Os06g0135900

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Revision as of 09:02, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0135900| Description = Similar to Sec1p-like protein 2 (Fragment)| Version = NM_001063257.1 GI:115466245 GeneID:4340037| Length = 8079 bp| ...")
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Gene Name

Os06g0135900

Description

Similar to Sec1p-like protein 2 (Fragment)

Version

NM_001063257.1 GI:115466245 GeneID:4340037

Length

8079 bp

Definition

Oryza sativa Japonica Group Os06g0135900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:1899869..1907947

Sequence Coding Region

1901314..1901321,1901689..1901770,1901847..1901966,1902568..1902663,1902753..1902878
,1903134..1903230,1904485..1904555,1904638..1904733,1904812..1904895
,1905002..1905189,1905784..1905910,1906384..1906416,1906498..1906594
,1906701..1906751,1907089..1907167,1907382..1907463,1907658..1907716
,1907830..1907902

Expression

GEO Profiles:Os06g0135900

Genome Context

<gbrowseImage1> name=NC_008399:1899869..1907947 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:1899869..1907947 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcgatgtcggggtcggacttcggcgccccgtgcgacgaccccaagatcttccgcaacatctgccgggatcgtatactcaaggacttgctgcagccggacaaagataaggagaccaaaagctcatggaaggttcttatcatggacaaatttacggtgaggatcatggcttatgcctgcaagatggcagaaattaccgatgcaggaatctcgttggttgaagatcttttcaagcgaagggagcccatgccttccatggatgcaatctacttcctccagccactgaaagaaaatgtcataatgcttctatctgacatgtctgggagatgtccactgtacaggaaggcatacatattctttagttcaccgattcctaaggagctggtctcttacataaagaacgacagcagtgtgataccacgtattggtgcactaagagagatgaatttggagttctttgcaattgacatgcagggattcacaactgaccatgacatggcattcactgatttatatagtgctcagcacaactcgaaaaagttcaatgacactataagcactatggctactcgcattgctaccacatttgcttcgttgaaggaatttccttgtgtgcggtatcgtgccccaaagggcacagatccaatgacaacaccaaaatttgacatggttccaaaatggttagcgactgctgtttgggatattgtgtcaaaatataaatcaacaatacctgaatttccccagaaggagacatgtgaactgctcattgtcgacaggcctatagatcagatagcacctgttattcatgaatggacctatgatgcaatgtgccatgatctacttgaaatggatggccaaaaatacatatatgaggtgtcgaaagcgggatcagaacctgagagaaaggaggctttattggaggatcatgatcctctctgggttgagcttcgccacattcacatagctgatgctagtgagaggttgtatgataagatgaataactttgtttcaaagaataaagcagctcaacttcattcaagagatggtggtgaaatttctacaaaggatctgcagaagatcgttcaagctttgccacaatacggtgaacaagttgagaaattgaccctccatatagagattgctggaaaaatcaacaagtttatcagagagtatggtctccgtgacattgggcaggtggagcaggatctagtttttggagatgcagcagccaaggaggtgatcagtatcctcaggtcaaagcaggatatgagcccagaaaacaaattgaggttgcttattatatatgcaattgtatatccagagaagtttgaaggtgacaaaggggaaaagttgatgcagctagcaaaactgccacatgatgagatggatgccataaatagtttaagatacttggttggttcagatacaaaaaaggcatcacggcctggcggcttctctctcaaatttgatgcacaaaagaaaaaaaatgctgcgaggacagaacggcaggatggcgatgaaacctgggcattatcacgttttttcccacttatagaggcatttgattga</cdnaseq>

Protein Sequence

<aaseq>MSMSGSDFGAPCDDPKIFRNICRDRILKDLLQPDKDKETKSSWK VLIMDKFTVRIMAYACKMAEITDAGISLVEDLFKRREPMPSMDAIYFLQPLKENVIML LSDMSGRCPLYRKAYIFFSSPIPKELVSYIKNDSSVIPRIGALREMNLEFFAIDMQGF TTDHDMAFTDLYSAQHNSKKFNDTISTMATRIATTFASLKEFPCVRYRAPKGTDPMTT PKFDMVPKWLATAVWDIVSKYKSTIPEFPQKETCELLIVDRPIDQIAPVIHEWTYDAM CHDLLEMDGQKYIYEVSKAGSEPERKEALLEDHDPLWVELRHIHIADASERLYDKMNN FVSKNKAAQLHSRDGGEISTKDLQKIVQALPQYGEQVEKLTLHIEIAGKINKFIREYG LRDIGQVEQDLVFGDAAAKEVISILRSKQDMSPENKLRLLIIYAIVYPEKFEGDKGEK LMQLAKLPHDEMDAINSLRYLVGSDTKKASRPGGFSLKFDAQKKKNAARTERQDGDET WALSRFFPLIEAFD</aaseq>

Gene Sequence

<dnaseqindica>6627..6634#6178..6259#5982..6101#5285..5380#5070..5195#4718..4814#3393..3463#3215..3310#3053..3136#2759..2946#2038..2164#1532..1564#1354..1450#1197..1247#781..859#485..566#232..290#46..118#ggagaggagtggaggtagaggggatcaactccggtcggcggcgggatgtcgatgtcggggtcggacttcggcgccccgtgcgacgaccccaagatcttccgcaacatctgccgggatcgtaagctcgctcctcccaccccccacctcttctctgttcctcgtgtttatctatgtctgtatcatctgatcgctgatgccgcgcgaatcgatcgcttgctgctcttctcacaggtatactcaaggacttgctgcagccggacaaagataaggagaccaaaagctcatggaaggtagtacaaaagaaatgcattccttttaccctttcttttttggctccatctattcacatttctgttaattcatattttttttcctaacaaggtactactatattgtccccaaatgtggttattcttcaaaaaactatcaatgcatcgagtgtgaagggggatatacatattgatttcgttaatctcctgtgcaggttcttatcatggacaaatttacggtgaggatcatggcttatgcctgcaagatggcagaaattaccgatgcaggaatctcgtgtaagtttatcaagtctggacctgtcatcatattctagcgtacaaacagataattgtggacttgttgaaaaaaatgtgttttgttttctattgcattcacttggagggcgcctattcagaggtgcctggttcagcaaacagcacttcagtaagctggttgattttaatttataaaaaaaagacacttacatggacattttatcttgtcctgcagtggttgaagatcttttcaagcgaagggagcccatgccttccatggatgcaatctacttcctccagccactgaaagaaaagtattattcgatcgccattgaccacttgctttcgttttatcattctgcagcagcaaaattgatcgcaagtaccatatgcgtggagtaatgatctcgtctttgattcattttgtgattatgatatttcttttaggttgtagtcagtgtgtagtctatagtatgatactgaaggcatatatgcatctcaagccaaagctgtaacactgcatttccttttggtgcaaccttttttccttagacgatttttctgctagttaattaattaacgccgcataatcaacggttgaagttatattgtcttgaatcttctctgatatgtgagcctcgcaacctgcagtgtcataatgcttctatctgacatgtctgggagatgtccactgtacaggaagtatgtcaaaccgaattttcaatttgtaacccggaatgccaattacaaaagcttcaaatgcaacaaaattttgactcacatgttaatatctcacttgattttatagggcatacatattctttagttcaccgattcctaaggagctggtctcttacataaagaacgacagcagtgtgataccacgtattggtgcactaagagaggttaattatcctgtagtttgtaccttttatttctttgatttttacagatggattttctaatgccgatattgttaattccagatgaatttggagttctttgcaattgacatgcaggtattcatagccttcgatctatatgatctactagttatgcatattttttcttcattgctggctaagaatctatttagttctgattttagtttgttactgtcaagtatgataaacatatggcaattataagaagcaactggacgcaaacataaaactagcattgattgataagaagtttggacaatttagaactgcatttgcaccgtgaaggaaaattaaaacggttcatttgcatcaatcaaatgaattcatttccagttttgaaatattcgtgatattaccgaaggtgaaaacatagcaaatgatgcctgctaccatgctacacatgttggatggactgtggatgtattcgcatgctgttggctggttctttcatttgatattagggtggtctgttcttttttttttaaaaaaaatagaaatccgaattctcaagattaatgtaatgatttctctatgtggcatatctgcagggattcacaactgaccatgacatggcattcactgatttatatagtgctcagcacaactcgaaaaagttcaatgacactataagcactatggctactcgcattgctaccacatttgcttcgttgaaggcatgttaacatacttcatttgttattattattatctatttcctgtccactagtactaatttcatcacattaccgaaatatttcttaactgtctttccaattcagcatgtgtagcatgtattttttcctgatcgacatggttccaaaatgtttgatgacatatgttcttgcttgtcagtttttcattcccatttctccagccaaaagtgccaaccctgaagatctccttccttgaatcaccaggccgtaaaaagtacatattaaattccttgaaaaatgcaaagaatatgtcatgttaatgcacttcacagaacttcattaatagcctggtaactgacttaagtgggtgatattgtcttagcaatctcttgtggctgtgtgttgttgtggcagactataccttccccttgtgaatatttctgaactaaatattttaaaaggtatacatatacaatgatctactggacaccagcagttttgagtatctcatatcgttcttatgtattcttccagtctttaaatctatcaatgaaatatatatagcatcattattcctcttttttgtcaaacacaatctgattcaagttataacaggaatttccttgtgtgcggtatcgtgccccaaagggcacagatccaatgacaacaccaaaatttgacatggttccaaaatggttagcgactgctgtttgggatattgtgtcaaaatataaatcaacaatacctgaatttccccagaaggagacatgtgaactgctcattgtcgacaggcctatagatcaggtgctgaaggataacttatgtttcaataacttgtcagtgtagaagtatattgaagaaattcagtatctttcctactgcttacaataatttccgtatgtctgcaaagatagcacctgttattcatgaatggacctatgatgcaatgtgccatgatctacttgaaatggatggccaaaaatacatatatgaggtaaatgtgatatcgtattataataatgaacatgatctgttcacttgccctattcttatgtttaatttctgttggaaggtgtcgaaagcgggatcagaacctgagagaaaggaggctttattggaggatcatgatcctctctgggttgagcttcgccacattcacatagctgatgtgagttatgtgttgtactgttgtttaagattgttttaagtacaatttggtctctgctttctaacactaattgaaatggcaggctagtgagaggttgtatgataagatgaataactttgtttcaaagaataaagcagctcaacttcattcaaggtgcatgatcttcctcggtttagaggaacacaactgtaaatgttttaatagagtcgaatacaatatgccatttgaacaatgctactccattggtgtcgtttaccgttctagtttactgatggcagtcatgttttgtatcagctcttggatatccattatgctaggtacttatctgcaacagaatttgttgcagtgtaaacacaatttgatctacatctttactaagttactggcatatggcattattttttgaacgactgatttagtttggatatgaactgtaactctgatagacaagtattactggaatccttacaattcgaaggaaacaaagtagagtaaattccctgtgtacccctgaaaactcactcaatccctttcatacccctaaaatttacccgatcccttctgtacccctgaaatttcaatttgatcccttccatgcccctaccgttacattttccatcattttactgttacgtttggttgcaaatgtcttttttgcccttgatgctttaggtttaaatataagcttcaaaaataattgaaaattttgtttgagtgcacatcgtgtgcattttataaaactaatgagactaaataattagtgcagaaaattttgacataaattttgaaaataaaataaatgtaaaaaattaaaatttttatttgaaattttaataggacaatggatttttttatcaggagcattcataaaaaaaaatgttgtgaacattggtatacctatctttatatgaatgctcctcatttttatgaccttttttttaaaaaataaatacgtattttttttatttcattatctaaaaatatttttttgggataaataatgcatcgcacaacaaactcataactataatagtctcatgcgagaagcttttatatttttaataatgtaattcatgaatttctttgttcatccaagggtaaaatggtcatttttatagaaaatacacggtcaactaacggtcaactgacgggaggggtatgcaagggatcaaaatcaaattttgggggtatataaggaagtaagcaaaattcaggggtatagaagggattaggaaaaatttcaggggtatataagggattttctcaacaaagtaagctgtggtttgtagtttgatgtcaaggttacatcaaatgttgatcgatcagttgtttgctagccaaagtacagaaagtgcattgttctaagttctttcatattgcatgcttatgattccctttctcaattagagatggtggtgaaatttctacaaaggatctgcagaagatcgttcaagctttgccacaatacggtgaacaagttgagaaattgaccctccatatagaggtagatgattatttccatagtatttcctgtgcgtgctttatgttattttgtttacccttacaaataagttcgggatttctaggaactatcaagtaaatgtgaaaagaagcagctattgtttagaaaaacatgttgactgttgtcaccttaatacatacttatatgttcatccttgatttatgattttttttacaacttctatcttatcatcaaaataataaaaaatgtaatactcactattgaacttttattcagattgctggaaaaatcaacaagtttatcagagagtatggtctccgtgacattgggcaggtggagcaggatctagtttttggagatgcagcagccaaggaggtgatcagtatcctcaggtcaaagcaggtttgttaagaaagagagaatgaaagcagtcttactgctaattatttgtcagtttttattcaatgcttactgaactttctattgttcaggatatgagcccagaaaacaaattgaggttgcttattatatatgcaattgtatatccagagaagtttgaaggtgacaaaggggaaaagttgatgcaggtatttcctatcaagttttacattacttattagtgcaattattacattaatctgtcacaacccgaggacatgacgggataaacaccgtcgggtggatagatgcgtggaagcggctgctgctgctaggggtgagaggtagatttaggttggtaggacattgagagggattagattggattaatctgatttatcacttaattcataattgcataggatacaatccatccttatatagatgggacgacttaacccctaagaatggactcaatctaatcttacctaacgaactactacagtagcgtgctacccagagggtgttgggatgaccactggcctcagcctctcagcccaattacccatgacataatcatacataaacacagtttcggattttgcttgttataagcgtggaagtatagattaccaggttgactattatcattgttcaatggtttccttgagtgcttctatagtgctattcggagtgtttactaaagaaaatgtgacacagagggttctattagttggttttggggggtacaattgcatgcagttgattatataaacatatgacattttgaacaaactttcatttatgcagctagcaaaactgccacatgatgagatggatgccataaatagtttaagatacttggttggttcagatacaaaaaaggcatcacggcctggcggcttctctctcaaatttgatgcacaaaaggtgaggtcatgatttgagctaaattatttctaccttcttcccttgaactaacatgtgtgcttgacttatataccagaaaaaaaatgctgcgaggacagaacggcaggatggcgatgaaacctgggcattatcacgttttttcccacttatagaggcatgtggtataactattactactagtttacttctaaacttcctgcatcaaatatctccttggctaatttatttctgtgtgcttagtacaattaagaatattttcttatgaaattctattattcaccttttctgaaaccaacatatagcaaatttctaaatatgggaacttcaagaatgtggttcacattctgttaataaaatccggttcgtaataaactgaactggataataacaaacatagtggcaatgatttttggtgatgcctgttggataatacttttgttgagtggttatatacaaatcgtacttaaaataatggttcttattcgttgtttaaattaaggacttgcattcattctctaacaggagttgattgagaaactgagcaaaggtgcattacctttgaatgaatacccatccatgagtgaacccagttccactgaacaaggatctacacaaagtgcagccgcgactaaaccagcacaagcacaacccatgtccaggagatcgcggcggacaccaacctgggctaagtctcgaaactctgatgatagtcaatcaaggtattcaacaaatataattttctatttgaaccacttatccatataaaagtttttctagtaaaagtgttatatcagcttcataccttttacctgctttcttatcatcacaaactggattggcagtgactcctcggtcttgagacatggatctaatgacttcaagaggctaggcaaccgaatttttgtcttcatgattggtggagccactagatcggaagtaagccatttactgcaaactatttaataactcaaatcccattctgtttatgtggtcatcaattcttacacttaaatggatcagctgcggacggtgcacaagcttactatgaaactgaagcgcgaaattgtcctgggatcttctagcatagatgaccctccacaatttatttcggtaaacccatcctgtacaacacaataatgtattcgaatttctttcttttaccattatcatgcaatcctgttgcggcaaatagaagtttcttggattatactgttacattagttttaaatgtggaattgccaggcgatatttgaccaattgtactcattgtttgaattcaaaaatgcagaagctgaagatgctaactgcaggtggtgccaatgacgtctaaacttcgcacttagtttgcaaatcaaccgatgaaacaaacttgtcaccttttggtaaggtacctgctcgtactgcatgtctactcttataatttcctttctccactctgttggttcaatttggagtatctttgtttcaaaataataataataattcgagtgccttttaacacaaacatgtatgctgcttcatattgcagaaacccattgctacgaacagttagaaacgttggatgtcatcaatgactggactactcacaataattacacgattttttcatagtctagtatatataccaagtgagaagaagtgtcaaatgtacttaaaacatgtatgtagacaacatattttgcccacattatttattcttctttcagatgtaaaacgtagaacagttgcgacagttgttttgcccaaatttgtatatttatgaacactacaacaatgacatggtgacgattacactcatggatcaatcgattccgataattcgtcgtgaaatcgagttatttatggcgatgtggaaaatggttatagaggtgcgaatgtgcgactttataggctagttatagatgtaagttcaatgtgtatcgtatctgtcgagtttgtatagttttttttttaaccgagctatgaaatttaataattc</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0135900, RefSeq:Os06g0135900