Os05g0443400

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Revision as of 10:23, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0443400| Description = Glycoside hydrolase, family 17 protein| Version = NM_001062209.1 GI:115464148 GeneID:4338929| Length = 3563 bp| Def...")
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Gene Name

Os05g0443400

Description

Glycoside hydrolase, family 17 protein

Version

NM_001062209.1 GI:115464148 GeneID:4338929

Length

3563 bp

Definition

Oryza sativa Japonica Group Os05g0443400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:21745807..21749369

Sequence Coding Region

21747064..21748257

Expression

GEO Profiles:Os05g0443400

Genome Context

<gbrowseImage1> name=NC_008398:21745807..21749369 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:21745807..21749369 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>cgtcgtcgtgtcggcggcgacgtcgccgccgctcaagttcgggatcaactacggccagatcgcgaacaacctgccgcacccgacgcaggtgtccggcctcctccagtcgctgagcgtcaaccgggtgagctctacgacgccgacccggccgtcctcgccgccttcgccggcaccggcgtggagttcatcgtcggcaacgaggacctccacaacctgaccgacgcgcgcaaggcccgggcgtgggtggcgcagcacgtgcagccgttcctcccggccacccgcatcacctgcgtcaccgtcggcaacgaggtgctctccggcaaggacacggcggcgatgcagagcctcctcccggccatgcagtccgtccaccaggcgctgctcgacctcggcctcgccggcagggtgaacgtctcgacggcgcactccgtcaacatcctcgccaccagctacccgccgtccgccggcgcgttccgggaggacctcgcgcagtacatccagccgctgctcaacttccacgccgaggtcggctcgccgttcctcgtcaacgcctacccgttcttcgcctacaaggcgagcccggcgagcgtgtcgctgccgtacgtgctgttcgagcccaacccgggcgtacgcgacccggccaccaacctcacctacgacaacatgctgtacgcccagatcgacgccgtgtacgccgccatgaaggccatgggccacgccgacatcaccgtgaggatctccgagaccgggtggccgtccaagggggacgacgacgaggtgggcgccaccccgcagaacgccgccgcgtacaacggcaacctcatgaagcggatcgccgccggggaagggacgccgctcaagccggccgtccccgtcgacgtgttcgtgttcgcgctcttcaacgaggacatgaagcccggcccctcgtcggagaggaactacggcctgttctaccccaacggcacgccggtgtacaacatcggcttcgacgccgcgtccttcagcccgtcgccgacgacatccacgttttcctcctcttccaggccaacggtaacaaaaaagaatttgaattttattctacttcgaaattttgaatatgcaaatttgagtttcatagaacaaagagaacttctaatggccatgtcttctcttattgtcttaccagaaaaaatatccgtgcgttgcaacgggtga</cdnaseq>

Protein Sequence

<aaseq>RRRVGGDVAAAQVRDQLRPDREQPAAPDAGVRPPPVAERQPGEL YDADPAVLAAFAGTGVEFIVGNEDLHNLTDARKARAWVAQHVQPFLPATRITCVTVGN EVLSGKDTAAMQSLLPAMQSVHQALLDLGLAGRVNVSTAHSVNILATSYPPSAGAFRE DLAQYIQPLLNFHAEVGSPFLVNAYPFFAYKASPASVSLPYVLFEPNPGVRDPATNLT YDNMLYAQIDAVYAAMKAMGHADITVRISETGWPSKGDDDEVGATPQNAAAYNGNLMK RIAAGEGTPLKPAVPVDVFVFALFNEDMKPGPSSERNYGLFYPNGTPVYNIGFDAASF SPSPTTSTFSSSSRPTVTKKNLNFILLRNFEYANLSFIEQRELLMAMSSLIVLPEKIS VRCNG</aaseq>

