Os05g0519900

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Revision as of 10:29, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0519900| Description = Similar to Itm1 protein (Fragment)| Version = NM_001062603.1 GI:115464936 GeneID:4339345| Length = 5919 bp| Definit...")
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Gene Name

Os05g0519900

Description

Similar to Itm1 protein (Fragment)

Version

NM_001062603.1 GI:115464936 GeneID:4339345

Length

5919 bp

Definition

Oryza sativa Japonica Group Os05g0519900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:25872458..25878376

Sequence Coding Region

25872784..25872840,25872933..25873022,25873127..25873214,25873302..25873381,25873513..25873610
,25873691..25873877,25873948..25874091,25874178..25874429,25874530..25874661
,25874752..25874832,25874913..25875033,25875475..25875570,25875740..25875843
,25876026..25876112,25876235..25876348,25876416..25876475,25876552..25876647
,25876861..25876911,25877002..25877107,25877187..25877258,25877662..25877717
,25877991..25878053,25878181..25878309

Expression

GEO Profiles:Os05g0519900

Genome Context

<gbrowseImage1> name=NC_008398:25872458..25878376 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:25872458..25878376 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggagcccgagtcctccacggccgcggccggcggcagccgcctccgcaacgcctgcgggggcgtgctgtgcgccttcaccctcctcctcatcggcgtcctcgcgttctcgatccgcctcttctccgtgattaagtacgagagcgtgatccacgagttcgacccctacttcaacttccgcgtcactcagtttttgtcgaagaatgggatctacgagttctggaactggtttgatgacaggacatggtatccccttggccgtgtgattggcggcactgtgtatcctggtttgacattgacagctggaaccatttggtggttgctaaattctctaaacattccgttgtcagtggagactgtttgtgtgttcactgctccaatattctcagcaaacgcttcctgggctacttaccttttaacaaaggaagccaaaggcactggggctggattgatggcagcagctattttggcaatggttccctcatacatctcaagatccgttgcaggaagctatgataatgaagccgtagcaatatttgctttgatattcacattttatctatatgtaaagacactgaacacaggatcactcttttatgcaacgctcaatgctctctcatatttctacatggtctgttcttggggaggttacacattcatcatcaaccttattccaattcatgtactgttgtgcattgtcactggtcgttattcttcacggctttacattgcttatgctccccttgttatactgggaacacttctggcagccttagtacccgtggttggttttaatgcagtgatgacgtctgagcactttgcatcatttctggtgttcataatccttcatgtggttgctcttgtgtattacataaaaggacttctaactcccaggctgttcaaagtagctatgactcttgtcataacagttggcttggctgtttgttttgcagtaatagctatactcatcgctttggtggcatctagccccacaaaaggatggagtgggcgcagtttgagtctacttgatccaacctatgcaagcaagtacatccctattattgctagtgtcagcgaacatcaaccccctacctggccctcctatttcatggatatcaacgtgttggccttcttgattcctgctgggatcatttcatgcttcttgcctttatctgatgcaagctccttcgtggtcttgtacttggtcaccgcagtatatttttctggagtaatggtgcggcttatgcttgtccttgctcctgctgcgtgcattttatctggaatcgctctttctgaggctttcgacgtcctcacaagatccgttaaatatcagctatcaaaattatttgatgacagccctgctgcttcaggggatagtagtgcagagagttctagcgctagtactgtctccacaaattcagcaaaaaatgagactagacctgaaaaaactgaaacagccccaaaggaaaaaccatcaaagaaaaaccggaagaaggaaaaggaagtggctgaaagtgttcctgtaaagcctaaaaaggaaaagaagcttttggtacttcctatggaggcatctgttttgggcattttgttgctgatcgtgttaggtggtttctatgtggtccattgtgtgtgggcagcagctgaggcgtactcagctccttcaattgtgttgacttctcgttcgcgtgatggattgcatgtttttgatgatttccgtgaagcctatgcatggctcagccataacacagatgttgatgacaaggttgcgtcctggtgggattatggttatcaaacaactgcaatggccaacaggactgtaattgtagacaataatacttggaataatacccacatagcaacagttggaacagcgatgtcatctccagaaaaagcagcttgggagatcttcaattctttagatgtcaaatatgtccttgttgtatttggaggtcttgttggctaccctagcgatgatattaacaagttcctttggatggttcgcataggaggtggtgtattccctcacatcaaggaacctgattatcttagggatggtaactatcgtgttgatgctcaaggcaccccaactatgctgaattgcctcatgtacaagctttgctattacaggttcgttgagaccgatggcaaaggttttgatagagtaagaggatatgaaataggaaagaagcatttcaaactaacacattttgaggaggttttcacaacccaccactggatggtccgtatatataaactgaaacctcaaaagaatagggttcggggcaagttgaagaagttgaaatctggctccaaagctagctcaacgaatgcggcgggccgaaagaagaacccatggcaataa</cdnaseq>

