Os05g0559400

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Revision as of 10:33, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0559400| Description = Similar to IAA11 (Fragment)| Version = NM_001062835.1 GI:115465400 GeneID:4339588| Length = 4192 bp| Definition = O...")
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Gene Name

Os05g0559400

Description

Similar to IAA11 (Fragment)

Version

NM_001062835.1 GI:115465400 GeneID:4339588

Length

4192 bp

Definition

Oryza sativa Japonica Group Os05g0559400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:27927782..27931973

Sequence Coding Region

27928073..27928110,27928873..27928934,27929641..27929782,27930587..27930816,27931476..27931849

Expression

GEO Profiles:Os05g0559400

Genome Context

<gbrowseImage1> name=NC_008398:27927782..27931973 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:27927782..27931973 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgccgccgccgctcgaagcgcgagactacatcgggctcgcggcgtccccggcctcgtcctcctcctcctgctgcgcgtcgacccccgtcgccgaggtcgtcggggcgcacctcgcgctccgcctcggcctcccggggtcggagtcgcccgcccgcgctgaggcggaggctgtcgtcgtcgacgccgcgctcacgctcggccctgctcctcctcccaggggcggcgccaagcgcgggttcgtcgactccctcgaccgatccgagggccgtcgtgctgctgccaccgccggtgatgatgagaggggcgtgagggaggaggaggaggaggagaaggggttgggggaagctgctgctggagctccgcgagctgccaaggcacaagttgttggatggccacctgtgcgaagctaccggaagaatacattggccgccagtgccacaaagacaaagggggaagaccaaggcaaaagtgaggtaggatgttgctatgttaaggttagcatggatggagccccataccttaggaaggttgacctcaagacctattcaagctatgaagatctttcacttgctcttgagaagatgttcagctgctttatcactggtaggagcagttcacataaaacatcaaaaagagacaggctgactgatggttctagggctgatgcccttaaggaccaagagtatgttcttacctatgaagacaaggatgctgactggatgcttgttggtgatcttccttgggacttgtttactactagttgtcggaaactgcggatcatgagaggttcagatgctgctggaatggctccgagatcactggaacagacaggtcagaacaaatag</cdnaseq>

Protein Sequence

<aaseq>MPPPLEARDYIGLAASPASSSSSCCASTPVAEVVGAHLALRLGL PGSESPARAEAEAVVVDAALTLGPAPPPRGGAKRGFVDSLDRSEGRRAAATAGDDERG VREEEEEEKGLGEAAAGAPRAAKAQVVGWPPVRSYRKNTLAASATKTKGEDQGKSEVG CCYVKVSMDGAPYLRKVDLKTYSSYEDLSLALEKMFSCFITGRSSSHKTSKRDRLTDG SRADALKDQEYVLTYEDKDADWMLVGDLPWDLFTTSCRKLRIMRGSDAAGMAPRSLEQ TGQNK</aaseq>

