Os05g0393800

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Revision as of 10:20, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0393800| Description = Protein of unknown function DUF221 domain containing protein| Version = NM_001061992.1 GI:115463714 GeneID:4338696| ...")
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Gene Name

Os05g0393800

Description

Protein of unknown function DUF221 domain containing protein

Version

NM_001061992.1 GI:115463714 GeneID:4338696

Length

5962 bp

Definition

Oryza sativa Japonica Group Os05g0393800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:19166953..19172914

Sequence Coding Region

19167605..19167918,19168078..19168227,19169004..19169139,19169280..19169381,19169614..19169733
,19169858..19169938,19170099..19170439,19171354..19171599,19171759..19172083
,19172225..19172458,19172564..19172818

Expression

GEO Profiles:Os05g0393800

Genome Context

<gbrowseImage1> name=NC_008398:19166953..19172914 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:19166953..19172914 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggttctctcacagatatcggcgtcgccgcaggaataaacatactgtccgcattgggttttcttctcgcatttgcggttctcaggatacagcctatcaacgacagggtctactttcccaaatggtacctcaaagggacaagaagcagcccaagaagcatgggaacggttttctcaaagtttgtcaatgctgatctctcgacgtatatccgcttcctgaattggatgcctgcagcgctgcaaatgcctgagcccgagttgattgagcacgcaggcctcgactccgcggtatatgtccgcatatatcttcttgggttaaaaatatttgtgccgattgctgtgctggcattcattgtccttgttcctatcaactgggctagtggaactttggagaaggaaaagagtctaagttatgatcaaattgacaagctttcaatatctaaccttggaaaaggatcgaaaagattttgggcacacatagtgatggcctatgtatttacgttttggacgtttttcgtgttgtatcgtgaatacaaggttgtaacaactatgagattgcgctttcttgctattcagaatcgtcgagctgatcagtttacggtcctggtgagaaatgtaccacctgacccagatgaaacagttagtgagcatgttgagcacttctttgctgtcaatcatcgtgatcattatctcagtcaccagaccgtatacaatgcaaacacccttgccggtttggttgagcagaagaaaggcttgcaaaactggctggtctactacgaaaaccagcatgctaaaaaccctgcaaaaaaaccaactatgaagacaggattgtggggcctttgggggaaaagagtggatgctatagaacactacaccactgccattgaggagttatgcaaacaggaagatgaggagagacacaaggtgatcactgatcctaatgctattatgccagctgcatttgtatctttcaaaagccggtggggagctgctgtttgcgctcaaacgcaacagacgagcaatccaacgttgtggcttaccgagtgggccccagaacctcgggatgttttctggcctaatctcgcgatccctttcgtcgagctctcagtccggaggcttatcatggccgttgcactcttctttctgacctttttcttcatgattccaattgcaattgtccaatcaatggcaaacttggatgacattgaacggatgcttcctttcctgaaacctataatagaaagaaattcactgaagtcaattgtgcaaggtttcttgccaggaatcgcattgaaaatcttccttatacttctcccaacatttcttgtgatgatgagcaaaattgaaggtcatacatcactatctggattggacaggaggactgcgtcgaagtattatttgttcctatttgtcaatgtgttcttggggagtgtaataactggaacagcgttccaacaactcaacaattttatccatcagtcagctaataaaattccagagattgtcggagaatccatccccatgaaagcaacatttttcatcacatatgtaatggttgatggctgggctggtgttgccgctgaggttcttaggttgaagccattggtcatgttccatataaagaatactttcttggtcagaaccgagcgagatcgagagcaggccatggaccctgggagcctggattttggcaccacagaaccaaggatacaactgtactttctgcttgggcttgtatatgctgtcgtgacaccaattcttctacctttcatcatagtgttctttagccttgcctatctagtattcagacaccagatcattaatgtctacaatcagcaatatgagagtggcgcgcaattctggccagatgtccaaagacgactggttatagcattgatagtatcacaaatcctcctgttgggactgctgagcacgcaggaagcagagaaatccactgttgctcttcttcctcttcctgtactgtccatatggttccactatgtttgcaagggccgctttgagccagcgtttataaagttccccctgcaggatgcaatggtaaaggatacactggaacgggcaaatgacccaaccctgaatttgagagagtacctgaaggatgcatatgtgcacccagtgttccaaaaaaatgacatatatgagtttgctggcatcgacgaggaagagaagaaccccatggttgcaacgaagcgccaatcgcgaatgaacacaccagtagatagcaagttcaattccagttctggcactaatgaaggagagttcagtcggatggctcctacctga</cdnaseq>

