Os05g0539900

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Revision as of 10:31, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0539900| Description = Protein of unknown function DUF1230 family protein| Version = NM_001062712.1 GI:115465154 GeneID:4339462| Length = 1...")
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Gene Name

Os05g0539900

Description

Protein of unknown function DUF1230 family protein

Version

NM_001062712.1 GI:115465154 GeneID:4339462

Length

1567 bp

Definition

Oryza sativa Japonica Group Os05g0539900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:26881975..26883541

Sequence Coding Region

26882094..26882577,26882663..26882709

Expression

GEO Profiles:Os05g0539900

Genome Context

<gbrowseImage1> name=NC_008398:26881975..26883541 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:26881975..26883541 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggccgccgctcccctctcccctcctcctcccctccacgcgcgcctcctcctcctcccgcctctcctcccgacgatggccgggggctcccgcggacggcggcgggggcgggggcgccgccggttcgcggtcccgccgtcgcggaacgggagctcgtcgcaggggacggagtggtgccccgtgccgccggagcagctgccggtgaacgagtacgagtcgctggcggcgtcgctgcccttctcgtgggcggcgggggacctcacggtctactgctcccgcctcgcgctcaccggcgccgccttcgcgctcttcgtcggcctccccgtcgcgtcgttcggcggccgcggaggggccggcggcgacgccgtgcacctcgcgctcggggccaccgggtccgggatactggccgtcacgctcgccgtggtgcggatgtacctcgggtgggcgtacgtcggcaaccgcctcctcagcgccaccgtggagtatgaggaaacgggatggtacgacgggcaggtgagatactacgcttga</cdnaseq>

Protein Sequence

<aaseq>MAAAPLSPPPPLHARLLLLPPLLPTMAGGSRGRRRGRGRRRFAV PPSRNGSSSQGTEWCPVPPEQLPVNEYESLAASLPFSWAAGDLTVYCSRLALTGAAFA LFVGLPVASFGGRGGAGGDAVHLALGATGSGILAVTLAVVRMYLGWAYVGNRLLSATV EYEETGWYDGQVRYYA</aaseq>

Gene Sequence

<dnaseqindica>120..603#689..735#tgtgcagtgagcttactgaagtctgcaacacgaggcagagccacgcacgcaacgaaacccgaagccgttgcttcgcggctctcgcaaccctcactctcctcgccttcccttccacggacatggccgccgctcccctctcccctcctcctcccctccacgcgcgcctcctcctcctcccgcctctcctcccgacgatggccgggggctcccgcggacggcggcgggggcgggggcgccgccggttcgcggtcccgccgtcgcggaacgggagctcgtcgcaggggacggagtggtgccccgtgccgccggagcagctgccggtgaacgagtacgagtcgctggcggcgtcgctgcccttctcgtgggcggcgggggacctcacggtctactgctcccgcctcgcgctcaccggcgccgccttcgcgctcttcgtcggcctccccgtcgcgtcgttcggcggccgcggaggggccggcggcgacgccgtgcacctcgcgctcggggccaccgggtccgggatactggccgtcacgctcgccgtggtgcggatgtacctcgggtgggcgtacgtcggcaaccgcctcctcagcgccaccgtggagtgtgaggaaaccccaaattactatatctcctttctttcgtttgtttccatgtttgcggatctgatttcagtgcctgattttcgcagatgaggaaacgggatggtacgacgggcaggtgagatactacgcttgatcctgtcattgactcatttctgtgattctagtgcagtactaacatggagtttatgcttacactggtatttttgggatcaagtagagaaagatttgacaggatatatatgccttgaccttgatctgatacttggcattgatttggtacttgctggacaatttggcatgctatttttcgtggaacatttggtttgccacaggacaagatcgctcatgttcctttacaacttacaactacaataactgggatatctttgacagcacgcttatttagctctggcttaacaagattttgtggctttagactttactgctttagctaaacaatagtggaataaaaaccaactttcctttgctttcttaaaagcagggcttcagtgccttttgtctcaaaaaaggggaaaatcaacagggatcactgaatcagaaatatatgcagtgccaccaaaagaacactcccaaaagtcactgccttgcttatcattgtactcaatagtcaatactgttgatgctcaagtcataccaattcttattagatatcacaccaataaccaactgctgaagtattagatttgcagctatatgcaatttcatagaattctcagattgttagcttgttatcaaggtgattatgaaattcagagataaaaatgacatgcatttttttaatcctaattttccccttgtcaccaagataaatggggttttagatcacaacaacctttcataataacatacccacagatatattaaattataaactgcagtagatctcctatattcctgtaaactcttaaaatacctttcttgttcactgagcagcaacgcgtccc</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0539900, RefSeq:Os05g0539900