Protein Sequence

<aaseq>MAEPESSTAAAGGSRLRNACGGVLCAFTLLLIGVLAFSIRLFSV IKYESVIHEFDPYFNFRVTQFLSKNGIYEFWNWFDDRTWYPLGRVIGGTVYPGLTLTA GTIWWLLNSLNIPLSVETVCVFTAPIFSANASWATYLLTKEAKGTGAGLMAAAILAMV PSYISRSVAGSYDNEAVAIFALIFTFYLYVKTLNTGSLFYATLNALSYFYMVCSWGGY TFIINLIPIHVLLCIVTGRYSSRLYIAYAPLVILGTLLAALVPVVGFNAVMTSEHFAS FLVFIILHVVALVYYIKGLLTPRLFKVAMTLVITVGLAVCFAVIAILIALVASSPTKG WSGRSLSLLDPTYASKYIPIIASVSEHQPPTWPSYFMDINVLAFLIPAGIISCFLPLS DASSFVVLYLVTAVYFSGVMVRLMLVLAPAACILSGIALSEAFDVLTRSVKYQLSKLF DDSPAASGDSSAESSSASTVSTNSAKNETRPEKTETAPKEKPSKKNRKKEKEVAESVP VKPKKEKKLLVLPMEASVLGILLLIVLGGFYVVHCVWAAAEAYSAPSIVLTSRSRDGL HVFDDFREAYAWLSHNTDVDDKVASWWDYGYQTTAMANRTVIVDNNTWNNTHIATVGT AMSSPEKAAWEIFNSLDVKYVLVVFGGLVGYPSDDINKFLWMVRIGGGVFPHIKEPDY LRDGNYRVDAQGTPTMLNCLMYKLCYYRFVETDGKGFDRVRGYEIGKKHFKLTHFEEV FTTHHWMVRIYKLKPQKNRVRGKLKKLKSGSKASSTNAAGRKKNPWQ</aaseq>

