Os05g0470700

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Revision as of 10:25, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0470700| Description = Zinc finger, RING-type domain containing protein| Version = NM_001062344.2 GI:297604639 GeneID:4339072| Length = 249...")
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Gene Name

Os05g0470700

Description

Zinc finger, RING-type domain containing protein

Version

NM_001062344.2 GI:297604639 GeneID:4339072

Length

2496 bp

Definition

Oryza sativa Japonica Group Os05g0470700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:23147481..23149976

Sequence Coding Region

23147883..23149571

Expression

GEO Profiles:Os05g0470700

Genome Context

<gbrowseImage1> name=NC_008398:23147481..23149976 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:23147481..23149976 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggccgcggacgatgccgcgcggagcagcagaaggatggatctgaacctctacctcggcctcccccgcgccccgcgcctgcgccgccccgatctcggctccgacctcgcgctcggcaccccgatgctctcctcctcgccttcctcctcggcggcctcggccgacgcgccgccgctggagacggagccgctccacccgccgtactcaccgccccccgccgagcttgtgcgccccccgacacctctgcccgagccgtacgacccgtcggctcccgaggcgcacccgccctacgtgccgcctcccgtgccgcccccggaggcgatacctgagctcgctgacgaccttgagttcggcttctcccacccgccgcttctgctgcggcccagcgagctgcttgggtgggtagaccggccatcgtcgtcgacggcctcctcttccttccgcccggagcgtgtcgaccgctaccgtccccccgtgatctgcctgaatagccgccagagtcgctgcctccgtccaagacggttcaggtcggaccttccgcctctcggctcggaggcccctgccctggagaacgacgctgcagcacaaccgccaccgcaagagcctatgcaagatacggttgaagagaacaaggtggtcgccgatggcgctatcgtgggtgcctcagaggaggagccagccgaacgtggcaagagcgttgcgatgtttgagtgcaacatctgcttcgagatggcttccgagcctgtggtaacttcgtgtggacatctcttctgctggccttgtttgtaccaatggctgcatgtccactcaactcacaaggagtgccctgtctgcaaaggcgaggtcactgaagggaacatcactccaatttacgggagagggaattcgacttcggacgcggaaaagaaggttgcggaggagggaaatgtatcaggccctacaatcccaccaaggccacatggcaatcggctcgagagcttccggcagaaattccaccatttgcgcccgatttctagaaggcttggcgaggcacatgggatattgtcttcttggaggcgcatacttgatcagcagattatgaatagtgtgagtaggtttgaggggcctcctgaatcaactgtccaggaaatgattgatcatgctcatcatgctagccgtttaggtcgaattactactagaatgagggcaaggaggttgcagagggaagccgaaaactctacatttgttgcttcttctgctgcggagagtgggctgccagcaaacagcacatcggatctgcctaggcgtagctcaagtccattttcctcggaaagaattgatttattgcaacactttgttgaccttgcaagcacggaaagattggcaagcgctgtgagtgaccttagaagaatggttaggccgagcccttatggagcatcaacttcatcaaatccaccaaatccaccaaataccgagctgctgccagttgatgggaatcatgttgccgttgcactagctgcagatcaagcttccaattcaagcaccatggctgtaattcaggaggatgctgcttttactgaaagcacaggggaaccaagtaatgcagggtcttcgagatccctgaggaggagaggaagaaatgatgccttaggttctttggatgtggatggtgtgggactacaccggaacaagagaaggcggctgaactga</cdnaseq>

Protein Sequence

<aaseq>MAADDAARSSRRMDLNLYLGLPRAPRLRRPDLGSDLALGTPMLS SSPSSSAASADAPPLETEPLHPPYSPPPAELVRPPTPLPEPYDPSAPEAHPPYVPPPV PPPEAIPELADDLEFGFSHPPLLLRPSELLGWVDRPSSSTASSSFRPERVDRYRPPVI CLNSRQSRCLRPRRFRSDLPPLGSEAPALENDAAAQPPPQEPMQDTVEENKVVADGAI VGASEEEPAERGKSVAMFECNICFEMASEPVVTSCGHLFCWPCLYQWLHVHSTHKECP VCKGEVTEGNITPIYGRGNSTSDAEKKVAEEGNVSGPTIPPRPHGNRLESFRQKFHHL RPISRRLGEAHGILSSWRRILDQQIMNSVSRFEGPPESTVQEMIDHAHHASRLGRITT RMRARRLQREAENSTFVASSAAESGLPANSTSDLPRRSSSPFSSERIDLLQHFVDLAS TERLASAVSDLRRMVRPSPYGASTSSNPPNPPNTELLPVDGNHVAVALAADQASNSST MAVIQEDAAFTESTGEPSNAGSSRSLRRRGRNDALGSLDVDGVGLHRNKRRRLN</aaseq>

