Os05g0446800

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Revision as of 10:23, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0446800| Description = Similar to Arginyl-tRNA--protein transferase 1 (EC 2.3.2.8) (R-transferase 1) (Arginyltransferase 1) (Arginine-tRNA--p...")
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Gene Name

Os05g0446800

Description

Similar to Arginyl-tRNA--protein transferase 1 (EC 2.3.2.8) (R-transferase 1) (Arginyltransferase 1) (Arginine-tRNA--protein transferase 1). Splice isoform ATE1-2

Version

NM_001062225.1 GI:115464180 GeneID:4338945

Length

8065 bp

Definition

Oryza sativa Japonica Group Os05g0446800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:21949043..21957107

Sequence Coding Region

21949365..21949487,21949847..21950162,21950920..21952077,21952192..21952342,21955119..21955157
,21956827..21956974

Expression

GEO Profiles:Os05g0446800

Genome Context

<gbrowseImage1> name=NC_008398:21949043..21957107 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:21949043..21957107 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggccgacggcgccagcagcagcggggccgcctcggcctccggccccggtggcgggggcggcggggagtcggtggtgatcgactacggccggcgccgcacggcctgcggctactgccgatccaccggccagacgagcatctcgcacggtctatgggctaacagcctgagagctgatgactatcaagctcttcttgaccgtgggtggaggagatctggttgttttctttacaaacctgagatggaacgtacttgctgtcctcaatatacaatacgcttgaaggcaaatgatttcatttgttcgaaggagcaaggtcgtgtacttaaaaagatgcaaaggttccttgatggtgagcttgatccacaggttggaagtccacagaataaaactagccctacaaaacattcactcgctgaacctatgaatatgccggtctcaaaaatatccaagacattaacaaatgattttcaagcagccaaatgtccaaatttatttgaagaagatgagttcatcagttgcctgtctagcaaaattaatgaggcagtgggtatgtccttccaagttggtacattaggttctgatgttcaactccctaaagctgttgtaaagactgttaaaccacaactaaaaaagaaagtaggaggagcatcacaagacaagaaagtaggagaagcagtacaagatttattgtacacatgtaatataagctttcaaatagtggcagaaatcagacgtgcattgcctaaggagaaggatgctaatcacaataaagtagtagcagatatttctccaaactctattgcagaaaagctggccatgacaatggagtgccatggagatattgctggtttagcagtaaaagcctgcaatggccatctgaacttctattcagtcaccaatcagacaaagcagaacaaaaccagtatcattgtgtctacacatgctccagataaatctagtagctcaaagcaaagctctgtgaacaaaaatactgtaagagttccccagaaaagaagaaagcttgaaattaaaatgagaaggtcacattttgatcctgaggagtttgctttatatcaaagatatcagacaaaagtgcacaaggagaagaaagtttcagaaagctcatacaagagatttctagtggatacaccaatcgtgtttgttcccccgcggagtggtgataatacagttccaccttgtggatttggttcatttcaccagcagtacagaattgatggaaaacttgtggcagttggtgtagttgatatccttcctaagtgcctgtcaagcaagtatttgttctgggatcctgactttgctttcctatctcttggaaagtatacagctctgaaggagatagattgggtcaagacaacacaggagcactgccccaaccttcaatattattatcttggttattacatacattcctgcaataagatgagatacaaagctgcgtatcgaccatcagaacttctctgtccagtccgtttcgagtgggtgtgctatgacagtgccaaacgtttactagataagagcctgtattctgtcctatctgattttgcccaaatacaagatgagatgcctcagccacagaattctcatcttgatactgagttatcaaaaaatgacaattgtgagtctcccatcgatgaggatgatgaagatttgtcctatgatgactcagacatgatggttgatgaagagatggttcgatcagaatccaacactgatgtaatggaggattgttccagcataattgattttgaaaatgtcatgatggatctgaatggttctcgagttaaatataaggatcttctgggagtcgttggacgaatcgagaggaggcacctcgaacagctagaaaggcaattgagcaaatacgtgaaagttgtagggaaggagctatctgatcgcatggtttattccctgtag</cdnaseq>