Protein Sequence

<aaseq>MGSLTDIGVAAGINILSALGFLLAFAVLRIQPINDRVYFPKWYL KGTRSSPRSMGTVFSKFVNADLSTYIRFLNWMPAALQMPEPELIEHAGLDSAVYVRIY LLGLKIFVPIAVLAFIVLVPINWASGTLEKEKSLSYDQIDKLSISNLGKGSKRFWAHI VMAYVFTFWTFFVLYREYKVVTTMRLRFLAIQNRRADQFTVLVRNVPPDPDETVSEHV EHFFAVNHRDHYLSHQTVYNANTLAGLVEQKKGLQNWLVYYENQHAKNPAKKPTMKTG LWGLWGKRVDAIEHYTTAIEELCKQEDEERHKVITDPNAIMPAAFVSFKSRWGAAVCA QTQQTSNPTLWLTEWAPEPRDVFWPNLAIPFVELSVRRLIMAVALFFLTFFFMIPIAI VQSMANLDDIERMLPFLKPIIERNSLKSIVQGFLPGIALKIFLILLPTFLVMMSKIEG HTSLSGLDRRTASKYYLFLFVNVFLGSVITGTAFQQLNNFIHQSANKIPEIVGESIPM KATFFITYVMVDGWAGVAAEVLRLKPLVMFHIKNTFLVRTERDREQAMDPGSLDFGTT EPRIQLYFLLGLVYAVVTPILLPFIIVFFSLAYLVFRHQIINVYNQQYESGAQFWPDV QRRLVIALIVSQILLLGLLSTQEAEKSTVALLPLPVLSIWFHYVCKGRFEPAFIKFPL QDAMVKDTLERANDPTLNLREYLKDAYVHPVFQKNDIYEFAGIDEEEKNPMVATKRQS RMNTPVDSKFNSSSGTNEGEFSRMAPT</aaseq>

