Os06g0149400

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Revision as of 09:04, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0149400| Description = Similar to Chitinase A| Version = NM_001063351.1 GI:115466433 GeneID:4340137| Length = 4200 bp| Definition = Oryza ...")
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Gene Name

Os06g0149400

Description

Similar to Chitinase A

Version

NM_001063351.1 GI:115466433 GeneID:4340137

Length

4200 bp

Definition

Oryza sativa Japonica Group Os06g0149400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:2557018..2561217

Sequence Coding Region

2557136..2557202,2557281..2557324,2557442..2557537,2559268..2559360,2559459..2559549
,2559626..2559687,2559763..2559947,2560031..2560208,2560302..2560345
,2560449..2560644,2560737..2560754,2560848..2560910

Expression

GEO Profiles:Os06g0149400

Genome Context

<gbrowseImage1> name=NC_008399:2557018..2561217 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:2557018..2561217 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggcggcgacaaggagaacctcgacctctccgacctcaacgcctcgctgcccgccgccgccgccgctctcagcgccgaggaccgcgccggcctcgtcaatgccctgaaggataagctgcagagcttggcgggtcagcacacggacgtgcttgaggcgctctcccccaatgtcaggaagcgtgtcgaatatttgagggagatccagggccagcatgatgaaatcgagttaaaattctttgaagagagagctgcgcttgaagcgaagtaccagaagctttatgaacccttgtacacaaagaggtataacatagtaaatggagttgttgaggttgatggtggaaatgacgaaccagccagtgaaaatgctgctgagggtaaagatgcagatgctaaaggagtcccagatttttggcttactgctatgaaaacaaatgaagtgctttctgaggagatccaagagcgtgacgagcctgctttgaaatatctgaaagatatcaagtgggctagaattgacgatcctaagggtttcaagctggattttttctttgatacgaaccctttcttcaagaactctgtcctaacaaaaacgtaccacatggttgatgaagatgaaccaattttggagaaagcaattgggactgaaattgagtggtatcctggtaaaaacctgacacagaagattctaaaaaagaaacccaagaaaggttcaaagaatgcaaagcctattaccaaaactgaagtctgtgagagcttcttcaactttttcagtcccccgcaagtacccgatgatgatgaggacattgatgaagacactgctgatgagcttcagggtcaaatggaacatgattatgacattgggaccaccataagggataagatcatcccacatgctgtttcctggtttactggtgaggctgtgcaagccgaggattttgacgatatggaggatgatgaagaagatgatgaagacgatgatgaagatgaggaggaggaagaagaggatgaggatgaagacgaagacgatgaggaagaaaaaagcaagccaaagaagaagtcggcaggcaaaccgaagctaccatcgaagggcggggcacaaggaggtgctgatcaaccagcagattgcaagcagcagtag</cdnaseq>

Protein Sequence

<aaseq>MGGDKENLDLSDLNASLPAAAAALSAEDRAGLVNALKDKLQSLA GQHTDVLEALSPNVRKRVEYLREIQGQHDEIELKFFEERAALEAKYQKLYEPLYTKRY NIVNGVVEVDGGNDEPASENAAEGKDADAKGVPDFWLTAMKTNEVLSEEIQERDEPAL KYLKDIKWARIDDPKGFKLDFFFDTNPFFKNSVLTKTYHMVDEDEPILEKAIGTEIEW YPGKNLTQKILKKKPKKGSKNAKPITKTEVCESFFNFFSPPQVPDDDEDIDEDTADEL QGQMEHDYDIGTTIRDKIIPHAVSWFTGEAVQAEDFDDMEDDEEDDEDDDEDEEEEEE DEDEDEDDEEEKSKPKKKSAGKPKLPSKGGAQGGADQPADCKQQ</aaseq>