Gene Sequence

<dnaseqindica>3864..3901#3040..3101#2192..2333#1158..1387#125..498#acttctccctttaagctctctcctccccttctccaagagaagaacaaaaagacattcgctttcgcctcttctccccctctcctctcctctcctctcctctctgcgtgtgcatctctcgattccgatgccgccgccgctcgaagcgcgagactacatcgggctcgcggcgtccccggcctcgtcctcctcctcctgctgcgcgtcgacccccgtcgccgaggtcgtcggggcgcacctcgcgctccgcctcggcctcccggggtcggagtcgcccgcccgcgctgaggcggaggctgtcgtcgtcgacgccgcgctcacgctcggccctgctcctcctcccaggggcggcgccaagcgcgggttcgtcgactccctcgaccgatccgagggccgtcgtgctgctgccaccgccggtgatgatgagaggggcgtgagggaggaggaggaggaggagaaggggttgggggaagctgctgctggagctccgcgagctgccaagtaagcatgcgtgctcctgtttggttttgagttggtttgatttagagctctctgggctaatttatagcttgttaaatataggaatatttgatttgctggtttgatggcgcttcattagttctagatgttaaaataggagcagtagtgaccaattaaattgatactagttctcatggttattttctctggaatgtagaaatgatcaaatacatagtaatagtatattttgctgtgctaattgttagtcaacagttataaagtttgaatcttgagacacacgtgcgctttatgttcatcattggagggggtacttgctaaactgaacacggaagaaaaagattcctggtaaaaccgccacctgactggaaaaagctcgagctttgttgaaaaattgtcacataaccaggtgttgtgaccaaatggtgctgcctctcttgattttccacctgcactggtactgttgctcaggtgatataactaaactgcttaggagttaggatagagatatgtaataaactacttgtaaccaggtcttgaagggttcaagggacctgagttcaattttttcatgaagttggtggttagttgaagatcatatgtcactagatatatgttttgttctgaaacatttagtctgatagtatgtgtttatgcgctagggcacaagttgttggatggccacctgtgcgaagctaccggaagaatacattggccgccagtgccacaaagacaaagggggaagaccaaggcaaaagtgaggtaggatgttgctatgttaaggttagcatggatggagccccataccttaggaaggttgacctcaagacctattcaagctatgaagatctttcacttgctcttgagaagatgttcagctgctttatcactggtgagtatttctgttttctgtttgtttctttgtagatttgttcaatttgctttcttttgcatgtagctttagatgccaattagtttggttgtgtacttgtgtcattgcgtgcatccttatttggtacatagactggaagtaagttatacttccattatccaaaaaaaatcaatttgtgtgcattagtttgatgaaatagaacgatattttgtgtgcattaaatatgtagttaagacagatattctgtgtaatgaaatattccattatctaataaaaagactgatataatccatgtcttttttcctcgcttttggaagatcttcggagttctaaaataatgtaatgatagaaggggaagctgatgcatggctactagtggatttggtctagctggactacagttgccagattattttgactaagcatatttcttcatctgagtcaagtagccaagaactaaccgtagaacaataagtgctgtgcttagatgctaaaccctgttttcctatgcggcggtgaaacaatagaaaagtgataatgaagtccattagtaaaaagagaactcttgtggtaactatgtttgtttaaaatttgatttgcttactttaccgatattttgacacagttattgtgtttgcactgtatgtttgtgtaagttgaaatagcatttccatttttactaagcccatgtataccttgattttgggacgctcgtgtgtattcaactacaaaagtgctttctattgtctgtattttacatatatccaggaaacatattaatggttgacttgttttgcaatacaggtaggagcagttcacataaaacatcaaaaagagacaggctgactgatggttctagggctgatgcccttaaggaccaagagtatgttcttacctatgaagacaaggatgctgactggatgcttgttggtgatcttccttgggagtgagttctaactttgtgatcatgcatcttatcttatttaaattgtgatggtttttatgattttctcttgcggcattcttgtcttgcatagaatacgttcagacattcagataacagtattcttctgctgttgatgcagtaactgtagttaggagatcttgatagtgtatgatgggagcttgatttaccaataatgttacttcttctagtggtttgaactcgataacacattactaacacttatgatgatatttggagtcaactaaaattatgcaaaccaatgccctgtaacttgctgaaaagttagatggactcgtgtaaaatgtttattcaagtctctctctctagagttctctgagtactccagtttcactcttcagtatgaattagaattataaatcctttctgaattttgattgttctctttgagaaagttcgagttctatgggcaatgttttttcatacttttagttggcacatttcaagagtttgtacagtctaccaataaaaatttatcttgtataaaaatgtgtcactcccacccctcagtactacactgtttcgtatatcaacagacaattgttcacaagttcaatatgacctatgaattgtttgactgagctaccatgtttttttttcccgatgtttcagcagttatttacaatcattcttggttaccatctaatatcttgtacatcattttcagcttgtttactactagttgtcggaaactgcggatcatgagaggttcagatgctgctggaatgggtatgtgcaatatctgtagcacttggccatactttgatttcaaggtttcatgagacaaattaatcattcaagcattcacatgcttttccattgagatgcgcattatgctaatattggtgataacttggaccttgctggttagttgtacctgtacaattacaaataaattatgtcacatgtttaaatttttcattgatgtttattggcatagcctcagataacttgagtaacggtaactcggtaagacataagacatgaaaagggtgaggatatcgcatgaaatttaccagtcctacaattgaagacacaagtctgattgtatccttgattttggaataaagcaagtgaacaaatacaacatgttctttggcctttggaggtatattcctaaaatacagaatacaaatataactgcacgccttatgcatcgtctattgcaacaaatcactagtgatttggctgaaggtggatcagtccacattgctaaaatgctaaaagcctaaaactattttgacttaatctggatgacctggaactctgcaactaagtattacagatctgcctttatatttagaggcatatctaaacatcattttccattggtatctgatatttgggaacactggtggatgctctctcattagctagcagcatttttcttatggggttttgaccgtaacttcttgataacttaatgcatcgattccttaacgaatatgtattgatttgtccttgtctgaagtatcttctgtgtccctgcagctccgagatcactggaacagacaggtcagaacaaatagttgcccgagctttcatcatctggacagcaaatgtgtggaccaagtttgctgtagcaagtttccgctgaggggtgcagtgttttacctgaagtatctccgctattagtttatttacgtgtgtagtgaaatctgtggcgtattgtaaaacagccattttgcctacgaggttgtcttgtgtcaatctgtagatggtcgattttgtctttgaaagatcaagtcaggctgcttaatgcttcctgtgtgatactttcatcaattctctcatatatatattatctggagttgcacttg</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0559400, RefSeq:Os05g0559400