Gene Sequence

<dnaseqindica>653..966#1126..1275#2052..2187#2328..2429#2662..2781#2906..2986#3147..3487#4402..4647#4807..5131#5273..5506#5612..5866#accgggctggtcgatctgcctcgttggcggccggccgccggccgatcgtgatctgacaggacagccatttgcacgcgtctctccctcgttttactaccatccacaggaggcccgaagtcacccgcgtctcggccctctccgtcctcgttgcttccgacgccggaggccgagagacaggcgacgcgcacgtctgtctgcgccgttgccgcagatcagcctgacgaggtaatcgtgcgcgtgcgcctgcgcctcgatcgatcgaccattcctgccctactcctcgatttgttcgcagtcgaattggattgcgatgtgctctcttcctcctcggttttcatcgatcgcttccttctttttgggcgcgttacttcttgaataaatccttttcattttctcaaactgtcaaacaccttgaacaatatttgccgttatctcgattcaccattcatacccttcttactttgtgatgatcatcacctaggtttattcgacttcaccaatagtctgtcacgtttattgtgttacaactgagaattaacaaattctttctgaccatttttccaattcattgcagataccagctctaccaacaactcccgttacttctctgtatgatgcctgttctgaactgagtcttcatagatagagagaaatgggttctctcacagatatcggcgtcgccgcaggaataaacatactgtccgcattgggttttcttctcgcatttgcggttctcaggatacagcctatcaacgacagggtctactttcccaaatggtacctcaaagggacaagaagcagcccaagaagcatgggaacggttttctcaaagtttgtcaatgctgatctctcgacgtatatccgcttcctgaattggatgcctgcagcgctgcaaatgcctgagcccgagttgattgagcacgcaggcctcgactccgcggtatatgtccgcatatatcttcttgggtgagcatgctgttcgtgtttcgcaattggtctttttttttgtctttaaagtttccgaaaaggttgaattcaactgataaatgtgactatatgatttggattggatgtcagaacatattcggtgtattatgcttactgcatagttctcttgctatgcaggttaaaaatatttgtgccgattgctgtgctggcattcattgtccttgttcctatcaactgggctagtggaactttggagaaggaaaagagtctaagttatgatcaaattgacaagctttcaatatctaaccttggaaaaggatcgaaaaggtataattctctgtgcttcatgtgtgtgtcctaatgcttgccgcaccaccatggatcgtgcctttgtttctttgaataattacctgtgtcgcgtataatgttaccgctagtctttacttctcattcacggtataatgcataccatcatatccttcgaacaagataatgacattgaaggtttcctttcctatctgtactttgaaaaattggcggtcagacattttggaattttgtgaatatgtttgaagtttttcaatatcggtgcactattagatactttcaataaatttagtacaaaaatatttatgcagtgataacctatgcttaacctaaaattgtaacaattaatggagactggtgtgactaataatccaaactggacctcttcgaaattgatgcatgttctaactttttcacataaatctgctctattaatacagaagtggcaaaccttctgccctttcttcaaaaagaaaaaaaagcttttcacataaatgaatgcaaaggctttgcctccaaataatttcccaattatcgatgattattctagcatttagtcatcatcacttttatcaaatcagtttttatgatgctctagcactagaatttgatcaggctcttgcggtatttttctaaccaacacaaatgcctactaattagttttttttcgttgtcaatttcactagtgagagtttagccgaatttatatcttgtgttcgatatcctgataggctgataatttctctaatgaatttatgttttttccctgtcaatagattttgggcacacatagtgatggcctatgtatttacgttttggacgtttttcgtgttgtatcgtgaatacaaggttgtaacaactatgagattgcgctttcttgctattcagaatcgtcgagctgatcagtttacggtgagagatctttcccgtaacactcagatcaacgaatttaaacttctttactagattatttcaactttgcaacttattatatagttatgcttctttttttttttgaatttacggcggtgaaaattttcttatttatctaggtcctggtgagaaatgtaccacctgacccagatgaaacagttagtgagcatgttgagcacttctttgctgtcaatcatcgtgatcattatctcagtcaccaggtaataaattttgctatcttcaatccgctgtggacttcagcattgctttttgtggaaaaactagataattaagttgtaaggaaatccaaataagaaacgactcattgtatttccttttgttctgttctcctgaattaccgacagttctttactcttagcacataacaaatagtccagctcaaatgtgtgctcctcatttggagtaatttcttttttatcatatgaccaacagaccgtatacaatgcaaacacccttgccggtttggttgagcagaagaaaggcttgcaaaactggctggtctactacgaaaaccagcatgctaaaaaccctgcaaaaaaaccaactatgaaggtacgggttgtctgttgcagatttattctcatggacccaaagctttttaatctactagtatgaagttattgttttagtttctgctaatcttgcaagtggcatgaatcaactacatttcttgtagacaggattgtggggcctttgggggaaaagagtggatgctatagaacactacaccactgccattgaggagttatgcaaacaggtgcaagtttcagtaattcattggaagcattttcatgctttcaccatgttgacactcgacagtgttaccagactacttgaccaccaattttccttcgataaacatatatttaccctgtaacaatcaaaataccaaacgaaattgcacacttgcattgcaggaagatgaggagagacacaaggtgatcactgatcctaatgctattatgccagctgcatttgtatctttcaaaagccggtggggagctgctgtttgcgctcaaacgcaacagacgagcaatccaacgttgtggcttaccgagtgggccccagaacctcgggatgttttctggcctaatctcgcgatccctttcgtcgagctctcagtccggaggcttatcatggccgttgcactcttctttctgacctttttcttcatgattccaattgcaattgtccaatcaatggcaaacttggatgacattgaacggatgcttcctttcctgaaacctataatagaaaggtgactgttattacccattgtttttgcagtttaatttccataaaaaatgcatttgcagcatgttgttgatcagtgcatctacatattttttgccttcctatcatgaaaacagttagataggtccaaattttgactagtaatgatactggtatgatggtaccatactgaaataacatccaatttcatataaataaatgcatatgcatttcaaactggatgtatgattggaagattttgcaattcattatgttacattgttgacataatttctgggtaaacatttgtttagcacgctgttgagtacttatttctttaagtcactctttcttgctaactaggatataatataaagcaacaggaatcgaaccactcatataataaactgtaataaagtagacttttggatttgttgaacatgctgtagcctgtaggagtgaacagttaccttctacatttctttatcattgaacaaggagtaatgtctgaatgttggaattgagtacaaccattaaaatgtttcattttgctgtcttcaaccttttgataaacccataaaagtgtgttgctgctgggtgtgtgactcctggagttagcaccctgctatgcttggacgtgttcagttctggatgttcatttgcattcctttgaatctgaaaatttatagggctaccaaatttagataatgacaggtcaaacgtgtatatcataacagaaataatgctccacaagtgcatagatgcatgacttgggttcatgtttaaacacttcaaaatttccctggctagataacaaagtgagtaaagaaaagaaaaataaatttaacaaaccccacatttgtcacattactgttgtttactgtttgtcacatagtgtttttctggatctaaaatcatttctgatgcaatgtactgcagaaattcactgaagtcaattgtgcaaggtttcttgccaggaatcgcattgaaaatcttccttatacttctcccaacatttcttgtgatgatgagcaaaattgaaggtcatacatcactatctggattggacaggaggactgcgtcgaagtattatttgttcctatttgtcaatgtgttcttggggagtgtaataactggaacagcgttccaacaactcaacaattttatccatcagtcagctaataagtatgctcaatctgtcattgcttctttgttatggatgtgggttagggggtgtgtttccctaaccccctgacccacattggttaagttggttaatgtttaccagctagccaataatactaataccttaccttgacaccttttgccttttgttttcacaagaattccagagattgtcggagaatccatccccatgaaagcaacatttttcatcacatatgtaatggttgatggctgggctggtgttgccgctgaggttcttaggttgaagccattggtcatgttccatataaagaatactttcttggtcagaaccgagcgagatcgagagcaggccatggaccctgggagcctggattttggcaccacagaaccaaggatacaactgtactttctgcttgggcttgtatatgctgtcgtgacaccaattcttctacctttcatcatagtgttctttagccttgcctatctagtattcagacaccaggtactagtctgccttcaagtttaaatatacccttttatcatattgccacattcacaatggcagaagcatacgtttccggtcattcttcaatcttctcttagcacggtctgctaatctttttttctgcttcttttttgcaagatcattaatgtctacaatcagcaatatgagagtggcgcgcaattctggccagatgtccaaagacgactggttatagcattgatagtatcacaaatcctcctgttgggactgctgagcacgcaggaagcagagaaatccactgttgctcttcttcctcttcctgtactgtccatatggttccactatgtttgcaagggccgctttgagccagcgtttataaagttccccctgcaggttagactgaaactttactcttcacacatgcattcaccatagcatatagtaaaattaaaaactaagctagaacaatcctgatacataaacattttggtcttgtaggatgcaatggtaaaggatacactggaacgggcaaatgacccaaccctgaatttgagagagtacctgaaggatgcatatgtgcacccagtgttccaaaaaaatgacatatatgagtttgctggcatcgacgaggaagagaagaaccccatggttgcaacgaagcgccaatcgcgaatgaacacaccagtagatagcaagttcaattccagttctggcactaatgaaggagagttcagtcggatggctcctacctgaagcttgatttttcatcagtcaatgtaaacattttgcagtttggtaatattgtaaatgttcaggcaaaaaggaaatacaaggtttaaacaatgttgg</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0393800, RefSeq:Os05g0393800