Gene Sequence

<dnaseqindica>119..185#264..307#425..520#2251..2343#2442..2532#2609..2670#2746..2930#3014..3191#3285..3328#3432..3627#3720..3737#3831..3893#gtggcttcccctttctctctctctctctctctctctcccttcgctttctctcttccttcctagggcttcccctcctcggcggcgcatcgcataggcggcggacgaagagctcccggcgatgggcggcgacaaggagaacctcgacctctccgacctcaacgcctcgctgcccgccgccgccgccggtaagctcacgcgctcgcggggtcttatcctgtcgtctcctttatttgtttcctgatcgatccgtgttttggccgcagctctcagcgccgaggaccgcgccggcctcgtcaatgccctgaaggtgagacgatttggatcgattttgaggcgctattcgattcgggagcggggggcgtggttggttgatttttggtacctgttagtttttctcatcccgtgtggtctgattcggttgcaggataagctgcagagcttggcgggtcagcacacggacgtgcttgaggcgctctcccccaatgtcaggaagcgtgtcgaatatttgagggagatccaggtgggcatggaatttccttgccactaattttcccgtttctaatgtgaatactttgccagatgttgttgtgttagaatattataatcaatggtatagctgttagatttagcttctggtaggcactgatttgtaaggatctcattagtcagccttatctgtactgctgcttttttattagtgctccttaattttgtaatgactagaaaaaacacccatgctttgctatggataaaagaaagtatattataatatgtaatagatattaaaacattgtcaaatatgttagtatcacttgtttacttgtttgaaccgaatatttggactattccataatatcaaaagatatcaggagccaatttgtggtgggtggcagattcactggcaccaccactagggacttttaaaggagtatagattctgtaaagaaaaatagttttagccaaaaaaaagttctgagcattacgtatatgtaatattcatgttaaggaaggagctagatgatggtaatcaggctttattatgtctgtcaggtgtcgaatatttatctctggcctattcaaagatgttcaatagtcaccatttgtttggttgtggtagtagctgatgggtaacatcagaatgacctgttcatcatcttggaggatatcaatatgctttatctatgctgtaaaattttatctctttaaatttatggaacttctgttggatatgacaataattcaagagtgatgttgatcatggaattctccttttgaattgaataagtaaagatattccttataaggggtcatattggtagaacagtaggattgggattaggatatggtttaggcttatcccagctatcttcctttcaccaagtcctccttcctaaccctccatctctatcccacttctaccatgaaatccaaacaacctattcatactttttgtgtgttgaacttccctttggtctagtaagggaataaagggcactagatctttttaatgagaagggaaagtaggtcaggtagtcaaatatgaacataatatctgctgttagacgtctatgcagggtagttgtctattgttatatgccactatgaaggtctttacagctttatatggtatatacagacttaatgctgctatgactattacctattgtacggggatttagtcttggaatttgatatgtgaactctcacatgacctaagcaacaagctttgatatatcattcaaatctctatgttgaaacagagaaagcacctaatgcaatgtcatcccctcagggaggagactggtccaagtttttatgttttatagtcttggaaagagtatggataatgtttatgtagtagtatgctttagaaccatagacattttgcctgtcaactattggataatgtgatttaaactttatttgctttctgtgttagcttcttggtagttggtactgctttgattcatccgttactaaaattgggtagttccaggcatgctgctttattcctggccttccatttccctgtttttatttttgtgcagtcaaagctgtgacctgtttcttctatttgtattttattctgcatctgccatattcatgatgaattgctcgagaaagttttgtttcataccatttccagcataatggaccaaattcgaacagtgctctacataaaattcacatctaaaccatgtgttgtaattgcttcaaagatccaactttttcttcactatactaatccagggccagcatgatgaaatcgagttaaaattctttgaagagagagctgcgcttgaagcgaagtaccagaagctttatgaacccttgtacacaaaggtatacttgttctttatgttaaatatgtgaacagtattccttttgttattttcttttgtgacagttactgaacccctgccccttttcctgttttccagaggtataacatagtaaatggagttgttgaggttgatggtggaaatgacgaaccagccagtgaaaatgctgctgagggtaaagatgcagatggtaccaaatcaagtttaattttatctgttggtgaatgtttcacattctgatttatgattaaaccattttttttcagctaaaggagtcccagatttttggcttactgctatgaaaacaaatgaagtgctttctgaggaggtatagtatggtttacttttgtgttgttttttaggtgcattgcagtaattgttgattgtgttattgctttattagatccaagagcgtgacgagcctgctttgaaatatctgaaagatatcaagtgggctagaattgacgatcctaagggtttcaagctggattttttctttgatacgaaccctttcttcaagaactctgtcctaacaaaaacgtaccacatggttgatgaagatgaaccaattttggagaaagcaattgggtaagttgtttcatcctctgttgaaacctgtaactgcacgtgttgttaaaactaaccatgttggcatgttatgtgcactgcaggactgaaattgagtggtatcctggtaaaaacctgacacagaagattctaaaaaagaaacccaagaaaggttcaaagaatgcaaagcctattaccaaaactgaagtctgtgagagcttcttcaactttttcagtcccccgcaagtacccgatgatgatgaggacattgatgaagacactgtatgttctattttgatatttgacatgcatttgttcaatgatatcatatttggtgtgctttggtagtaaacttgttccttcaatttatgataggctgatgagcttcagggtcaaatggaacatgattatgacattgggtaagtactagtcattgcctgccacatactaatgttctatccgtcatgttgataagctcttatggctattctgatgatatttttggtcggaaattacttataggaccaccataagggataagatcatcccacatgctgtttcctggtttactggtgaggctgtgcaagccgaggattttgacgatatggaggatgatgaagaagatgatgaagacgatgatgaagatgaggaggaggaagaagaggatgaggatgaagacgaagacgatgaggaagaaaaaagcaagccaaagaagaaggtaacttcactatgtcatagaacctatttctgtagcatcattctcctatttagccagtttctaatacattgcttttttgattgtctggacagtcggcaggcaaaccgaaggtacatgctttacaccaaccttaaacgacttgacatcaattttccttgcttcgagtgttataatcttatagctcatagtacattctccaccagctaccatcgaagggcggggcacaaggaggtgctgatcaaccagcagattgcaagcagcagtagaactgttgtggttcacagcgccacgtgagctgtttgttattttgttgatgcagtattttgcgttgaactgcccaggaaattattggttggttgtgcacgggtgaggtttcgttgctggtatatgttacccgtggttttattggcgaagttgtgaggcctgtctggaacatctatattagagtattattatgttttagttatatgtaatcggtttattaagtttgtgtaattatctggaatctgccggtggaacttttactagtattcatttgagccttatggaaaaaaaatgaaatatgtcttatgg</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0149400, RefSeq:Os06g0149400