Os05g0473900

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Revision as of 10:25, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0473900| Description = Phytanoyl-CoA dioxygenase family protein| Version = NM_001062358.1 GI:115464446 GeneID:4339087| Length = 7434 bp| D...")
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Gene Name

Os05g0473900

Description

Phytanoyl-CoA dioxygenase family protein

Version

NM_001062358.1 GI:115464446 GeneID:4339087

Length

7434 bp

Definition

Oryza sativa Japonica Group Os05g0473900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:23319282..23326715

Sequence Coding Region

23319416..23319458,23320086..23320172,23320255..23320399,23320493..23320640,23320722..23320840
,23321445..23321513,23321768..23321828,23322002..23322120,23322276..23322330

Expression

GEO Profiles:Os05g0473900

Genome Context

<gbrowseImage1> name=NC_008398:23319282..23326715 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:23319282..23326715 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgctgccggccggtagcctcaccgacaagcagctccacttcttcgacgccaatgggtaccttgtgctggggtcgttctcgagcgcggaggaggtgaaggcaatgagggaccgcatggcggtgctcatcgacggctttgacggcgctggcgacgtcttctccacaaaggatcatcggcaggtgaagaatgactttttcttcaagagtgcggagaatatctctttcttctttgaggaaaaggcatttggagatgatggatgcttgaaacaggcaaaggaactttcaattaataaagttgggcacgcgttacatgaacttgaccctgtgttcaaaaagttctcttttggagagaatgtttccagcctattctcttctttacgctacaaaagacctgcagttattcaatctatgtacatctttaagcaaccaggcattggtggcgaggtggtgccacaccaggataatacattcctatatacaaaccctccatcatgcacagggttgtggcttgcactcgaagatgcgacaaaaacgaatggttgcctatgggcaattcctggatcacataaaaatggtctgaaaaggcgaatgatcagagatgaaaatgatactcattttgatcatccttcgccaacctatgatctgaaagaatttgtgccattagaagtaaagtcaggtgatttggtggttattcatggagatcttgtacaccagagctttgaaaatctttctctggtgtcaagacatgcactgagcttacatgtaattgataccgaaggatgtgaatggtccaaacaaaactggttacaaaggaaaatcccacctcagccactttatgaaaattag</cdnaseq>

Protein Sequence

<aaseq>MLPAGSLTDKQLHFFDANGYLVLGSFSSAEEVKAMRDRMAVLID GFDGAGDVFSTKDHRQVKNDFFFKSAENISFFFEEKAFGDDGCLKQAKELSINKVGHA LHELDPVFKKFSFGENVSSLFSSLRYKRPAVIQSMYIFKQPGIGGEVVPHQDNTFLYT NPPSCTGLWLALEDATKTNGCLWAIPGSHKNGLKRRMIRDENDTHFDHPSPTYDLKEF VPLEVKSGDLVVIHGDLVHQSFENLSLVSRHALSLHVIDTEGCEWSKQNWLQRKIPPQ PLYEN</aaseq>

