Os05g0568900

From RiceWiki
Revision as of 10:34, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os05g0568900| Description = Similar to Protease Do-like 1, chloroplast precursor (EC 3.4.21.-)| Version = NM_001062895.1 GI:115465520 GeneID:4339...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os05g0568900

Description

Similar to Protease Do-like 1, chloroplast precursor (EC 3.4.21.-)

Version

NM_001062895.1 GI:115465520 GeneID:4339651

Length

3528 bp

Definition

Oryza sativa Japonica Group Os05g0568900, complete gene.

Source

Oryza sativa Japonica Group 

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:28396664..28400191

Sequence Coding Region

28396996..28397073,28397154..28397288,28397677..28397829,28397916..28398114,28398218..28398255
,28398755..28398926,28399572..28399694,28399775..28400190

Expression

GEO Profiles:Os05g0568900

Genome Context

<gbrowseImage1> name=NC_008398:28396664..28400191 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008398:28396664..28400191 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggccgccgcctcctcctctgccgccgcctgcttcctctccccgtcccctcctccccgcccgcgccaccattccatcaaacacctcgcgtgcgccgcctccaggtcgccgtcgccggggccctcctcctcccgctccctcgccctcccttcgccttcggcttcggcttctccgtggccgtggccgcggcggctccgcgacctgctccccgacgagaccggccggatcctgtcgtccgccacgggctccctcatcgtcgccctcgcctcggccgcgctgatcctcggcgacgccggctccgcctccgcgttcgtcgtcgccacgccgcggaagctgcaggccgacgagctcgccaccgtgcgcctcttccaggagaacacgccctccgtcgtctacattaccaacctcgccgtgaggcaggatgccttcacgctggacgtgctcgaggtgccgcaggggtccgggtcggggttcgtctgggacaagagcggccacatagtcaccaatttccatgtcatccgtggcgcgtcagatctcagggtcacacttgctgatcagacagtgtatgaagcgcaagttgttggatttgaccaggataaggatgttgctgttttgcgtattaaagcaccaacagataaattaagacctgtaccagttggtgtgtcggcagacttactggtcggtcagaaagtatttgccatagggaacccgtttggtcttgaccacactcttactacaggagtcatcagtggattgcgtagagaaatcagttcagctgcaacaggacgccctatacaggatgtgatacaaactgatgctgctatcaatcctggtaacagtggtgggccacttcttgatagctcaggaaacttgataggtgtaaacactgctatatactcaccttcaggagcatcatccggtgttggcttttccattccagttgatacagttggtggtattgtggatcagcttataaagtttggtaaagtaacaagacctattctagggataaaatttgctccagatcaatctgtagagcagcttggattaagtggagtgcttgtcttggatgctcctccaaatggaccagcaggcaaagcgggtctgcaatcgaccaagcgggattcctatggtcggcttatcctaggggacataattacttctgtgaatggaacaaaggtaacaaatggaagcgacttgtataggattctggatcagtgtaaagttggagagaaggtgactgtggaagtattgcgtggagatcaaaaggagaagatacccgtgattcttgaaccaaagccagatgaatcataa</cdnaseq>

Protein Sequence

<aaseq>MAAASSSAAACFLSPSPPPRPRHHSIKHLACAASRSPSPGPSSS RSLALPSPSASASPWPWPRRLRDLLPDETGRILSSATGSLIVALASAALILGDAGSAS AFVVATPRKLQADELATVRLFQENTPSVVYITNLAVRQDAFTLDVLEVPQGSGSGFVW DKSGHIVTNFHVIRGASDLRVTLADQTVYEAQVVGFDQDKDVAVLRIKAPTDKLRPVP VGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAIN PGNSGGPLLDSSGNLIGVNTAIYSPSGASSGVGFSIPVDTVGGIVDQLIKFGKVTRPI LGIKFAPDQSVEQLGLSGVLVLDAPPNGPAGKAGLQSTKRDSYGRLILGDIITSVNGT KVTNGSDLYRILDQCKVGEKVTVEVLRGDQKEKIPVILEPKPDES</aaseq>

