Os05g0421300

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Revision as of 10:22, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0421300| Description = Armadillo-like helical domain containing protein| Version = NM_001062117.1 GI:115463964 GeneID:4338831| Length = 557...")
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Gene Name

Os05g0421300

Description

Armadillo-like helical domain containing protein

Version

NM_001062117.1 GI:115463964 GeneID:4338831

Length

5578 bp

Definition

Oryza sativa Japonica Group Os05g0421300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:20669837..20675414

Sequence Coding Region

20672220..20673188,20673660..20674496

Expression

GEO Profiles:Os05g0421300

Genome Context

<gbrowseImage1> name=NC_008398:20669837..20675414 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:20669837..20675414 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagaagatacaatctgattgcccttatcctggatgtttcttctgtgttatgaaagaggcaaaccctagtaaacgaagagcaagtgtactgaagttctttagggaacttccttctcaagatgatgatggtcaagttctccctattagtggtctttggaatactgcgatggcacatccaaatgaccctgaattcatcaacttggggatatttgaatgcatgtcagctcttatatggaagggactgaaaaacaggcgttggctttctcatgatcagaatatttacatcccatattatgcagcacatataattggatcctacacaatgaatatggaggagtttgcggaacgtgctgttcgtgctggtgtaatacctccattggttgaactcttacgaggcaggctaacttgggtagagcaaagggttgctgttagagctttggggcatttggctacatatcccagtacatttcctgcagttgctgaccatggagaagtacttgaacttgctattcaacttgcttcaagttctctagagattgtgtattctcatttttaccagtttgtggaccgaaggattggctaccactgtgaccttctcacacgaggcatgggtggtgtggaaatggaatctcgcaaagctgaggaatgggcaagccaacttcagtgctggtctttgcaactcattaactgcttcgcatttaagtctgaatttctccatgatatttgcaaggctgattttctagtcaagttacctggaatgtggggtggactcgtaaatgagaactcacctgctggtgttggtttgctaagaactatctgccagagcaagcttggccgaggccatgttgctaatattcctagtgttgttgaagctctctgcaacattgcccgttcttcagatgactggcaatacatggctgttgattgtttactttggttggtgcaggattcaaatacatgtcataaggtaatagatagagttgcctcaacactgatagatttagcaaatatctcaatgctcggtgattataaaaaacttggtgacaccattgtcacagtgctccaagaatgtatgcaacaatatgcaaattcacggaattcaattagtactcacaccaaagaacaaattgatgaactcttgagttccaagcagagttttaaattggagaagaatatgccaaaggaggatcttcatataaaacaagcagcagcattggttgttaagttggaaggcaattcacttttctcttcagggaacatagcaggagctgcagcaaagtactctgaagcacttgcgctgtgtccaatgaagtctaagaaagaaagagtggtgctttatagtaatcgagctcagtgttatctactcctgcagcagccattggctgccataagtgatgctacccgtgcattgtgccttcatagtcctttgaatcgccacgcaaaaagcttgtggagaagggctcaagcatacgatatgcttggtttagcgaaagagagcctgttggatgcaattctctttataaatgaatgctctcagtcgaatgatcctgacctgtcattaaagcaaaataaagttcctgattatgctgagcgtttggtgaagaagcagatgcgcacagcttggttattcagggaagcagctttgaaacatgggggaatccattgcgagggagaagctagtgatgcttttggtcaagaggcagatgactctgagtgggaaacagccagtgaaagtgatgctgagaatgatgcaacaggagaggcagatgatgaaactgaatggaagaacgataaccaagtatga</cdnaseq>

Protein Sequence

<aaseq>MEKIQSDCPYPGCFFCVMKEANPSKRRASVLKFFRELPSQDDDG QVLPISGLWNTAMAHPNDPEFINLGIFECMSALIWKGLKNRRWLSHDQNIYIPYYAAH IIGSYTMNMEEFAERAVRAGVIPPLVELLRGRLTWVEQRVAVRALGHLATYPSTFPAV ADHGEVLELAIQLASSSLEIVYSHFYQFVDRRIGYHCDLLTRGMGGVEMESRKAEEWA SQLQCWSLQLINCFAFKSEFLHDICKADFLVKLPGMWGGLVNENSPAGVGLLRTICQS KLGRGHVANIPSVVEALCNIARSSDDWQYMAVDCLLWLVQDSNTCHKVIDRVASTLID LANISMLGDYKKLGDTIVTVLQECMQQYANSRNSISTHTKEQIDELLSSKQSFKLEKN MPKEDLHIKQAAALVVKLEGNSLFSSGNIAGAAAKYSEALALCPMKSKKERVVLYSNR AQCYLLLQQPLAAISDATRALCLHSPLNRHAKSLWRRAQAYDMLGLAKESLLDAILFI NECSQSNDPDLSLKQNKVPDYAERLVKKQMRTAWLFREAALKHGGIHCEGEASDAFGQ EADDSEWETASESDAENDATGEADDETEWKNDNQV</aaseq>

