDYARDLEEMQMI SKEDYLVSLRRKSSAFSRGLPKYRGLPRQLHNSRWDASLGHLLGNDYMSLGKDITLDG KFAGTFGLERKIDLTNYIRWWLPKKTRQSDTSKMEEVTDEIRAIESSMQRTEPYKFPS LGLHSNSKPSSVVLSACDILSQSDAFKSFSEKSTKLSEECTFSKEMDEGKTVTPVPAT GHDTTAVNMNVNGLLVQRAPYTLPSVTAQMKNTWNPADPSADPLFWTNFILPASQPVT MATIATTTFAKNEVSSSDPFHGQE</aaseq>

Gene Sequence

<dnaseqindica>2..91#742..815#891..941#2143..2210#2323..2891#2990..3040#aggtgcatatgatgatgaagaggctgcagcaagagcttatgaccttgctgcattgaaatactggggagctgggacacaaataaactttcctgtgagtcatctatacttgctaattataattggtttcttagcttccatttagttcttctacaattattaaccacacactgccttttcttcaagaccttcatttggttaaatttaatcatttatattttgcatcacctgagctcaatttcgaagactgattctcttaagatgcaaattgaaaaccaaaagatatcttagagagtgttgtaccaaactttggatcatactagtccaaacatatcctatgcaactattgtgtgatgtttgaaaaatctgaatactcttgactattatattatgttcttttgtatgcaaaggttagggatttattcagtttacacttgacgattcggagatggatgtttgtgtccttgacaaaaaaaatctcttgttttcagaaaattcatctctgagcatataagcgacattgaaaaatcattgtctcagaagaatattggcaaaacaaacatatgcatacatgccatctcttcagtttggtatctatatgcctatacatctcgatggaaaataattgcgatgttgcttatgaattattgtactatgttttttccattctatattttgcactagttaatttgatttgtggtaatctttttcaggcttatgttcattatgtatttgcttatttaggtctctgattatgcaagagatcttgaggaaatgcagatgatctccaaggaggattatcttgtgtctcttcggaggtatatttgtgaatttataatacgtgcatattactttgtttcttaagtactaactgtaagacacatgcactgcagaaagagcagtgccttttccaggggtttaccaaaatatcgcggccttcctaggtacttattagcaatgagaaatatatttggaagttaactctatgttcagttattatatttgcatgcatgtttgtgatgctaattcagtaacaagtctcatgtccaattttcttttctattgtgcacaaactatcattgtccatgttttgtttatttcggtaacattttccatcttgctacaaatatttatggcaaaccaagtagtagtatgtaaagatgatgccctgtggtatattacattagaaattattttcagcaacttcatgtatttctgctatgaattaaattagtaagctcagcagatttttggaggtagatagcttagatactaaactactagctcttattcgtgtgtcattggtcttcatttagagaattttaaaataaagtgtcatttagcaaagatgcaaaccttcaagttttgctgaacattaattctttccaataatcactcgattgcacagccacagtccctcaactgtacttgtgatgctgaatgtgcgtcatcgaaattctgtgtttcctcactgattactgttgtcaatggaaattcggcattcagtgccttcgttctttgtatggttacagctatcctgctttctgtgggatctcaaccaaccaaaacataatattctcaacagaatatcctttcagaggagagtgattacttgtagctgagattttgaagagatcgacatacttgaaatttccttctaggataggatcccgacttaatagtgtcctgaggaccactagaaattagtttaggaaagtttattatttggacatataaagtaaaactatactccctccatactcataaaggaagtcgtttaggacaatgtttaagtcaaaccttgggaatataaatcattaataactcttaagttgttgagtttgacaatgcaaaaattatatgaatatatttgccttgaaaaatactttcataaaagtatacatatatcacttttcaataaatatttttatagaaacaagaagtcaaagttgtgttttgaagaccatctcgctgtcctaaacgacttcctttacgagtacggagggtgtacgtaattctgttttacttaattattcaccagatgtcagtcttcgactaatcattacagtgcactacactgctggacacgtacagtcacattgatataaattttataactgcaactgttgtgacattatcatgcaggcagctccataattccagatgggatgcttctttgggacacttgcttggcaatgactacatgagcctaggttgtggtgtctccataaaaacttctacactgctgtttctggttaacaaactacagaggagaaagacaaattctatgtggttttgtaaccagtctttctatttaaattacagggaaggacatcacgctggatgggaaatttgcaggaacctttggcttagagaggaaaattgatctgacaaattacataaggtggtggctcccaaaaaagacacggcagtcagatacatctaaaatggaagaggttactgatgaaatccgtgctattgaaagttcaatgcaacggactgagccttataagtttccttcccttggcctccattctaactcaaagccctcttccgtggtcctatcagcatgtgatatcttatctcagtctgatgccttcaaaagcttctcagaaaaatctacaaaactatctgaagaatgtacttttagcaaagaaatggatgaaggaaagacagttaccccagtacctgcaactggacatgacacaactgcagttaacatgaacgtgaatgggttgcttgtgcaaagagctccatacacattgccctctgttactgcacaaatgaaaaatacctggaaccctgctgatccttctgcggaccctcttttctggaccaacttcatcctgccagcaagtcaacctgtcacgatggcaacaatagcaacaacaacggtttgttcctctttggctctacttgacaatttgaattaaatctgtaacatattttcaatttttcttcttgtgcttaatttgatgctgatttgtgacagtttgcaaagaatgaggtgagttcaagtgatccattccatggtcaagagtgaccgtacgagcttaccaaagtgcatgcaggatttgctttttggcttggtaagtagagactgtaggcatagtaaattttacattttttcatatattttctttctgtgtatcgcctaaattatctgcttgaagaactcaatgcatcacgagatgtccagatttgcattcaaataagaacatgcaagcaatggaaatatgtttatgtctaacttacaaatatctaaggatttattttcccttgattgacaggtgccagtcttgaaaagaaaagaatatacctgacaatatgacactccgttgaaagaacacaatgaaaatgaactgagacagtttaaatctaatcaattaaaccaaacaaaaatactgttgtgagatatttatgtgtgcataaatatttttataatgatgaaaatatgggattatgttgtgtaagtggtgcatcgagtatttgagacatgataaatcaacattgtttatgtgcgtgtgcccacgcgtggacagtgctttcagctttccctccgttaaaatatcagtaacactgacatgtgggtgtcaaattcttaatttactatagctacccaggaagatccactttgcatatgctttgcactcgcagtcacagtgattttactggcacatccttttgtaaaattgttagttttattccttttgaacgaactaattgttaattttatgaaaaacagcacggtagttataggacatgtttgcattcctcttttctgcttaactgaaaccttttgcatatttcaggtgggtgataacatcctgcacgtctatgggtttccttcttcctagcttttgaggtgacccgtgaacaaataccctttgtatccatagttcataagccatgaatagaaggtaagagaagtacaaccatagttatgtaatatatacagtgcctagtggcctagtgccccgttaatgatatttagttatagagctgtctgtacatatcgcggttcttatttcagctacttggttggttctatagaatgaagagaacagaagaacacgaatttttcaaagcttaattgttt</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0389000, RefSeq:Os05g0389000