Gene Sequence

<dnaseqindica>7258..7300#6544..6630#6317..6461#6076..6223#5876..5994#5203..5271#4888..4948#4596..4714#4386..4440#tcctctcggtcgccgccacagcagccccgatccacgccgctgccgccagacgcgcccttctcctccctcgcacgccgcacgcctcaccctcaccgccaccccgccgccgccgatctacacactcgccgcccccgcctccgctcccacacgcccttctcgcccctcgcgcaccgatctccgctgtagttctccgcgccgcccccgctctccaccgcccgaacacagtcgctcgcctcgccggtctccactccgcctcgtcatccacttccactcgcccaccgccgaaaggtaccgtacagatatcatcctcctccccaatcaaccaaaatcatataggcatcatttatgtttttccatttcccctttttcttcacaagacaataaaaaaatgttaagttcagattacatcttatttccattttgtgatataggttagatgacttgcactacagctacataaattatttctgaacaagtaatttgtgattacatctaatttctgatacatatgattcagtttcttgaaccattgatttttattcttgtcatctcgaattctccatcgattatttgatctgcatgcagttatatatgtgcacgatatgtaaatcaatatatggcaggatcgatgcgtacactcgatcgactatttgcagagacgtgtttgcctcgcacacaagcatcccaatgcaaattaactcagcttatcattttgatctaactatgcattgattatttggggattcctgtttttcctcatgatgttgatgttaaaaataggtcagcgtcactggaatttaggctttcaataaagatctcctaaggcatatcaaggtgactctataaactgcatctgtaggtcctcgataaaatgctgcctactctatctcctgctctttattcctcctattgatgtcaacaggatgtgaggactaccatgtcaacaatgtttccattttgcgcataagatagcatgtgaattgtgcttacatacgagctaagatttgacctgtgatttgtgtgaatgaacgccaattcatctttgagaaacattaaagtgtacctacaaaatccttcaatgcctgactttgtgtttatacaacttggactgaaacaacacttttttaaaaaactgaaatgtcaaacgtttccttgagctatgccgtttcttgataatgtagttctgccatatgaagccgtgcacttttgccatatgaggttaacaaaatgatatcagtgattgcctccatccaaattcctcttttgctcgattggctcatgtgatgttaaggatgaattggacatattgtggtctactgatcagtttggataaaaatatgttggcctactgtttagtttgaaaaaaaaaagttcttctgataatttattattgaaacctaatgatattatatattgtacaacaagctgattctgatatctactgtttgaattattattggtcattctgagtacaggagtagatcttctgaattccaagagggatctttgtagctctcattttctttgtacttttattttgcaagagctaacctatgatctattactgggttcatactgaatctcatcttatcattacggcaatgttgttcatttccaattcttaaacttgctaatttcttttcaaactttggcgacataataggctcacgggcaagggatctccctcacagattcttcaaggaggagggactgcatactcaggtacaccatacatataagcaaactaactgaaatctacacaaaaaattaattttctaacatctggtcgtctggggtagcagcaaattaagagccatgtgaaattagttgtctcctgccgttgttggtatccaggtcaaaagatatagtacaggttcactcacgggctgcacttttctttctctctctctctctctctctctctctcttttgggggcactcatgcgatggctcagtagccatagccactctttttttaggaagaagaaattttgtgtcttgctcctagtcacaaggtaaacacaacattacaagataacaggatgtttaatagccttgggtgcttgcttggttttattattttcaaattttagtagattcatcaactccccaaaaattctgaaaatccccactatttattggatccaagtacttggatcaagagagtgactgaacttttccctaagctggctgtaaaatgcagtacaaactgcacacacttttgttggcatcttggcttctaccaatgcttcttgttggaagtgtttgatgcagaactagagaattttttctttggcattgttgcagattataatcagcaaatatgaatttcttttactggaaatcagcaaatttgaatttaaggtttggtttttcaaaaaaacagttgtcactgtcattccttttaattctacgtgtgaatcttaaatatatcgtattatatgagtgatcgttcatacatatatcttatcttctctttcttttttttccattattgagtattgccgtagcgtggtgccgccgcccatccttgagtatccaccgtcaccgactacccttctctgagcgggtgcaaatcctgccaattgaccccatctcaggtattcacccccaacccatctaaatttcatcttttctgccgctagggcttgcccgtacagggaattatgggtttccttcaataagtgaacaagaatatggtttcagtaaaaaaatgttatcttgcaaagttatttctttgcagctagcagagtaaattcatgcagtcatttatgttttctctagcagaagaataaaatcctacaaactgtaaaataatttataggatgtaaggcatttaatacaaaggaaattcaggtacacatatatggaattgtagattaatggatcgatctaccgtgcatatctcttatttattaacttccgcacatttctacccatcatatatatcttgtacattaactaatgttattggcgctcacatttttttccgccaatgtggcttacatgtttaggttcaaagttcatttatattacaagaaagagagctctggtacaaattaaattcttgtagacctctcatgctgggatatgcctaaacagatcaatgatagtaaataccccctcccccacaaaaccctgttaggcttaattatatttcctcaaatgcttatcattcaatttctgacttctgaagggctgatcctgacagatggctacctggtagctgtagcagtacttaagtacaaaatgttaagagtataatctatttatatatatctattaatttttacgccgtgagctcttcaatctggatatttctgagtttcatctatttctaatattcaaatgactgtagtgggcatccgtagcaaagtatgataactaagtctgcccgacacaacaacgtgattctgagattgacaaggctaaccccatagtcttctacactatttttttttggtgtgttgtttgtcaaaaaataactatgtgatctggtagatgcacttaatctgaagttatgtgaacttaatctgaagttgtgcccaaatactgtgcaatagtgccgatacaggaaactcttttagtaaatagaaccattagctgcttcaatttggaggagtacatgtactttcctattatatgctatctagcttgacaaaagactagatctgctatctaaattactggaacatatgcagataacaactttttctccacacatccgcataataatttgtgcaccttgcaggttgtccaaaaaaaaaaagagttggagaaacatatagatcgagtcttgaataagagaaacattaactagggaattcatttagttttctgactgatgtattcttcggtgggagggaataaaattaaacaagtatatattgacgtacacacatattagccattgatattggggtatgcacatacacacataatggccattgatattggtttatgcacatacacacataatagccatgacagtatcactcactatcaactgcatttgaagtttaatttcagaattatctcatcttatcattacggcgatgttggtcatttccaactcttaagcttgctaaataaaatgaaaaaaaaaacttatcggtacggatcaaaggtctccaatataaggcccagcttcttgctaggccgcttggcctggcctatacaaaacaaaagcctaagacgctcccaccctaaaaagccgcgttcccttcaagaaagcgtaaaagtttgcggctgaaactccatgctcgcttttgcttcaggagaacgtagagccatgcggttccgtgtagtattcctgtagtccactcctgcaatccacccgccctctgttttgtcaaacttctcatctccccttcccttccgccgccatgctgccggccggtagcctcaccgacaagcagctccacttcttcgacgccaatggtaagcgccacccaccgctcattccccttccctccttctccgcaccatctggtcagtgtcgctcccagcaatcggaggcagcgaattgcccagctagaactatgtacgaggtgacctaaatccttgtcgcgcgtgggggctctcgttggtcgcagggtaccttgtgctggggtcgttctcgagcgcggaggaggtgaaggcaatgagggaccgcatggcggtgctcatcgacggctttgacggcgctggcgacgtcttctccacaaaggatcatgtatgtctcgatgggggaagatattattttcccctttactgaatagctttctctgtatgcttgtcgtatgtacattatccacaggagtaatttctaatctcacttctagatttgattgccagtggcacacgcatcacggtttgaacttagtgttacattgtttcccaatgcagcggcaggtgaagaatgactttttcttcaagagtgcggagaatatctctttcttctttgagggtaagtgaatttcatctcttggagttgtggagttaatattcagtaacattcatcagttatgctatctgaacaaggaactggttggtagttaaaaaaaaacaagaagataatgtgtagttagtagttacagacctattattgtcgaactgttcttctggttctgttgttgatttacaatggcagcatgtggaggtttacttggatttggatagtgatttatattttatatattttcctgtttcaattactcacagaaaaggcatttggagatgatggatgcttgaaacaggcaaaggaactttcaattaataaagttgggcacggtcagtatgccaagtagaaattggttatacatgtgtgtagtttgtagaatgattgattgagtcttgcaagattattgtgttgttcatgttgcatgggttggaaccagatgccacttgctatacaagttgtaaattgtctagcaggatgagttgttgtgagaaacagtcggggattttcttacttaaatatagaagtcgaaaattgtaatagacttctctgattgctcaaacaaatatttacattacatctaggccaaaagataacaaagctacatcctaaacaagattgcattcgatccagaggtgctggtggaatagtcttataaccactcatgtagcacttttgtggataatactgttcttctgaacataaattttattgttcaaccttgctatttctgctgtttgcatttccattaatctgggttaagacaaattttcttgagtttggtttatttttgaatttgcctgtttggttgctattttctagttaacgttagttagtattttccatgctttgaaaagcttatattgtttgtatacttgtatatttataacaatatatcttgaggtattgccattcactgctcagtaatttttgcagcgttacatgaacttgaccctgtgttcaaaaagttctcttttggagagaatgtttccagcctattctcttctttacgctacaaaagacctgcagttattcaatctatgtacatctttaaggtatcttgatcagtctctagtttcttgttggcattgactacaacttttattccttattgggttaatttatccacaactcagcaaccaggcattggtggcgaggtggtgccacaccaggataatacattcctatatacaaaccctccatcatgcacagggttgtggcttgcactcgaagatgcgacaaaaacgaatggttgcctatgggcaattcctggatcacataaaagtagattttcgtaccaaattatttcatgtcaagaatcctcttgtggttatctgagcttctgatttgattatcatttgcaatgctttgcaccagatggtctgaaaaggcgaatgatcagagatgaaaatgatactcattttgatcatccttcgccaacctatgatctgaaagaatttgtgccattagaagtaaagtcaggtgatttggtggttattcatggagatcttgtacaccagaggtgaagttaccctgttatattgcatagcttgcaatcaactgcttcattttttttactaatatgttttaactttttttgacagctttgaaaatctttctctggtgtcaagacatgcactgagcttacatgtaattgataccgaaggatgtgaatggtccaaacaaaactggttagtttattttaacacttttggagaattcaaaagttaaaattcttatttgctctaggtggtctttgcatcacttactgtccacagtagaaatctagaattgcctagaaacaagctattctacttccaagcttgtcctaaattgctcaaaccaagctacttgctttagactgtataatcttatactgcataatcttgtacttgatactgtatgatagttttggcgtagcctgtaacacaggacacatattggttacctgtacctgtatatgttgaaacaaggtattgtgccgctgtttgtatttttacgaatgggaatgatgttttactttatctttcctgtcaatcacttacgaatgggaatgatgttttgctttatctttcctgtcaatcacttagaaactccgaagacagaaatttattggtgtccttgtttacgtcactgttagcagaaaaattgtcgataacaagaactccatcttaaacttacctgcttgctctcaattttgaagtggatactacaccagtacacctcataaaacatcgtaaaattatagctatcgatgtttcataaacttttccacctttatttaaattttgctaacaggcttttttatgcttgctcaggttacaaaggaaaatcccacctcagccactttatgaaaattagtacaagcagttacctatgtgtcaaataaacgagtgatgacctagaagcaatggtcagacaatgtaaataccttgctactctgttttcatggatgttttttatggcaataaatttggtgtacgatgttgagtagc</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0473900, RefSeq:Os05g0473900