Os06g0168500

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Revision as of 09:06, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0168500| Description = Similar to Syntaxin-like protein (Fragment)| Version = NM_001063460.1 GI:115466651 GeneID:4340257| Length = 3279 bp|...")
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Gene Name

Os06g0168500

Description

Similar to Syntaxin-like protein (Fragment)

Version

NM_001063460.1 GI:115466651 GeneID:4340257

Length

3279 bp

Definition

Oryza sativa Japonica Group Os06g0168500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:3444035..3447313

Sequence Coding Region

3444249..3444407,3444516..3444581,3444653..3444733,3444832..3444909,3444989..3445014
,3445118..3445178,3445372..3445414,3445507..3445580,3445702..3445790
,3445896..3445944,3446180..3446236,3446318..3446434,3447108..3447125

Expression

GEO Profiles:Os06g0168500

Genome Context

<gbrowseImage1> name=NC_008399:3444035..3447313 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:3444035..3447313 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaggaaccttctcacggattcgtttgagctcagcaaagtggaccaagcccctgcaaatgttgatatcgagctagggttgcagggtggcatgtccagttctgcgcagcctggctttgaaggcttctttgaacaggtcagggagatcgagaagctacatgaaacattgacaaagttactgaaggaccttcagaactcaaatgaggagtcaaaaattgttaccaaggcatcagccatgaaagagattaaaaagcgcatggagaaggatgtcaatgaggtgacaaaaactgcacgtctggcaaaatcaaaagtagagaagttgaataaagacaatgctgcaaacagagaaaaaccaggcttcggtaagggttcgggagtggacagatcccggactacaaccactgtctcattgacaaagaggttgagagaacggatatctgagtttcagacattaagagaggcaatccagaaggaataccgggatgtagtggagcggcgcgttttcactgtcactggcgagcgtgctgacgaagagacaattgacaagctgatagaaactggggacagtgagcaaatttttcagagagctattcaggaacaaggccgtggaagggtgcttgacactctccaagaaattcaggaacggcatgatgcagtgaaagagatagagcagaagcttcttgagctgcaacagattttcctcgacatgtccgtgttggttgaggctcaaggcgagatcctggacaatatagagtcacaggtttcaggtgcagctgaacatattcagactggaacaaacctcctccagaaagcaagatttctgcagaagaacacacggaaatggacctgcatagggattgtcatcctcctcataatcatcctcatcgtcgtcctctccttaaagccgtggtctaagtag</cdnaseq>

Protein Sequence

<aaseq>MRNLLTDSFELSKVDQAPANVDIELGLQGGMSSSAQPGFEGFFE QVREIEKLHETLTKLLKDLQNSNEESKIVTKASAMKEIKKRMEKDVNEVTKTARLAKS KVEKLNKDNAANREKPGFGKGSGVDRSRTTTTVSLTKRLRERISEFQTLREAIQKEYR DVVERRVFTVTGERADEETIDKLIETGDSEQIFQRAIQEQGRGRVLDTLQEIQERHDA VKEIEQKLLELQQIFLDMSVLVEAQGEILDNIESQVSGAAEHIQTGTNLLQKARFLQK NTRKWTCIGIVILLIIILIVVLSLKPWSK</aaseq>

