Os05g0557900

From RiceWiki
Revision as of 10:33, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0557900| Description = Esterase/lipase/thioesterase domain containing protein| Version = NM_001062828.1 GI:115465386 GeneID:4339581| Length...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os05g0557900

Description

Esterase/lipase/thioesterase domain containing protein

Version

NM_001062828.1 GI:115465386 GeneID:4339581

Length

3856 bp

Definition

Oryza sativa Japonica Group Os05g0557900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:27841133..27844988

Sequence Coding Region

27841295..27841798,27841965..27842249,27842359..27842456,27842533..27842582,27842820..27842948
,27843061..27843165,27843266..27843473,27844256..27844325

Expression

GEO Profiles:Os05g0557900

Genome Context

<gbrowseImage1> name=NC_008398:27841133..27844988 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:27841133..27844988 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaggactatttttcacgcatcctagaccttgcttggcagttacgacatcaactgacacgattaatagaacatgtgtttgggtatattgattggatcccagaacatcatggattccagttctctccttgttataaaagatcattacctgccaccgaaagatacatccgtggagaggctcccttgctgtctgtcagtaattctacagaagaccagaccccaaatggactatctgaagccattgttgtcagaaaaggcttgtccagtatttgtcaaaggtttcccagttttttgcatgacttcagattgggacaacagttggcattccatttgcgagaactgtgcagtgctgttgcaagtgaaattcatgctaaactagctaggttcttacatcgtttctggacaacattacagggatcttctaaagatataggatggctaaaaagaacaaaaacattgccttgttcagttgatggtacagatcgtttcaaggagcttttgtatggcatcagaaatggcatgcatcatcttcctaacacactggtttacttattcatccctggactttttagtaatcacagtccactttacttcgtcaatacgaaaagaatcttttcgaagatggggcttacttgccatattgcaaggattcatagtgaggcatcagtggagaaaaatgcacgggaactgaaattatacattgaagagctgtactggggttctggtaaacaggtgttgctcctgggccatagcaaaggtggagttgatgcggctgcggcgctttcgttgtactggtctgaactcaagggcaaggttgccggactggcattggttcagagcccatatggtggcaccccaatagcttccgacatccttcgcaaaggccagattgctgataaggagacaaggaggatcatggaactgataatatgcaaactcatcaagggtgatataagggccttggaggatctcacatatgacaagagaagggacttcatctccaagcacaagctccccgtggacgaactgccgatcatctccttccacaccgaggccagcaccgccccgacgatgctcgtgacattgtcgcgcgtcgcccaagccgagctcctcccatggctcccattgccgcggttcctgtcgtcatcggagtacgccgaatcgttgctcgcctctctgaagctccccgtggtcgtgccggcctcggcggccatggccgtcagcgcgctccacctgaggctgcgctacggcgagaggagcgacggcctggtgacgcggcgggacgccgaggtgcccgggtcggtggtggtgaggccggagaggaggctggaccatgcgtggatggtgcactccacgctgagaaaggatcatgccgaggctgatgccactcagatgtgtgaagccctgatggccatgctcgttgagattgggaggaagaaatgctgctga</cdnaseq>

Protein Sequence

<aaseq>MEDYFSRILDLAWQLRHQLTRLIEHVFGYIDWIPEHHGFQFSPC YKRSLPATERYIRGEAPLLSVSNSTEDQTPNGLSEAIVVRKGLSSICQRFPSFLHDFR LGQQLAFHLRELCSAVASEIHAKLARFLHRFWTTLQGSSKDIGWLKRTKTLPCSVDGT DRFKELLYGIRNGMHHLPNTLVYLFIPGLFSNHSPLYFVNTKRIFSKMGLTCHIARIH SEASVEKNARELKLYIEELYWGSGKQVLLLGHSKGGVDAAAALSLYWSELKGKVAGLA LVQSPYGGTPIASDILRKGQIADKETRRIMELIICKLIKGDIRALEDLTYDKRRDFIS KHKLPVDELPIISFHTEASTAPTMLVTLSRVAQAELLPWLPLPRFLSSSEYAESLLAS LKLPVVVPASAAMAVSALHLRLRYGERSDGLVTRRDAEVPGSVVVRPERRLDHAWMVH STLRKDHAEADATQMCEALMAMLVEIGRKKCC</aaseq>