Gene Sequence

<dnaseqindica>1113..2306#atgagagaaaacgcacgaccttaataatgcatgcgtaactgttctcccgtcacgacctcaagagagctcagcctaaggcgggcagcagctaagccagaggccgggatggagctctgcgccgtcttcttctcctcggtcttctccctcctcctcctcctcctcctctcagcaggtagggatactcatggctccttcgtttcattccattcgtgcgttccttgcgtgtttttgtcagtgtggatcatatggaagactgaaacacaaggatcaaggatcgatggtttagttccttgtgttctctgtttcttcttctccttctcgtttcatttcgaagagaccattgatggcttggagcgctttgagtgcagttttaagaatttaagggtgtttacgcaaaaaaataaaatagaataaaggagagtaaatttgagcgtggagaaatgcgacctttgtactaccgtgcaaaacagctgtgctggtgttatcgtctacaggaagtgaaaaacagtgaattgaatcaattgatgatgatgcagttgtctacaatgagcctatgaggtcgttttcttcgattaatcaagcatgtttcaggcggctggtccgacgtgtactggatagtgaaaacattgaatattccgcaccacgcggtgatcctgatccttttgctgaaaattttcacggccatttgatttgacattgtttgatatttttttctccctttgattgcaagctccgtgtttctgctcgtcgaaaacgacctcctacccaagatcatttcatgtagtttaattatgtgatagggaaacttcccccctggattaacttcttactatctcttacgatatttcgaatgactggttaaaaaaaagatatttcaaatgccttgctgattatagcaattaactgagcttgaaatggtaagcatcatgttcagacatgataagctctctttccctgacaaaaacaagtaccattttttttctttttacgtaactggcataaaaacaggttaaatgttgccgatgcagcgctgctatacaaaaatgcaagtgtaaatttcatttttcatttctgccctccttaatcttggtattaatcaccgcagccaatgacgtcgtcgtgtcggcggcgacgtcgccgccgctcaagttcgggatcaactacggccagatcgcgaacaacctgccgcacccgacgcaggtgtccggcctcctccagtcgctgagcgtcaaccgggtgagctctacgacgccgacccggccgtcctcgccgccttcgccggcaccggcgtggagttcatcgtcggcaacgaggacctccacaacctgaccgacgcgcgcaaggcccgggcgtgggtggcgcagcacgtgcagccgttcctcccggccacccgcatcacctgcgtcaccgtcggcaacgaggtgctctccggcaaggacacggcggcgatgcagagcctcctcccggccatgcagtccgtccaccaggcgctgctcgacctcggcctcgccggcagggtgaacgtctcgacggcgcactccgtcaacatcctcgccaccagctacccgccgtccgccggcgcgttccgggaggacctcgcgcagtacatccagccgctgctcaacttccacgccgaggtcggctcgccgttcctcgtcaacgcctacccgttcttcgcctacaaggcgagcccggcgagcgtgtcgctgccgtacgtgctgttcgagcccaacccgggcgtacgcgacccggccaccaacctcacctacgacaacatgctgtacgcccagatcgacgccgtgtacgccgccatgaaggccatgggccacgccgacatcaccgtgaggatctccgagaccgggtggccgtccaagggggacgacgacgaggtgggcgccaccccgcagaacgccgccgcgtacaacggcaacctcatgaagcggatcgccgccggggaagggacgccgctcaagccggccgtccccgtcgacgtgttcgtgttcgcgctcttcaacgaggacatgaagcccggcccctcgtcggagaggaactacggcctgttctaccccaacggcacgccggtgtacaacatcggcttcgacgccgcgtccttcagcccgtcgccgacgacatccacgttttcctcctcttccaggccaacggtaacaaaaaagaatttgaattttattctacttcgaaattttgaatatgcaaatttgagtttcatagaacaaagagaacttctaatggccatgtcttctcttattgtcttaccagaaaaaatatccgtgcgttgcaacgggtgaaaactattttaattttattatagttaagatgaaatttattgtgggatttcacttggatatatatatttttagaaaatcatgagctgcaattaggagtctgttcgtctaaagttatcatgcaagttttcttatacaactccttatgtatttccaaaagcgaacgaacttaaaaaccgactcatacatgaatgacatatcaaagtaccaacaaaaacatcttcaatttttatatattgtcttattagaaaacgtacattttttttttcgccagaccttaatataatggtaagtttctgattgcaaattattttgcttatgttcgttctgcagagtacatttctgatgggggtggttgtcctactcgccgcattcctcctctgacaattttctccacaagtatattgcacgaatgatttgggattgttttttgaccgatatagttcgatttgtggttggttgcatagcacagaaaagcagatacattgttctaacctcgaggtaagcttgtcttgaccatgttcttgttcagttgctcacacagttttcagaaaccgttttttgtcagtaaaattgccatcttacaagttacaactaggttattgcttactgtgttagccatgaaattgattagttcagcataattttgtagacataatggtaggtgatgggtcgatcctatctcagtggcaagatatgtttggacattttcgcatctggtgcgtcatgtgaaagatgtcgttcagttagcgcatttcccagggaggtaggccggtggttgatcggttgttgcatgttttaggattctagctctggctatctcttcagaactctaaactgaccgaccaaccaacgcccaacgagaagattctagtttgcgtcatgggcaagaatcgaataagcatttggcacagaagtgggcattattcagaagccattgattgttcatcaatttcgtcaggaacagagcattaaactaactaaatcctcaataattttctcatttcgttatcttaattgtggaatcttggaagaattgaattgactgtttgttgtagaaaattaggtgggcttttttttttcattctagcatatggatgtttaggcagatctcttactattcctcacaattgaattaggtaggagtaagaagagtactctgtcgctaagttgacaaaatgtggaatatatgcgaggacagcgttttcattcattgtatagtggagatgatcaaacaagactgtactttacctgcttttg</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0443400, RefSeq:Os05g0443400