Gene Sequence

<dnaseqindica>2907..3065#2733..2798#2581..2661#2405..2482#2300..2325#2136..2196#1900..1942#1734..1807#1524..1612#1370..1418#1078..1134#880..996#189..206#gatttttcgtttcctttcccagcgacgaaacttcctatcaaaaccgcggttttataccggttctagccgccaagaaccccaacccccgccacccggcgaacgcgccctgcgagaaaatttggtgttttggggcctttttgaggtgggaattctgagaattctgagggttcttgcctgttgctccgaggatgaggaaccttctcacggtatgattgatcgccttgttgcctgttatgagttttatagttgtgttgattggttgttcttgtggtgattttgggggtgaaaattttgagttctcggttctgatggtggttttttttttttattattttgccggtttctgattattgaggatcgttttgtttgctgaagccttttgaatattttaattttggtgaacttcatgttatatggactcctggtttatgtttggatcgatcttgatcgacttcgtgacaggatcggatttggtgttcttactgatatctgtggaaattattgagttgttaagaaatatctttttaagacttttgtcaagacatgattatcataaatatcttgatgaccttttgtttttttttaaaaaaaaatcttgacaggattacgcggtgaattttgttcctgattttgtattagatatttgtttgaaacgaaaaggcaggaggattgccttttatatgttaattaatagagcagagcagaatttgtattagatatgctattatattttgcaagactatatatttggaatgaccacagtaccttcttgacccaagttttgattgcaagcctgatataatacttttttttatctctttcaaattttgagaaaaatgtgaaactaacagcatattttgtggttcttcaattttacaggattcgtttgagctcagcaaagtggaccaagcccctgcaaatgttgatatcgagctagggttgcagggtggcatgtccagttctgcgcagcctggctttgaaggcttctttgaacaggtgcgttcaagtttcggaatatcaacatagctactcagaactttcttaagtgattgaaatggttccattcacaatattcaggtcagggagatcgagaagctacatgaaacattgacaaagttactgaaggaccttcaggtgagctgcaatatcaaattggacctgttgctgaatttaaattgcagatattgaacatgcatcaaatctcagtagcacctacagaatatagtaatatacaagtgtgacgatgtgatacgtgtattccagatgctgttaaattaatagtgattaatttccctgaatttgtttgaatgatttttttattcaacaatgttactcttcatctctctaaaagtctgcgaatttcatgtagaactcaaatgaggagtcaaaaattgttaccaaggcatcagccatgaaaggtacaatacgggattttggttctttcctgcaaattggatagcttatggatacttgcgttgcttcaattttgcatcactaatttgattcctcttttcaaactgtagagattaaaaagcgcatggagaaggatgtcaatgaggtgacaaaaactgcacgtctggcaaaatcaaaagtagagaagttgaataaagacgtgagtaaattttctctcaatatttttttcccaatggtacatcattaagtacctactactttatctttattacttcctacagatttgatatatgccactttgattttcttttctgttacagaatgctgcaaacagagaaaaaccaggcttcggtaagggttcgggagtggacagatcccggactacaaccactgtgtatgcatcctacattcattctcttgcttctttcttgtcctttttgttatgtttttcacatcactgacttccagttgataatcttattgcagctcattgacaaagaggttgagagaacggatatctgagtttcaggtaccgccttttcactaagaatttcatcaattattgcacacaatctacctgatagaaattatttagcacacatggttgttaattcaccaactcatgtactctgaaataagcactaagcatcaggattgtacctatattgttcagtttgtaaaatgggcgtggttgttatccttactgtgaactatttttgcagacattaagagaggcaatccagaaggaataccgggatgtagtggagcggcgcgttttcactggtcagttatgttaaattctcaacatggtatcaggatttctatttgaattgcactgatagccttactcttgtaatcatccattgtgtaaaattatccaaaacagtcactggcgagcgtgctgacgaagaggtaagaagtatattaacttcaaatcatctgttaacaaatctgcatatggtgtgttgcttacacctggccaaattttcagacaattgacaagctgatagaaactggggacagtgagcaaatttttcagagagctattcaggaacaaggccgtggaagggtaccgattcttttggcccctcttatgataattctaacatagaaagcttaatgccgaaaaaaaaaacatggtttaacctgaatttatggcttttgcaggtgcttgacactctccaagaaattcaggaacggcatgatgcagtgaaagagatagagcagaagcttcttgagctgcaacaggtaatgaataagcaatcttccagaaaatcgaagctccaaatactgtgcttaccttgcaattgtgaatgcagattttcctcgacatgtccgtgttggttgaggctcaaggcgagatcctggacaatatagagtcacaggtaaaattttacatgccatttcagaggatctttgctactcctttgtgagccacatttttgttctgacttctgaatccctgaacctatgacctatctatctctcttcaggtttcaggtgcagctgaacatattcagactggaacaaacctcctccagaaagcaagatttctgcagaagaacacacggaaatggacctgcatagggattgtcatcctcctcataatcatcctcatcgtcgtcctctccttaaagccgtggtctaagtagaaaaacctgcatctcagaagcatcatgttcatgtcgattttggctggcaatgtttatcttttgtgcagttctacttctagttgtgtatatgccacggtgtggtagtgcgtcatgtacattctctgaaattttgggtgcgaacttattcagttctctgtacttcaaataatgaacatgcagcttgatcatacataattttgctcataaactttct</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0168500, RefSeq:Os06g0168500