Gene Sequence

<dnaseqindica>3191..3694#2740..3024#2533..2630#2407..2456#2041..2169#1824..1928#1516..1723#664..733#gtcgtgagggcttctttttgacctcgttccctacctccatccatccacgcacgccgccccccacattgggagagacaaaaggcgggacgctgatcgagcttcttctcgggattttagggtatgttcttgctgtgttttccctcccctgtattcgtgataacggtgcgttcttgaggctacttcggtttgcgctccacgtgttcggtgaaatgcctgtgagagaggaggaagattcagtactcatgcctctcctactctcttcttttattctgttgttgttttgataatttgtctggtcttcttgattattttgttagattgcagatgccaaacggccgcaggtctgtgattgtaccagcccaaatattgcattcctagtttctcttaacaaatgccactcgaatgtgatgccaaagagccaatattgacaacaaattaatgttggctcttgccttgtgcaccacagcaatgaatgaatgacagttgtataatagtttgtgagccatatgaccaaatgaagattatagtcatagacatgtaggcaatccatctctcttgataccgtagtgtggatgtatgctgagttgctgacatgtccatgttttgttaggaaggtaaaacaacacgagtgatgctctttgtcattttcatcctggaacacatatggaggactatttttcacgcatcctagaccttgcttggcagttacgacatcaactgacacgattaataggtaccaagcatatagtgcccttgttgattataataaagcagaatatagcctgctaatgtttcattctatattgctgtattttctctgcggaaaggctaaaaaactgtcgacacatttttctttagaaatatatcgatttctgatccattagatcaactgtaagattcgtgctattttggttgacgaaaataaaattgtactgcaaagaatcgaacctaggatttccggtggcttgtccagcggccttgaccaactgatcgagcaaagattttggcttgaattgaaattacatactaattacacttaaattacatactatttacatatataatttagagacttacattgtaaatacactaaaattacatatgtaatttagagacttacatatgtaattttaggacttacattgtaaatacactaaaattacatatgtaatttatgggcttacaatgtaaatacatgccaactattttttggtgaaaaatatggtgccataaatatagctactcccttttctctgtgctaattccgaattaccagctccctgtaaataatggacactttcctttttagtttacacatagagaatttgttggaaatttgattagttcgttagctactagatatggatttaggatgggcaaccagttatgatgaacttgattggctctataagaaacacactctcaatatgaaatttgcatatacttattcggttattcctcttgagttttctttatattttttttacatgctgatactttttttttccatgccagaacatgtgtttgggtatattgattggatcccagaacatcatggattccagttctctccttgttataaaagatcattacctgccaccgaaagatacatccgtggagaggctcccttgctgtctgtcagtaattctacagaagaccagaccccaaatggactatctgaagccattgttgtcagaaaaggcttgtccagtatttgtcaaaggtttagtttttctttctaacttcctaatcagaacgttaataatatacataattatttttattcacattgcaactatttgttctgtctgatcatatggcaggtttcccagttttttgcatgacttcagattgggacaacagttggcattccatttgcgagaactgtgcagtgctgttgcaagtgaaattcatgctaaactagctaggttagttgctgtcttcaaatttccaacttttatgtgttgcatccgttctagtccatgtgatgaatttctgtttgcttgagccaggtgctaaaaaactgctatatgcttgcaggttcttacatcgtttctggacaacattacagggatcttctaaagatataggatggctaaaaagaacaaaaacattgccttgttcagttgatggtacagatcgtttcaaggagcttttgtatggcatcaggtgatcttttgttcatgcctattaaagtaccactgactttatttggagagtactatcttttacggaccctacatgtagaactactcctatctaacaacaatagggaattgagccactgaacatcatttacggaagtaacagatttattcctggtatcaatccatatggaggtccaacattcaattattatcagttcatgcaaagaccaatgatactaaaagaagcttaatgtttcagaaatggcatgcatcatcttcctaacacactggtttacttattcatccctggtgagacattttttttcattttttgcaaatgatgttaaaatgcctagctttatattggttcgctgcccttgtgcaggactttttagtaatcacagtccactttacttcgtcaatacgaaaagaatcttttcgaagatggggcttacttgccatattgcaaggattcatagtgaggtaacagagctcaacaggggtacatgcaaacaattttctcatgtttaccaagctctagattgtagcatttcttctgtttgtccctgtactcacctttcatttcgcccaggcatcagtggagaaaaatgcacgggaactgaaattatacattgaagagctgtactggggttctggtaaacaggtgttgctcctgggccatagcaaaggtggagttgatgcggctgcggcgctttcgttgtactggtctgaactcaagggcaaggttgccggactggcattggttcagagcccatatggtggcaccccaatagcttccgacatccttcgcaaaggccagattgctgataaggagacaaggaggatcatggaactgataatatgcaaactcatcaaggtcctcattatcctggtctctgtgttacctaatcagatcaaacctttatgactgagttattaggcaaatctttcaaaaaaaggactttatgaattgttcatatatcactgttttctcatattcttgtgcatttcatatcatgatcttaacaagtaaacaaatgcagggtgatataagggccttggaggatctcacatatgacaagagaagggacttcatctccaagcacaagctccccgtggacgaactgccgatcatctccttccacaccgaggccagcaccgccccgacgatgctcgtgacattgtcgcgcgtcgcccaagccgagctcctcccatggctcccattgccgcggttcctgtcgtcatcggagtacgccgaatcgttgctcgcctctctgaagctccccgtggtcgtgccggcctcggcggccatggccgtcagcgcgctccacctgaggctgcgctacggcgagaggagcgacggcctggtgacgcggcgggacgccgaggtgcccgggtcggtggtggtgaggccggagaggaggctggaccatgcgtggatggtgcactccacgctgagaaaggatcatgccgaggctgatgccactcagatgtgtgaagccctgatggccatgctcgttgagattgggaggaagaaatgctgctgatcataatcttacagtttcttggttaaattcaagtttgaacttgagtttaaaccaaacttaggatccaatgccataatcatagatgatgttacaaggcagtttacaaatacagaatgatttccactttgaaggaccaatataaaatgctctttatttcccccg</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0557900, RefSeq:Os05g0557900