Os05g0402300

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Revision as of 10:20, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0402300| Description = Protein of unknown function UPF0005 family protein| Version = NM_001062028.1 GI:115463786 GeneID:4338736| Length = 2...")
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Gene Name

Os05g0402300

Description

Protein of unknown function UPF0005 family protein

Version

NM_001062028.1 GI:115463786 GeneID:4338736

Length

2297 bp

Definition

Oryza sativa Japonica Group Os05g0402300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:19595237..19597533

Sequence Coding Region

19595467..19595678,19595787..19595945,19596032..19596145,19597144..19597453

Expression

GEO Profiles:Os05g0402300

Genome Context

<gbrowseImage1> name=NC_008398:19595237..19597533 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:19595237..19597533 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgtcggcggcggagatgcagccgctggccccggcgggctaccgccgggcgccggagatgaaggagaaggtggacgcctccgcggtggacctggaggccggcaccggggagacgctgtacccggggatctcgcgcggggagagcgccctccggtgggggttcgtccgcaaggtgtacggcatcctcgccgcgcagctgctcctcaccaccgccgtctccgcgctcaccgtcctccaccccaccctcaacgccacgctctcctcctccccgaccctcgccctcgtgctcgccgtcctccccttcgtcctgatggtcccattgtatcattatcagcacaaacacccacacaactttgtttacctgggtctgttcacgttgtgcttgagtttcagtattggtgtggcatgtgctaacactcaagggaaaattgtgcttgaggcattaatattgacctcagctgtggttgcctctttgactgcgtatactttctgggcttcaaagaaggggaaagaatttggttatcttggaccaattctgttttctgctcttgttttacttgttgtgataagctttattcaggtgttcttcccattgggctctggaccagttgcattgtttggtggccttggagctttagttttctcaggtttcatcatctacgacacagagaacttgataaagcgccacacttatgacgactacatttgggcctctgttgagctctaccttgacatcctcaacttgttcctttatatcctgaacatgatcaggagcatgcaaagtgataactag</cdnaseq>

Protein Sequence

<aaseq>MASAAEMQPLAPAGYRRAPEMKEKVDASAVDLEAGTGETLYPGI SRGESALRWGFVRKVYGILAAQLLLTTAVSALTVLHPTLNATLSSSPTLALVLAVLPF VLMVPLYHYQHKHPHNFVYLGLFTLCLSFSIGVACANTQGKIVLEALILTSAVVASLT AYTFWASKKGKEFGYLGPILFSALVLLVVISFIQVFFPLGSGPVALFGGLGALVFSGF IIYDTENLIKRHTYDDYIWASVELYLDILNLFLYILNMIRSMQSDN</aaseq>

Gene Sequence

<dnaseqindica>1856..2067#1589..1747#1389..1502#81..390#agcaaccgaaatcccctcctgacctccttcctcctctctccccgattccccccacccacccaccaagcgcgtcggaagcgatggcgtcggcggcggagatgcagccgctggccccggcgggctaccgccgggcgccggagatgaaggagaaggtggacgcctccgcggtggacctggaggccggcaccggggagacgctgtacccggggatctcgcgcggggagagcgccctccggtgggggttcgtccgcaaggtgtacggcatcctcgccgcgcagctgctcctcaccaccgccgtctccgcgctcaccgtcctccaccccaccctcaacgccacgctctcctcctccccgaccctcgccctcgtgctcgccgtcctccccttcgtccgtacgtgtgccctcctccccatctgatgatgcttcggttgacctctatcttagatttcttgtgcttgatgagaaattgagaatggttttattctgtgatcggtcgtagattcatccgcgtcccgctgattagcagctggtttgatttgtaggctacatagttgaatctagatagatcggtgcgttactatatgccttgctgttggaatcaaaactttggcctctagatctaggatctaattagttcacgaattaatacttagaattagacgtagtaagttctgcatcatggatttgcccactcgcattctgaattgggatgtgaagtaaatgtttgtgttatattataaactaatgctgcaattgcttttcctataaattgtgaatagcatttctatagatcatgttcagcgacgagtttatgacaaactagttaatgcaaacgctgtcggaaaattttgttacaaatgttatgagaccttaaatgatatgattcatatgcattttggtttggccttatttgtttcccttgacatcatatgatgcgtttgtgttagtcaagtgcggagtgtgatgatatgggcatggtggggctgtctttagaagtgtagaactcttctgaacacttgtgtatccagattatttttttttctttcaattctgaaatttctgctttgtgtttgccatagacaagattgttttatcccctagttggatcaagtaggcagcacacataactgtgtaagagatagtcaatgtatttagtccggtatgagttatattttaatagtatatggaaaaatatcaaggaaagtctcaaatcttggatcagtggggctgtttttttttactccctgctttttgttcatgttagtgttgcgagtaactaaacttcttcatctgaattttgagaaaagcctgagtagatgacattgttaattgtttggtaggatggaatggttttggtgctctcagctaattttgtgttatttcttgcagtgatggtcccattgtatcattatcagcacaaacacccacacaactttgtttacctgggtctgttcacgttgtgcttgagtttcagtattggtgtggcatgtgctaacactcaaggttggttttctttcctttgcaagttttagttagtttcttcaactgccaactgtactttttacataacaatcatttgtgtgctgcagggaaaattgtgcttgaggcattaatattgacctcagctgtggttgcctctttgactgcgtatactttctgggcttcaaagaaggggaaagaatttggttatcttggaccaattctgttttctgctcttgttttacttgttgtgataagctttattcaggcaagtgtacactcattttgatacaatatacttaattcaaatagcgatcttaccattacgaaaccaccaattgtaataagcactttgccgtgatatgctgtgttgcaggtgttcttcccattgggctctggaccagttgcattgtttggtggccttggagctttagttttctcaggtttcatcatctacgacacagagaacttgataaagcgccacacttatgacgactacatttgggcctctgttgagctctaccttgacatcctcaacttgttcctttatatcctgaacatgatcaggagcatgcaaagtgataactagccagtccatcagcaccaaccagacgtattgtcaacttgctcagtgacgtcagtgtgtcctgctctattaagtactattttgaacagcgatctatataaccgtgaaaacctcgtgatgtattttgctgtcgtctgactcaaaggatgagaccgaagtacaatatatgtatagttttggttgtgttgagtatgactgtcggaaatgtgatcccatgattgtgacgtggtgcc</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0402300, RefSeq:Os05g0402300