Os05g0557200

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Revision as of 10:33, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0557200| Description = Armadillo-like helical domain containing protein| Version = NM_001062822.1 GI:115465374 GeneID:4339575| Length = 530...")
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Gene Name

Os05g0557200

Description

Armadillo-like helical domain containing protein

Version

NM_001062822.1 GI:115465374 GeneID:4339575

Length

5304 bp

Definition

Oryza sativa Japonica Group Os05g0557200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:27793978..27799281

Sequence Coding Region

27794095..27794167,27794661..27794727,27794898..27795006,27795201..27795263,27795364..27795464
,27795569..27795635,27795727..27795798,27795903..27796064,27796697..27796770
,27796849..27796946,27797377..27797484,27797622..27797719,27797813..27797950
,27798056..27798103,27798339..27798453,27798797..27798894,27798984..27799073

Expression

GEO Profiles:Os05g0557200

Genome Context

<gbrowseImage1> name=NC_008398:27793978..27799281 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:27793978..27799281 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaggcgccggcgatggagcccggcgagatggaagcgatgctccgggcggcagcggagttcgcgtcctacccaggagcgcatggtgatgacaccgtgaggcagttcctggagcaataccctctgcccaagctgttaggtgcattgcagagtgaggctgatgtacctgggatggatgaaactattgccgcatgcttggacaaagtattttcttcgagatatggagcatcatttctgccaagctatggtgcatttattcaagctggattgcttgcaaactcgaagaataccagacaactagcctgcaaagctgtgatacatcttcttgataaggctggagatagtgctgttgttgtggacacatttgttcagcacaatctatatcctcttctgatgaattgtttaactgagggagatgaggagatttcagcaatttctctggatggcataaaacgtttagcacaaattcctaaaggcattgagatcatatttccaccaaatggtcaagggtctgtgcaactccacaaagtggcagctcagtcatcgtccatggcacgaattcgcattctatcactgatagctaagctctttgctgtgtcaacctatactgctactgccatttacgactcaaatcttctcagcttatttgaggatgagataaaagatagaagagacatgcttaaaaccctgagtgcactagaggtcctctatgagctcgtggaacaccctcacagcaatatcttcttgctgaagactaatttacttcaactcatggttgatgtgatcaacgattcatcggctgattctattgtacggtcaagggcaacattgattagtgggaggcttctttcttcagctgatgctttcacgacaatagatcgaaactgtgttgcaaatctgcttctagctatagacaaattattgaagatggaagaaagtcaaaatacagatgaaactgagagtgcattggaggccttaggcctgattggtacaacatctgctggagcatgtttgttgctcacagattcatcaaatgctgccagacatgtggtagaggcatcctttggtcggcagggtagaggtaaacagctggctgctttgcatgcatttggaagcatatctggtgttgatcggcaggaagaccaaataaaactggataatcaagcggaagaacgcctgaagcgttttgtctataccacagcaagaaacagtccaaaactgacaccttcggctcttcttctgtcggtgttacaacaagatccagacataaggataactggttacagagtaatatctggccttgttgccagagaatggtgcctaatggaaatttgttcaaagttggacataatcaaccttgttacagatcccaaaatggagatgacaaaacttggcatggaagcacggcatgattgttgtctggcgatcagcaaggcattatcatcatcacatcttcttcatgaaccaagcctttctgaactcattggaaagttgaatgaagcggttaaaaggggtccttatctttctgagaggaagcgtgtggagccacagccggtggttgtcccggcagagaggttttaa</cdnaseq>

Protein Sequence

<aaseq>MEAPAMEPGEMEAMLRAAAEFASYPGAHGDDTVRQFLEQYPLPK LLGALQSEADVPGMDETIAACLDKVFSSRYGASFLPSYGAFIQAGLLANSKNTRQLAC KAVIHLLDKAGDSAVVVDTFVQHNLYPLLMNCLTEGDEEISAISLDGIKRLAQIPKGI EIIFPPNGQGSVQLHKVAAQSSSMARIRILSLIAKLFAVSTYTATAIYDSNLLSLFED EIKDRRDMLKTLSALEVLYELVEHPHSNIFLLKTNLLQLMVDVINDSSADSIVRSRAT LISGRLLSSADAFTTIDRNCVANLLLAIDKLLKMEESQNTDETESALEALGLIGTTSA GACLLLTDSSNAARHVVEASFGRQGRGKQLAALHAFGSISGVDRQEDQIKLDNQAEER LKRFVYTTARNSPKLTPSALLLSVLQQDPDIRITGYRVISGLVAREWCLMEICSKLDI INLVTDPKMEMTKLGMEARHDCCLAISKALSSSHLLHEPSLSELIGKLNEAVKRGPYL SERKRVEPQPVVVPAERF</aaseq>