Gene Sequence

<dnaseqindica>5537..5593#5355..5444#5163..5250#4996..5075#4767..4864#4500..4686#4286..4429#3948..4199#3716..3847#3545..3625#3344..3464#2807..2902#2534..2637#2265..2351#2029..2142#1902..1961#1730..1825#1466..1516#1270..1375#1119..1190#660..715#324..386#68..196#gatttcgcgaggtcttcgcttcgtctccgccccacacccccaaacccacagccacgacgcggccgcaatggcggagcccgagtcctccacggccgcggccggcggcagccgcctccgcaacgcctgcgggggcgtgctgtgcgccttcaccctcctcctcatcggcgtcctcgcgttctcgatccgcctcttctccgtaagatctgatccgccccctccccccactccacctcgcgcggcggccagatccggctcgccgttcgtctcgcgtttcggaattgtgcattcttaatcggccccttcgttttttttttgtgcctcaggtgattaagtacgagagcgtgatccacgagttcgacccctacttcaacttccgcgtcactcaggttggattgcggggagcttccatcttgtgtgttattatttttgtggagtatgcggatttaaggaatttagctcgaatcataggggactgcaatgttgtgttgatttcagagtgttggtgtcagtgggttttgggttttgcaaagtgattttggagtatattttcgtttactactggatgattagtggaagtatggagcaacagatggttacatgcttgctggaatcagttgtggattacatcagatctaaaatttccatcttacctattacagtttttgtcgaagaatgggatctacgagttctggaactggtttgatgacaggacatggtaagagccttacgtcagatgaataatttaatattccctccatctacttttgatagtcatatttcatcttggcacaatgaccaaggataagtaattctacttatcatccatttaaacatgctactagttattccttgtaaacaagcgattcattaatatttacatttctcgatgcccatgtagccaatcttgtgtggaagaatgtagagtcacgcattaaatcctagaaagtcattaagatgataggtgattgaattgaaatatgcctatcaaaagtaaatttttcagatttgggaatatgcctatcaaaagtagatggagggagtattgtgtaatcatgatgtaaaatagaatgtgtaatacgcctacttggctgattcccttgctgttgcttctgttttaggtatccccttggccgtgtgattggcggcactgtgtatcctggtttgacattgacagctggaaccatttggtggtatgttatcaaaggaaagcacttgtctgttcctcattaatgctgtggatgtgcctaaaatatttgattggttttgcaggttgctaaattctctaaacattccgttgtcagtggagactgtttgtgtgttcactgctccaatattctcagcaaacgcttcctgggctacttaccttttaacaaaggtgttattttttcctctcccggaagcactagttctcacactattggtactcatacaaataattgtgcttatttcttttaaccttccataggaagccaaaggcactggggctggattgatggcagcagctattttggcaatggtaatctgcactatggatttttctactaggctttttttttatcatgaaagattactatagtattttgactcgattatgatccatatattttcttttccacattacacttgtcatagtaataggaagctatgataatgaagccgtagcaatactgaatccacattccacattacacttcttttccacactcaaatcacacatcatttattacaggttccctcatacatctcaagatccgttgcaggaagctatgataatgaagccgtagcaatatttgctttgatattcacattttatctatatgtaaaggtaatggtgcatgggttgtttttgttgcctctttaacatagcgttatgaactgacctgttctcaaatgatttgcagacactgaacacaggatcactcttttatgcaacgctcaatgctctctcatatttctacatggtaatatctgataatttgaacccatgttttccaatgtcctttataatcaagcaacaaccttgtgcaggtctgttcttggggaggttacacattcatcatcaaccttattccaattcatgtactgttgtgcattgtcactggtcgttattcttcacggctttacattgcttatgctccccttgtaagtgcataacatcatccttttctttcttcattttgaacaaacaaaataaaaggagttaaacgtttcagtgatactgtttgtctggaaactgacctaataagataattatcattttgcaggttatactgggaacacttctggcagccttagtacccgtggttggttttaatgcagtgatgacgtctgagcactttgcatcatttctggtatatacattcattggcttatgcacaccttttcttccttgtggaattttcttcattcagatcatttacccactttgccctattagaataaataaccagtgaactttatctcctaacttcatcggagaaaattgctataagccaccaataatttcattgataatagtatactttaattgcaggtgttcataatccttcatgtggttgctcttgtgtattacataaaaggacttctaactcccaggctgttcaaagtagctatgactcttgtcataacagttggcttgtaagtctcttgctttttttattgtcaggtgcatgagaaactagacattgagcttgtttattccttggaccaataatcaccatctatccatcagaatttaaacatttaatttctttatttgagatggtatcttaacccacatatgctaatggcaacatccttcctccagggctgtttgttttgcagtaatagctatactcatcgctttggtggcatctagccccacaaaaggatggagtgggcgcagtttgagtctacttgatccgtaagtttttttaccatggaaaataaatattatgttattttgctgtaccgggctgggaatcattacatgaaataatacttaattttgaccagctgaaataatacaaactatgcccctttttttatgcttactgttttagacaaggaaagcagtctttctgatgcatgattttctgaatggagtatatctcaatgtcctattggtgtttattttccgtacgggctgggaaccattacatgaaataatacttaattttgaccggctgaaataataaaaacaatgcccattttttatgcttactgttttagacaaatgaaagcaagtctttctgatgcatgattttctgaatggagtatatcacaatgtcatattggagtttattttcttctggttctctttctgcatcataacttcacgttttttcctgctttttttttacagaacctatgcaagcaagtacatccctattattgctagtgtcagcgaacatcaaccccctacctggccctcctatttcatggatatcaacgtgttggccttcttgattcctgctgggatcattgtaagcagtctacattttcaatccgaattgaattagcataagtatttgttcttactagttaatattgacattgtcaacagtcatgcttcttgcctttatctgatgcaagctccttcgtggtcttgtacttggtcaccgcagtatatttttctggagtaatggtaagaatatgtgtaatgtaaaagcatctataaagcaatgtttatctagtatttatttattaacttttctttacatatattctcttttaggtgcggcttatgcttgtccttgctcctgctgcgtgcattttatctggaatcgctctttctgaggctttcgacgtcctcacaagatccgttaaatatcagctatcaaaattatttgatgacagccctgctgctgtacggttgctttcttcattgtttttctttactctgttaataattacctggcttcatccttaacaaacttattgacaacttatttcttctgaaacttaagtcaggggatagtagtgcagagagttctagcgctagtactgtctccacaaattcagcaaaaaatgagactagacctgaaaaaactgaaacagccccaaaggaaaaaccatcaaagaaaaaccggaagaaggaaaaggaagtggctgaaagtgttcctgtaaagcctaaaaaggaaaagaagcttttggtacttcctatggaggcatctgttttgggcattttgttgctgatcgtgttaggtggtttctatgtggtaagttaaatattcttagtcttacagaaagaacagtcataccataagtgatgtctggatgtatcttaggagatgcatttttgtaggtccattgtgtgtgggcagcagctgaggcgtactcagctccttcaattgtgttgacttctcgttcgcgtgatggattgcatgtttttgatgatttccgtgaagcctatgcatggctcagccataacacagatgttgatgacaaggtacgctcatcccttgccctctatttctaagtgctctgtgtttttctgacagtaagacggtccactgcaggttgcgtcctggtgggattatggttatcaaacaactgcaatggccaacaggactgtaattgtagacaataatacttggaataatacccacatagcaacagttggaacagcgatgtcatctccagaaaaagcagcttgggagatcttcaattctttagatgtcaaatatgtccttgttgtatttggaggttgatgctttgtggacttctttagaacaaatcaataactagtggccccagatccctgacgttgggtgtttactttacaggtcttgttggctaccctagcgatgatattaacaagttcctttggatggttcgcataggaggtggtgtattccctcacatcaaggaacctgattatcttgtgagttgtgaatctttttagggatggtgccttacacatcattttggtgggcataaggaagaatagaaatagtgaaacaaatatatgagcttgattcactattctgatttctcatgttattttgttgccagagggatggtaactatcgtgttgatgctcaaggcaccccaactatgctgaattgcctcatgtacaagctttgctattacaggtttgacaaacagaattcaatagataacgtttagttgtcatcaatatttttttttttacatttggctgttttccttgtttcctccaggttcgttgagaccgatggcaaaggttttgatagagtaagaggatatgaaataggaaagaagcatttcaaactaacacattttgaggaggtaatgcgatgttactcctctttccaattagtcgttttattttcatctttttctaactcaatcgtttgcttggcgttttcctatcgttcttttaaatcataaaggttttcacaacccaccactggatggtccgtatatataaactgaaacctcaaaagaatagggttcggggcaagttgaagaagttgaaatctgtaagtctggcaaatttttaattttcacacccctattctgataactttgaagtttgaacacatttaaccttttttcgcttgcttatccgcagggctccaaagctagctcaacgaatgcggcgggccgaaagaagaacccatggcaataaaaatgagtaaatgcgaaaagcgacgtggctgcttggaatttgcttttgctagctcaactgcaactaagctcaaaagaactagaaaaccacaggcctaggattagagattgctgcgttattgcactcagtatttgacacccctaatatgtttttgggaccagcaggagtgctgaagaaatttttgatagactgctctaagctttttggccccattgtttgcaacacgcggtttagtgtcttttatactccttttgcactgaagatgtttaggcggacgtacaatggaagtttatttagaaaaatgagaacgtggctatttattgttt</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0519900, RefSeq:Os05g0519900