Gene Sequence

<dnaseqindica>3119..3196#2904..3038#2363..2515#2078..2276#1937..1974#1266..1437#498..620#2..417#aatggccgccgcctcctcctctgccgccgcctgcttcctctccccgtcccctcctccccgcccgcgccaccattccatcaaacacctcgcgtgcgccgcctccaggtcgccgtcgccggggccctcctcctcccgctccctcgccctcccttcgccttcggcttcggcttctccgtggccgtggccgcggcggctccgcgacctgctccccgacgagaccggccggatcctgtcgtccgccacgggctccctcatcgtcgccctcgcctcggccgcgctgatcctcggcgacgccggctccgcctccgcgttcgtcgtcgccacgccgcggaagctgcaggccgacgagctcgccaccgtgcgcctcttccaggagaacacgccctccgtcgtctacattaccaacctcgccgtgaggtagaaatccgccgcgttcgtcctcctcggcttgcctttttttttttcacgcgtactgatgcgaattcgggttgctataggcaggatgccttcacgctggacgtgctcgaggtgccgcaggggtccgggtcggggttcgtctgggacaagagcggccacatagtcaccaatttccatgtcatccgtggcgcgtcagatctcaggtttgttaaaatgacatgctgctgtcgcccacttagagctgaattcgaatcatacttcacaattctgatagatttttttgggtgcatgaagatttgtataggagtgtaaattgctctagacttctagaacttgaaatggatggagtaatgcaaatagatgttggttagctgcagtaatgtggttacagtgacaactgacaacggttcagtgaactgtaaacacttcctactagtgactcattattcaatggcttcctttttcttagtttaatatgttcaaaggtgctatgatatagattagtcatagttgctgacaggattgtgtgtttgaagctttaaaacgattatattttgcatatcattttcattatgtacttaaatgctacacttgagtatttggtgcacaataattcattcccgagcccaacaataacttgcgttttggtttcttctaagccgcatatactagtatgctgtgtacactgttctgctaatgctacatggtgccaacttattgacaatgcattattgcatatagagctaaaacatccatccatctaagatactgttttgatgaattcttatgacataataacctccaacggtatcatggcgaagtgaagttaccacgctagttttatgcagggtcacacttgctgatcagacagtgtatgaagcgcaagttgttggatttgaccaggataaggatgttgctgttttgcgtattaaagcaccaacagataaattaagacctgtaccagttggtgtgtcggcagacttactggtcggtcagaaagtatttgccatagggaacccggtgagtgtttcttacaccaactgttcggtgtattacccattcatgacaactggctcataagcttaataaaatgtattctaacatagtctcaaaaaaacactatccagttctttacttgtgatgtgcacccctgaataatttatttccatagtttcaatgtacttttctgttcagagctgaaacaaccttagaaatccccctagctgttcatgaatatgtctgacattgtaatgaaaatacaatatatgctagagaatattgtacacaaaaaaaatacaattaatcactatgcaaacaaccaatatatcaaaatgatcttatgccactaagactatgtatcgcgtgttttggtgatatctttaggcttttagcacgtattgattcctggatagaaaaatatgcttacaacacttgattattctgagttattttctatcatgcttgcattaacttactgatcactaacagtctgtaacatgttatgtctatgtttatgcagtttggtcttgaccacactcttactacaggagtcatcaggtgtaatgttgtttgagtaaacagattctgtcttttgctgattcataatgcaatacactgagacacctctgttttgtttttctgttgacccccttccctgcagtggattgcgtagagaaatcagttcagctgcaacaggacgccctatacaggatgtgatacaaactgatgctgctatcaatcctggtaacagtggtgggccacttcttgatagctcaggaaacttgataggtgtaaacactgctatatactcaccttcaggagcatcatccggtgttggcttttccattccagttgatacagtatgcaacttgacataaatacaaaactcagagtttcagaattttttattttctattctattaacatctcttttgaacacatccaggttggtggtattgtggatcagcttataaagtttggtaaagtaacaagacctattctagggataaaatttgctccagatcaatctgtagagcagcttggattaagtggagtgcttgtcttggatgctcctccaaatggaccagcaggcaaagcggtattgtccatagatcttatttattggtttcctgtaaattgcagtcagtcttaaaagcattggttttcttgcactaggcatgttccaattacgtgtcaatttgagtttactgggagaacacctgagttattactccataacatcatatgctatgttgattgatgtcctctcgtgtgttttcaatcgtcactaggactaaggacagctgaacagacataacagtgataattcatttagcataaaggctaaccttatgtgattgatagaacaaatcctttttattgcagacactgtattttctttgaacatgttcgtgtaatagaagactagctgcttgctttgaaaatgactggtgcaactaaaacttatacatcttgttgtatgctagggtctgcaatcgaccaagcgggattcctatggtcggcttatcctaggggacataattacttctgtgaatggaacaaaggtaacaaatggaagcgacttgtataggattctggatcagtgtaaagttggagagaaggtaagctttcacacgtttttgtaaggaagaaattgctgtgattgataatagctcaggtacttatgcatattgtgttataggtgactgtggaagtattgcgtggagatcaaaaggagaagatacccgtgattcttgaaccaaagccagatgaatcataatagtaagccacctccataggatccactctactgtttgtatgtccacatagatgcagaaatggaatatatacaagaaattagcattttcccctaccacggaattcgctgtacataattcatgcttgtaaattttctggcaaaaagagaaaatccaatttggcttatttccttgtcattcatgcttctggtgtaaccgcctcagtagagacgtgtcatacgtgatgtctctgttttcctgtattttggtgaggaccatgtacagcagagactatatagtagaccccacactgctccgtaagtctacttaacatggcctaccgtatttacactgc</dnaseqindica>

External Link(s)

NCBI Gene:Os05g0568900, RefSeq:Os05g0568900

Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os05g0568900&oldid=14981"