Gene Sequence

<dnaseqindica>118..190#684..750#921..1029#1224..1286#1387..1487#1592..1658#1750..1821#1926..2087#2720..2793#2872..2969#3400..3507#3645..3742#3836..3973#4079..4126#4362..4476#4820..4917#5007..5096#actacaagcggagttccgagcagagcggctgcctctgcctttgccttgccagtcagtgctcgagttcgtctcgctctccgcatccgcaactagggtttccccccaagcaagtcgcagatggaggcgccggcgatggagcccggcgagatggaagcgatgctccgggcggcagcggagttcgcgtcctacccaggcaatggcccctcctcgtcctcctccatctcatctggctcagggcgaatcattttttggcccgcactagcttctagctcacgagttactctttttttttttttttttggggggggggggggggagatcaggggatggggttttgggttgcgcgtaagagtcgatgggattagcttgctttgcatgttgctaggtgggagcctgcttagtaggtgttgcatatcaccgcaaacatctgattccgcactcctgatcgcgcttgctttcagtaacttttgtaactcatgcgttagggttggattatattatggcttgctggttttgcaatgttgctgtaaatagggttcctctcttcagtccatttgtgaatgactggtttttttcccctgctaattactcaggtggcgcgtattaaaattttcaattggacttgtttgcatttggagaaggcacaatttgtttaggcactcactgcattacttcctttgtggcaggagcgcatggtgatgacaccgtgaggcagttcctggagcaataccctctgcccaagctgttagggtaaactgcttgttcctcaaaatgagttcatgaaattacagccgacctgttcaagtcatctatttacatctctagtccccacaaatgctatggtgcttatactagtttgttgtgcaaaataatgaattagttatcgagtggtcgttttaattttcgtcttggtcctgtagtgcattgcagagtgaggctgatgtacctgggatggatgaaactattgccgcatgcttggacaaagtattttcttcgagatatggagcatcatttctgccaagctatggtgtatgtgtgaaatagtctctttaatttttaaacctggcacatacacctgttaaccttggtcaattgcttgtgcttctttgaagcatattccaaaatgaccaactacattattctgtttctttttattccttaagtaatctataactatatacatctgtctacctgaagttcaacttttcaatttgataattcaggcatttattcaagctggattgcttgcaaactcgaagaataccagacaactagcctgcaaagctgtatgtcctattgtccctgaatatatataaatattttgactgctgagaattcccgttgaaataaacgttttcacataattcctttcaaattctttactaggtgatacatcttcttgataaggctggagatagtgctgttgttgtggacacatttgttcagcacaatctatatcctcttctgatgaattgtttaactgaggggtaattattttcgacatcacaaactacatatagcaagttctgttggttggatgacacgtgttcttggagatatacctgttattaattctgtttgccttttgtagagatgaggagatttcagcaatttctctggatggcataaaacgtttagcacaaattcctaaaggcattgtgagtataatcatgtttttgaattgttgagtatatattcctttagtgcattgtggttatcactgtggctaatttttgctttggcttttaggagatcatatttccaccaaatggtcaagggtctgtgcaactccacaaagtggcagctcagtcatcgtccatggtatgacatcttgattctgttcttgtcaaagtttttttttttctgaatttatcaatacacatgtttaagttgtgttaatgttccttgcttcctcttctttgtaggcacgaattcgcattctatcactgatagctaagctctttgctgtgtcaacctatactgctactgccatttacgactcaaatcttctcagcttatttgaggatgagataaaagatagaagagacatgcttaaaaccctgagtgcactagaggtcctctatgaggtaacaatatactagtattttttgtgcagtactccagtttgactttcatggcttgctaaatgtttggcactttggcttgcatccctcagttttccttgatacatgatagtttccatcaacttggtttctaagtagataggcccttttgcttttagttactgaaaaagctttacaattgaaagaaagtacttatggcaaattggcttatttctggctttacgtcaatagtgtggtgggattcttcttttctcttcatttgcaagagccttgcataagttgcattgatagttgtaattcatcatatgttgaatgtctggatgaaaccagaccaatgccattagatctttatactaaatgtacttgtaatttgactaatcattggttataatctacgaggtactaacattttaaaataaaaaaaatatgccttataaaaatcaacagagggagtacctagttaagctgcagcaaaatcctcagaatagaagcagtgaggagaatatggctttggatgcctttttttcccccttccattttggtgatcaagatcaatgacttggagattctgttatatctaagggtagctatatgtttcgttgttgcagctaataatgcattgtgttgtaatgcagctcgtggaacaccctcacagcaatatcttcttgctgaagactaatttacttcaactcatggttgatgtgatcaagtattcccctaatgcttctgtaactatgttttgtcttgcaattttcatccatttgattttttttttggtcatgtatagcgattcatcggctgattctattgtacggtcaagggcaacattgattagtgggaggcttctttcttcagctgatgctttcacgacaatagatcgaaactgtaagcaggtttatttgcagctatccaacttctattctaccagatgtgctaaaaatctttgcagctatggaatttctattctaccagatgtgctaaaatctttccttttgagcattgaagattttcgaatccacagttttttaatcgctatgatttatactgtttcctccatttatgacaacttcgcatcataatttttttgtgggggtttctttgaattataatgaaactgtactaaatggtatgtacattagttgttaacagatctttcatgtgaagtgtcgaggaatgctatttgataacctatttattggattgttcttggcacttttactaggatcatattcgtgttaatgctatcaggtatttacagtatttttttttaaaaaaaattacagataagtttcttatcaagatttgttcatgttaggtgttgcaaatctgcttctagctatagacaaattattgaagatggaagaaagtcaaaatacagatgaaactgagagtgcattggaggccttaggcctgattggtacaagtaagtttatgcgtccattacccttctgttatacaataatgaaatattcatcaattattggggtggggtatttactagaaacttatgtcatcatcctaactaagcgtactgtttatttggctctattggtataacagcatctgctggagcatgtttgttgctcacagattcatcaaatgctgccagacatgtggtagaggcatcctttggtcggcagggtagaggtaaacagctggtaagttgcctgcctagtttattctattgccactcttttcaatcaagttaccagaaatcggtcctctaatgtgagattgttttatatgttcaggctgctttgcatgcatttggaagcatatctggtgttgatcggcaggaagaccaaataaaactggataatcaagcggaagaacgcctgaagcgttttgtctataccacagcaagaaacagtccaaaactgacaccttcggttagtagtaactttatatttttttccattccatgtatctttactttatagttttcctttcttattaggtttgtttatatcggttcttgcttcatatttttacaggctcttcttctgtcggtgttacaacaagatccagacataaggataactgtaagcagcacatgcttgttgaagttagaacctgtttggaacacaggaagcatcccagatttcagctgggacttaactatttcccgtggaactcctgtattccaagcagttctcttaacttattttatactgaatatctacttctatcccccagttgctgacccgttatgagtgagaaagtgaattgctgtcccttgatagtgaggctatgctaattgcctttggatgtctgcagggttacagagtaatatctggccttgttgccagagaatggtgcctaatggaaatttgttcaaagttggacataatcaaccttgttacagatcccaaaatggagatgacaaaacttggtacgtacctaggaagacttatgaattgcgatgatgctgatgcagtaaatttagcgcctccttttctagttttccagcccaagggtgatacagtatgatgtttgctttagtatttggagaacttttgtacaactgcttttggagttgctgactgcttagagttgatcatggtttcaagcttaagcaacttcttactccacttttagcacttagcaccagttactaatcagaattgcgcttagcaatgcaatggagtagtggctcttatttactattgtggtcgtggacatacagttttctgtttaccaaatgaaaaaagagtaatgttggttcatttttgtaggcatggaagcacggcatgattgttgtctggcgatcagcaaggcattatcatcatcacatcttcttcatgaaccaagcctttctgaactcattggaaaggtatcctcgtaaattccattgttttctgatcttgctgttggattgtgaatagtgaggtgctgaccaccaaggaaaacatcttgtgacagttgaatgaagcggttaaaaggggtccttatctttctgagaggaagcgtgtggagccacagccggtggttgtcccggcagagaggttttaactctttacctgaagcacaggccgtctaacctttgcaacccagagaaaactgaggatgcctatgcagctggctttttgtatatggttaaccaaaaatagagatgatggatgtaccacctgtgttcctggtgcgctaaacatgtctttgacgaccgaagatactgttatttcagctaagtaatataactcagtggatgctgttgggaacg</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0557200, RefSeq:Os05g0557200