Protein Sequence

<aaseq>MADGASSSGAASASGPGGGGGGESVVIDYGRRRTACGYCRSTGQ TSISHGLWANSLRADDYQALLDRGWRRSGCFLYKPEMERTCCPQYTIRLKANDFICSK EQGRVLKKMQRFLDGELDPQVGSPQNKTSPTKHSLAEPMNMPVSKISKTLTNDFQAAK CPNLFEEDEFISCLSSKINEAVGMSFQVGTLGSDVQLPKAVVKTVKPQLKKKVGGASQ DKKVGEAVQDLLYTCNISFQIVAEIRRALPKEKDANHNKVVADISPNSIAEKLAMTME CHGDIAGLAVKACNGHLNFYSVTNQTKQNKTSIIVSTHAPDKSSSSKQSSVNKNTVRV PQKRRKLEIKMRRSHFDPEEFALYQRYQTKVHKEKKVSESSYKRFLVDTPIVFVPPRS GDNTVPPCGFGSFHQQYRIDGKLVAVGVVDILPKCLSSKYLFWDPDFAFLSLGKYTAL KEIDWVKTTQEHCPNLQYYYLGYYIHSCNKMRYKAAYRPSELLCPVRFEWVCYDSAKR LLDKSLYSVLSDFAQIQDEMPQPQNSHLDTELSKNDNCESPIDEDDEDLSYDDSDMMV DEEMVRSESNTDVMEDCSSIIDFENVMMDLNGSRVKYKDLLGVVGRIERRHLEQLERQ LSKYVKVVGKELSDRMVYSL</aaseq>