Gene Sequence

<dnaseqindica>403..2091#attctctctctctctctctctccccgaccgcttcccgaatttttctgcctattctttctttgtttcttcttccccctttcgccttccccctctttcctgattccccacctcctccctcgccgccgccgccgccgctgactcccaccgcgaccgcctcccccgccggcgcggtttcggaggaggcccggcgcctgcaggaggaggagggagggagggaaggagggcctggcccgcctccgccgccgctgcctcgtgcggttcccgacgccggccgtactgcgcagcgctcgcccacgccgcgcgcgccgcggtggggcatggtggtgaggtgggagggagggagctgggggtgttgaggcggagggggaggaggaggaggaggaggtgtggttagtgcgacggatggccgcggacgatgccgcgcggagcagcagaaggatggatctgaacctctacctcggcctcccccgcgccccgcgcctgcgccgccccgatctcggctccgacctcgcgctcggcaccccgatgctctcctcctcgccttcctcctcggcggcctcggccgacgcgccgccgctggagacggagccgctccacccgccgtactcaccgccccccgccgagcttgtgcgccccccgacacctctgcccgagccgtacgacccgtcggctcccgaggcgcacccgccctacgtgccgcctcccgtgccgcccccggaggcgatacctgagctcgctgacgaccttgagttcggcttctcccacccgccgcttctgctgcggcccagcgagctgcttgggtgggtagaccggccatcgtcgtcgacggcctcctcttccttccgcccggagcgtgtcgaccgctaccgtccccccgtgatctgcctgaatagccgccagagtcgctgcctccgtccaagacggttcaggtcggaccttccgcctctcggctcggaggcccctgccctggagaacgacgctgcagcacaaccgccaccgcaagagcctatgcaagatacggttgaagagaacaaggtggtcgccgatggcgctatcgtgggtgcctcagaggaggagccagccgaacgtggcaagagcgttgcgatgtttgagtgcaacatctgcttcgagatggcttccgagcctgtggtaacttcgtgtggacatctcttctgctggccttgtttgtaccaatggctgcatgtccactcaactcacaaggagtgccctgtctgcaaaggcgaggtcactgaagggaacatcactccaatttacgggagagggaattcgacttcggacgcggaaaagaaggttgcggaggagggaaatgtatcaggccctacaatcccaccaaggccacatggcaatcggctcgagagcttccggcagaaattccaccatttgcgcccgatttctagaaggcttggcgaggcacatgggatattgtcttcttggaggcgcatacttgatcagcagattatgaatagtgtgagtaggtttgaggggcctcctgaatcaactgtccaggaaatgattgatcatgctcatcatgctagccgtttaggtcgaattactactagaatgagggcaaggaggttgcagagggaagccgaaaactctacatttgttgcttcttctgctgcggagagtgggctgccagcaaacagcacatcggatctgcctaggcgtagctcaagtccattttcctcggaaagaattgatttattgcaacactttgttgaccttgcaagcacggaaagattggcaagcgctgtgagtgaccttagaagaatggttaggccgagcccttatggagcatcaacttcatcaaatccaccaaatccaccaaataccgagctgctgccagttgatgggaatcatgttgccgttgcactagctgcagatcaagcttccaattcaagcaccatggctgtaattcaggaggatgctgcttttactgaaagcacaggggaaccaagtaatgcagggtcttcgagatccctgaggaggagaggaagaaatgatgccttaggttctttggatgtggatggtgtgggactacaccggaacaagagaaggcggctgaactgaggctctcgggctgcaactgctcgtctaattttcttggtttgctgttctcagttagcccttttctctcttcggggacgtatcttctggttgtgatataaaattctctcttctacttgtttattaggtgctgctgagttcattgcaaatgtattccttcggagtcccgacctgtttaatttatatgcttttccacgaggcatgtatactaaggaaagtgagggattgtcatcaggtgaatttactggattgtaaattgcctatgcaaatgtattagatggaaatgatcttgaggtcaaataatacattgacacctgaatctcatttgttgatagcttctgatcttattgaacacataaaactgagctaatacaaagttaaattgatccaatgaatgttgagttcatg</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0470700, RefSeq:Os05g0470700