Gene Sequence

<dnaseqindica>2384..3352#3824..4660#gaagaagcacattcctccgcttcctcatttcctcccaccgaaaaaaagctagggtttggagctgtgcgccgctgctcgtcgccgcccccatcctccgtcgcggggcgtcggcaccggctccctcctttccgtcggctggccgccaagaaaatctagggtttgggctgtgcgaggcagcgccggggaagcagggaagcggcgaggcggcaggcaggcaggcaggggcaaggccagatccgccgcgcgcagcggcctcgtcgggccggtggcaacgagggctcgttggctcgtcagatccagtgccccttttctccctccctccccctcctcgatttggtttgcggggggtgctcgccaaaagcttcggggtacgcattgcagaattttgttagtaatgcgctgtatgtgttgattgattgcgctttttttttttgcattacatttgaatttgaccgtattgttccctggtagctatatttatggactttattgttttgagtattattgtagctagcaagtcactttcatccatgtagtttgagatggacaagcggctcgctaaaaggcgaaagctgatgtttttttcttttgggccattgctttcttcgctgctgctattgtgactttgtatgccaggtctagattaatgaaaagaagacaggaaatatttgactgcctaaatactagaatttattacaagaatgattcaacctgccaaaaaaaatgttagagctcctttacttccatttgtgtgaagttttgaggggatgtgaatcatgtgacttgctttgtgataccatacatgtagccactgtttgtttgaggggtaggttgatttttgtaattgctagattttacaaaactgcaattatttggtcaaaactatcactttgctgcaacttaactaggtatttcacaaaactttaactagttgcaacattctgataaatcatgtactgttgttaccgttctctgaaatgcttagttaaagttgcagcaaactgaaatttactcaacgttatttgaacaactagtattgtattggagccattgatggtacacatatatgggcaactgttaggaagtctatggaggcttcttttcatgataggaaagaacatgagaacactctctctcacttttggtacagcacaacataagcattgtaaatacccaatgaaaatgttatggaatttagaaccagacattaaagaaaggaatgagactgaggctctgttcgttccctagggttcccaactccccacccttgttttccgcgcgcacgcttttcaaactactaaacggtgtgttttttgccaaaagttgcttaaaaaaatcatattaatccatttttgaaaaaaatagctaatacttaattaatcacgtgttaatgcgaacatcgttttacgtgccggggaggaacccctcctcccgaacagagcctgactactgaagccacatctcaacaagaactggatacagaatggtagatttgccacctatctcctgtcttcgtgataacttaacgcatagcggagcggggataggggcctgcctcggtgtcggtgggaaggctcacactcagccctgtgaattgattttggacgtcctttttgaaatatgagggcggattttggatttttcatggaggcagtttctgaagttccctttgattcttttttcctaggaaaaaaggttcgttcagtctgaaccaggggcatgttcttgaatgagaggctgaaagacctgttaatgtgtcatttagtctcagctgggcctgttatcaggagtaaatcacccactgagtccaaatgtttagagtattgtatgctcatcatgatgctgtaatttaactgttatctgcctgttctgtgtaatgtttcatcttccattttcatattcctgtaaccattgaaccaattcaatggaataagtctctgttaacattgattcaggttttagaaatgcattcactggtaatttcaagctggttcgaaattcttgaactttaacactagttcatatgtttggagcatgtagccatggtcagcaactgcaggaaattcttgaacttgaactagtgcagtgcaaacaagacagtctctagtaaatcacctatatcatacatgcatataacttacacatatttccatattatcatcttttgtaatagatgcaatagttctgttcacctttttctgacaagtaattctctcaaaactatcatgatcgttccatacagaagaatttcctttagtttgtccaatgaatgaatggagaaagggctgtgctcaatttactcatagttctgttttgacacagattggagtatgattttgaggatctgaataaaagaagtcagtaaaatcatttgtctctcacgatggagaagatacaatctgattgcccttatcctggatgtttcttctgtgttatgaaagaggcaaaccctagtaaacgaagagcaagtgtactgaagttctttagggaacttccttctcaagatgatgatggtcaagttctccctattagtggtctttggaatactgcgatggcacatccaaatgaccctgaattcatcaacttggggatatttgaatgcatgtcagctcttatatggaagggactgaaaaacaggcgttggctttctcatgatcagaatatttacatcccatattatgcagcacatataattggatcctacacaatgaatatggaggagtttgcggaacgtgctgttcgtgctggtgtaatacctccattggttgaactcttacgaggcaggctaacttgggtagagcaaagggttgctgttagagctttggggcatttggctacatatcccagtacatttcctgcagttgctgaccatggagaagtacttgaacttgctattcaacttgcttcaagttctctagagattgtgtattctcatttttaccagtttgtggaccgaaggattggctaccactgtgaccttctcacacgaggcatgggtggtgtggaaatggaatctcgcaaagctgaggaatgggcaagccaacttcagtgctggtctttgcaactcattaactgcttcgcatttaagtctgaatttctccatgatatttgcaaggctgattttctagtcaagttacctggaatgtggggtggactcgtaaatgagaactcacctgctggtgttggtttgctaagaactatctgccagagcaagcttggccgaggccatgttgctaatattcctagtgttgttgaagctctctgcaacattgcccgttcttcagatgactggcaatacatggctgttgattgtttactttggttggtgcaggattcaaatacatgtcataaggtaggacattcttaaatacatcacatgcatcacttaaagggactctacagcacgaccaatttttttttttgtcttgtcttaataacttggggtctactcagttaattttttccagattatagctattttttaattagggttgcttaagatctacgccagtaaaaaatgcaaaaactatatggaacatatactctgatgttaaattttagtttctgtcaatggactaatggaggcacacacactgtgttttaactggaatagttatgttgattgattagcattttagaaggttgttttgatgaggtctacgtggtcacttgtttttctttcttaaagtggtctttatgtgttcaattgttggcaacagcaaatttatattttggctgctaatttagtatgaatgcaagcattacagatctgttaatatctgttttaatgcatgtagtcatgtttttgtttcccttggtacaggtaatagatagagttgcctcaacactgatagatttagcaaatatctcaatgctcggtgattataaaaaacttggtgacaccattgtcacagtgctccaagaatgtatgcaacaatatgcaaattcacggaattcaattagtactcacaccaaagaacaaattgatgaactcttgagttccaagcagagttttaaattggagaagaatatgccaaaggaggatcttcatataaaacaagcagcagcattggttgttaagttggaaggcaattcacttttctcttcagggaacatagcaggagctgcagcaaagtactctgaagcacttgcgctgtgtccaatgaagtctaagaaagaaagagtggtgctttatagtaatcgagctcagtgttatctactcctgcagcagccattggctgccataagtgatgctacccgtgcattgtgccttcatagtcctttgaatcgccacgcaaaaagcttgtggagaagggctcaagcatacgatatgcttggtttagcgaaagagagcctgttggatgcaattctctttataaatgaatgctctcagtcgaatgatcctgacctgtcattaaagcaaaataaagttcctgattatgctgagcgtttggtgaagaagcagatgcgcacagcttggttattcagggaagcagctttgaaacatgggggaatccattgcgagggagaagctagtgatgcttttggtcaagaggcagatgactctgagtgggaaacagccagtgaaagtgatgctgagaatgatgcaacaggagaggcagatgatgaaactgaatggaagaacgataaccaagtatgagaaaagctgagaaccaggtacattatgtctcctgctagttaatttctttgcaggaagaaacatgaagattcctggaagtgattttgatgcttgtacttcaaagtcttgcttagaatgagttaatatgttttttcacatatagtattccttgacaattcaggagattactgttttgctatgtgtaaatcagttgtcactgagacccctccggttccattaattttcaggtttccttgccattcaggacgattgttggtgttgcttatgttagtagaaacaatggaaccacctgcttgtcttctgtacgagtaaactgaaacaaagttgtgaactggacggagccagcttacagaaagccttgcaagaatggctttcaaaagtgacaaatctggtgccactgtatttatcctattgagaacgaggctgaatttttcaatgccatttatcatctcatcaccatgttggatttgtcagggttgtgcttgtgattcgttcgatgtgttctattcggggagtagtttcatgtttggtgttgtaaaatgtgtttccaccgatttttcagcttttgaatggacaaaactgtgccttctttttttcctcctttcttgatgtgtgaagttttgccaagaggcaaactctggcactgttttctatattctgcagtattgaatgtacattttcttcagggtggatgctgtgttttcttattgtaaaactctatattggttgaggattaactggtttctagtttatgtgtccgtaggttgagtttactatgtgctcagtggttgtctgcctttgtctgggtgctcagatagcgacctgaaatgtaaggcttgagaacttgagtgtggtgctcaaaccatatgtaaatattgttctgcctattcttaatgttcatttagtacgccgttatgc</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0421300, RefSeq:Os05g0421300