Gene Sequence

<dnaseqindica>7621..7743#6946..7261#5031..6188#4766..4916#1951..1989#134..281#aggctccagctcttcttcaccctaacccagatccgcggggacccagccgattcgcccagccacgccaccgagcgctcgtctcgtctcgtctctcgacccaatcccgtcccccggcgcgacgccccgccgcgcgatggccgacggcgccagcagcagcggggccgcctcggcctccggccccggtggcgggggcggcggggagtcggtggtgatcgactacggccggcgccgcacggcctgcggctactgccgatccaccggccagacgagcatctcgcacggtacgatcccggaaaagtccctttgggtgaaagggaggaaaaggaaaaaaaaagaagagataaaatagaggactagcggactggggttctgtctgcgtgcggagttgttctgtcttcggttcgagtcgatgcgtatgattgctagatgaccccgaaacaatcgaatttcaggtgtagatattgccgccgatgaaattggctaagtaccatgtatttagtagcacattacgacaccatgtctcataatttgggttgtggagaatcgattcgttgtttatgccagcttatgctcaggaattttgttagagcctatgcgaatacatgtgtggatggtaatatgcatcgttggacgctagtaacgcaggccacctataatcttgtggcctgggtctgcccatgctctcaaggaagtaacatttggccaccaaactacaggatgtgaagtactgctgatagcctatcaacgctgatcttgaccccctttattttactagcgtatgctactgatcttgtctttattagatatggccttagagcgtttcagatgcctccgttttgcgcttcaccttgtttacatcaatggacatccaattctgtctctgaaatgggatgaaaatcatgctgccgacgtgcttattgtctactctcagtcataggattagtatagaacacataatgttatcaacagctagtagagtcgcctgttgcaatttcatggttattcaaagttgtatctgtgacgtgtcccttatggttatgactacaaatatgttatacgatggtgatagttgtaatatgttgatgcaattattctgttgttaatgtccctacctaaattggtgttatagattctttatgtttcttttggttagtgatggtatttttccttttataattttcaaggtctctaaggaacgggccttcaatatcataggttgtttatataagaataaatttcacaaaaccccaggttttgaaacataattaccacaaaccccaggtttcagggtctactttaagaaaccccataatttgaggtattccatttcacagaaccccacttccgtcaataacacgttgttccctgtcatctcacatgaagggcctgctggttagtcaccattcagctagcctgtcatctcacgttgttccccgcattcatcttcctctactgctctagatctgagcccaatcttaaaaaaaaagatctgagcccatacttgcaccaccgagtagcagaacggggaatgtaggatctccatgttggctcatcacccggagaaatttccctcaccgctctcctactcctcaccattgggatccttaaccacgccttcggcttctcttttgatcttctcaatggaaggcagggaaggggaaggagaaggagaaaattgtggttgacatgcaggacccacctgtcatttgccggaagttatagcagaaccggtgttatgtggtacatatgtctcaaaaagccagggttttatgataaaaacgtaatatctgggcttttgtaatacatgtgcctcaaaacctggcattttgtgaaattgttcatatttatatagatagttcatccttgtttttctccatttttttgttattcttttgaagcctattttaaaaccttttactaggatccttacttattctacttatcttgcaggtctatgggctaacagcctgagagctgatgactatcaaggtactacttttatttaattgcatattttccttctgtatgcaacctggaactgtgcttcttttaaaatagagaccactaaaattgaagtggtaccaagtaacaccaccaaaatttttcatctctattctataccaccaagtgggaacaaatctaccgaaaataccaccaccatcagttcatggggtagcagttttaagaaggaccagaatgtgtgccgtcgccgatgattctacatcacttccgctagtacttgctggagatccctccattgcctgtccaccacgtcctcagtcccatccccatggacggcatcaactcgttcccggtgcccctgttctaggttttggccttgaatggccagtgtggccacctatctttatcgccaaccaactcctcgacaatcttgtggtgccatgggtggcgtctcaaccgtcattgtctcattgcgcgggctggtggcggtgtggctatgtgctgaccagaggtgagggaggagctctctgcacacagttagcagccgcaacggtggacggtaacacctatgctactccttgcccaagcttgatgcaagcataaaatctgggtgtgctttgtgcagttaaggcagggggcttctcatggagtaatggtgatctggggtgatggaggttcatgctgagagaaatggaaccatggaggagcagagacaatgaagaagaagattaggggtatttatgtcatttgtcatcaaaattgagttgagacagcttggctgacggtagtacagtttatcttttagagtggtattttttagacaatgacggtagtacagtggtacgagtatttttttagaggttttagcctatctggtggtttttcttggaggtgtacagtttttatggtattacttgctaccgcttaaattttggtggtattgatgtatccctcttatcttattttcagtaaaattgagaaatttgcatatgtgccatcgcaaaaaactggtttcgctagaatgctgttgctcaaatgggctacaataaaatgccacggctaaatagggggtgttcgctagaatgtcatcgtggacggtatttcccttggatcttcttcttcctccaacacctgccaattccctccatgtcatgtcgtcgtcccatggcagagcgctccaacctggcgcatccgatgaagtagccgtcgctgcatatgcattggttacagcagcaccagcactacaggatgccatcgccgccgagcacgaatgtgaagcagagctccttgtcttggcagtcaggcactggtggtgggcatcatgagctgctgctggagccaacgatggcatgacatggaggggaatgaccagcacccaacgtcgagggaggaagagaagatccaagggcaatattgtccatgatggcattctagcgaacacccctcgttcgaccgtggcattttatagaagcccatttgagcgatggcattctaatgaggccagtttttacagatggtacagggacagattttggaggtcaaatgtttcttctgtttgtacacatactttgtagtttgtaatatgaatataccatgtatgcctttcagttctcatccttaaaaggctcagaaaaattaacactccatatatggccaaagaatacatttataattactgtaaggatttggaattttggatgactaggtagctagaatcaagtggaatttaattggtcttttctttattaattattttgtccaagcattgaattgcattacagagtgtgatgtaaatagtggcaggtaatgattctgttaaccaaagacttggggtatcccagatgattatggacacatgttctttgtacagcctcctggcttctgaagttggctgaagagctatgcatctggttgggggaggggtctgtttatggtatttgaatgtatatttgtacaaagctagctgttttttcttgaacagagctaaaggaaattcatgataactctatagaaaaactacactgggttattttgggtgccttttagttgagatttcataatctttgagtgtccatgggcatgatgacacggttttatttcatcaggatgcttaggatgtgaacatttagcaacactaagttccaccatctctttttttgtccatcttttttttttaatgtccgaccgttcgttgcaggcgtgtgcttcaaaaggcaccatagcaaccctaaaaaaaggcatcatagcaggttcaagatccatttaatgcataacaaagttatttagatgaaattcttggatgaggcaggatgaatacatgtgttgtgatgagcatgctgatagttgttttttctatattatacatgattcagaaatataacagcttgctacgctatactcaccacgtaaaaagcaatcatattgcattattttttattgccatttcacctacggagaaagaaattatatcataaccataatatgtaaaagcaacagcttgtgacttcaaatcagatctataaaacaaagatgttttctaaaagttactttgaagcaatttgcaacagaaaaaaaatgcataccatgaaacaagtgtattgagaacacagatgcatgtgtggaagttgtgagtttagctagagatttgatagaaattagagcaaaggtgaggtgggataagctgacttattggtgaagtaatagaattttataattgagatattggatattcatagttttttaaaaagtagttcttctgctggcataatttatcatgattgaaaattatggctactgtttacagctcttcttgaccgtgggtggaggagatctggttgttttctttacaaacctgagatggaacgtacttgctgtcctcaatatacaatacgcttgaaggcaaatgatttcatttgttcgaaggagcaaggtcgtgtacttaaaaagatgcaaaggtacacaccttttgttttatattttgcatatgcacctgtgaaattgttaacatatgtcgtttagctttagtcactaaattgtcctgtgtcatgtcttcacgcttcatttcacaggttccttgatggtgagcttgatccacaggttggaagtccacagaataaaactagccctacaaaacattcactcgctgaacctatgaatatgccggtctcaaaaatatccaagacattaacaaatgattttcaagcagccaaatgtccaaatttatttgaagaagatgagttcatcagttgcctgtctagcaaaattaatgaggcagtgggtatgtccttccaagttggtacattaggttctgatgttcaactccctaaagctgttgtaaagactgttaaaccacaactaaaaaagaaagtaggaggagcatcacaagacaagaaagtaggagaagcagtacaagatttattgtacacatgtaatataagctttcaaatagtggcagaaatcagacgtgcattgcctaaggagaaggatgctaatcacaataaagtagtagcagatatttctccaaactctattgcagaaaagctggccatgacaatggagtgccatggagatattgctggtttagcagtaaaagcctgcaatggccatctgaacttctattcagtcaccaatcagacaaagcagaacaaaaccagtatcattgtgtctacacatgctccagataaatctagtagctcaaagcaaagctctgtgaacaaaaatactgtaagagttccccagaaaagaagaaagcttgaaattaaaatgagaaggtcacattttgatcctgaggagtttgctttatatcaaagatatcagacaaaagtgcacaaggagaagaaagtttcagaaagctcatacaagagatttctagtggatacaccaatcgtgtttgttcccccgcggagtggtgataatacagttccaccttgtggatttggttcatttcaccagcagtacagaattgatggaaaacttgtggcagttggtgtagttgatatccttcctaagtgcctgtcaagcaagtatttgttctgggatcctgactttgctttcctatctcttggaaagtatacagctctgaaggagatagattgggtcaagacaacacaggagcactgccccaaccttcaatattattatcttggttattacatacattcctgcaataagatgagatacaaagctgcgtatcgaccatcagaacttctctgtccagtccgtttcgagtaagacgcttctcttaatttttgacacatccatgtattattttatgatgcaaatgcaacagcacaggctctatagagaagcaacacggttgtgttctgtgtattagtcttagttgaaaaataatactacctctgacccaaaatataaggagttttaggattggacacaggtgttaagaaaattggtggaattaaatagggggaggttgtaatgtttgaggaggtgggtagtgaatttgaatggtggaaggttgttattgattgagaagagaatgtaggtggagaagttattatattttgggactagttttgaaggctagaagttgttatattttaggacggaaggagtagctaggatgtatctcctaactgcatctttgaggattctgattcaaattcgaaggattttgttcaagtctgaactgaggttcccaaaaagagtccatctcatcctaacaggcagtcttaagggtataattaatttgcacgagttttctgtaaatcacggtttacaattcaactacatgctatgaaaaaatacagtaatttctcctgctcaaaaagattatcacgaacatagctaattttatgtttccaacccaaatattcaaaccgcaggctttcaaattctaggcgatagtttgttttgcttattgaaacaaagcgtttatgataaagttttggaaggatgactattttgtctttctttggctgctaaactatccatacatctctgatattcatgtcctttgtgcaggtgggtgtgctatgacagtgccaaacgtttactagataagagcctgtattctgtcctatctgattttgcccaaatacaagatgagatgcctcagccacagaattctcatcttgatactgagttatcaaaaaatgacaattgtgagtctcccatcgatgaggatgatgaagatttgtcctatgatgactcagacatgatggttgatgaagagatggttcgatcagaatccaacactgatgtaatggaggattgttccagcataattgattttgaaaatgtcatgatggatctgaatggttctcgagttaaatataaggtactacaaactgcatatacataaaatttgacctacaacccaaaagaattgcaacggaggcgtgtaatcaggcagtctgcaattttcctttttaatcttgtcatgctgttattaaattgcccatccttttgcaagtcctttgtacagaacatgctaacaactatatatgctgcatatattgaaactgcataataattgtgtaggaattatatttctttgctctcattgtgttaccttatctatccgacaatatgttcaaggctgttgatttatgcagaatgcattaattgatgctttttaatactgctatttagtttgctcatgtactgcaacattggtttttttactttcgctttcaggatcttctgggagtcgttggacgaatcgagaggaggcacctcgaacagctagaaaggcaattgagcaaatacgtgaaagttgtagggaaggagctatctgatcgcatggtttattccctgtagttggcctgcaattctgtcccaagggagcaatgcgaccatttagaggtacaataacatgtttatgctaatcgcttcgcagtcgaattctggtgggttcaggttggaggctggaatgacacatttttccggccgattcgttatctgtcattgaagtccgtattccataaactgttggccgaagggtatagcacaagtcgtttggtttctgcacatgattctacataaaaatagcacatctgtttcttgatgaaaaaactcgaggaccgcaggcgttgaaatgagaagaatatgtgatttacagagtgtccaactgttaaacagc</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0446800, RefSeq:Os05g0446800