Os06g0175500

From RiceWiki
Revision as of 09:06, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0175500| Description = Epsin, N-terminal domain containing protein| Version = NM_001063485.1 GI:115466701 GeneID:4340282| Length = 6495 bp|...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os06g0175500

Description

Epsin, N-terminal domain containing protein

Version

NM_001063485.1 GI:115466701 GeneID:4340282

Length

6495 bp

Definition

Oryza sativa Japonica Group Os06g0175500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:3800273..3806767

Sequence Coding Region

3800587..3801027,3801404..3801513,3801617..3801692,3801766..3801918,3802097..3802168
,3802251..3802331,3802945..3803010,3803126..3803191,3803286..3803336
,3803438..3803521,3803997..3804097,3804197..3804338,3804829..3804926
,3805203..3805272,3805385..3805486

Expression

GEO Profiles:Os06g0175500

Genome Context

<gbrowseImage1> name=NC_008399:3800273..3806767 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:3800273..3806767 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcaggagttggcactcagccgacgagcctcaggaagtatcttggagccctcaaggacaccacaactgtgagcttggcaaaagtgaacagtgattataaggaattggatattgcaattgtgaaggctacaaaccatgttgagcgtccatcaaaggagaagtacataagagaaattttttattccatttctgcttcaaggccacgagcagatgtagcttactgcatccatgcccttgcaagacgtctttccaagacacgcaattgggcggttgcattgaagacattaattgtcatacatcgcgcccttcgagaggtcgatcccacttttcgtgaagagcttatcaattatggcagatctaggtcccatatgctaaacttggcctactttaaggatgattctagtgcaggagcttgggatttttctgcttggatacgcacttatgctttatatttagaagagagacttgaatgtttccgagtgctgaagtatgatgtggagacagatcctccgaaaactcgggatcttgaaactggtgatttgcttgatcatctgccagcattacagcaacttctttttcggctccttgcttgccagccacaaggggcatcatcttacaatgtcataatccagcacgcactttcaatggttgctctggaaagtgttaagatctacactgctattagtgatggtacaattaatctggttgacaagttctttgagatgcaaagaagtgatgctgttagggcacttgatatatacaaaagagcaactaaccaggctgaaagactatcagagttttatgaagtgtgtaaaacgatacacattgggcgtggtgagaagttcttaaaaatcgaacagcctccagcttcattcttagtaaccatggaggaatatgtgacagaagctcccactgtagctcaaaaagataaggtactggcaatcgaatacaagaaagaggcagaggaggaagaaaagccggcatcgcctcctcccgctccagagccagaaccagaacaagaaccagagccagagcctgaaccagtaaaagaggaagcacctaaagaggagccaacagatttgctgggtctgaacgaaccgaaccctgccgcagccgagatagaggagaagaatgctttagcccttgccattgttccgatagatgatgtacctaaagttgcacctgctcaaaatggagtcactggctgggagctggcccttgtcaccacacccagctcaaacgaaactgctattacttcaagcaagaagctggctggtggactggacttgctcacgctcgacagcctgtacgacgacgcgaaccggagagcgagccagccgacgagctacaacccatgggatgtcaaccccggcgtcgccggcgccggcgccgccccgatgatgcagcagccgatgatgcacgacccgttctacgcctccagcggctacgcggcgccgcacaacgtgcagatgaccgccatggcgcagcagcagcaggccttcatgctccagcagcagatgatgatggccgccgccgccgccgccgccgcggcgcccccgcctcaggtgttccaccaccaccagcagcagcagcagcatctccaggccaacccggcgaacccgttcggcaacccgttcgccgccgccgcagccgcccaccacccttacggcgccgccgccgccgccggcaacggctacacggggctcatatga</cdnaseq>

Protein Sequence

<aaseq>MAGVGTQPTSLRKYLGALKDTTTVSLAKVNSDYKELDIAIVKAT NHVERPSKEKYIREIFYSISASRPRADVAYCIHALARRLSKTRNWAVALKTLIVIHRA LREVDPTFREELINYGRSRSHMLNLAYFKDDSSAGAWDFSAWIRTYALYLEERLECFR VLKYDVETDPPKTRDLETGDLLDHLPALQQLLFRLLACQPQGASSYNVIIQHALSMVA LESVKIYTAISDGTINLVDKFFEMQRSDAVRALDIYKRATNQAERLSEFYEVCKTIHI GRGEKFLKIEQPPASFLVTMEEYVTEAPTVAQKDKVLAIEYKKEAEEEEKPASPPPAP EPEPEQEPEPEPEPVKEEAPKEEPTDLLGLNEPNPAAAEIEEKNALALAIVPIDDVPK VAPAQNGVTGWELALVTTPSSNETAITSSKKLAGGLDLLTLDSLYDDANRRASQPTSY NPWDVNPGVAGAGAAPMMQQPMMHDPFYASSGYAAPHNVQMTAMAQQQQAFMLQQQMM MAAAAAAAAAPPPQVFHHHQQQQQHLQANPANPFGNPFAAAAAAHHPYGAAAAAGNGY TGLI</aaseq>

Gene Sequence

<dnaseqindica>5741..6181#5255..5364#5076..5151#4850..5002#4600..4671#4437..4517#3758..3823#3577..3642#3432..3482#3247..3330#2671..2771#2430..2571#1842..1939#1496..1565#1282..1383#ctccgctgcggaaaggctctccctttccgagctcttcccgagctctcctgcttgttcttggggccggggaagattcttgctgctctgaatcagaggtgggtgctgatacctgcttgctcttcttgttcttgttcgtcttaatccgagctcgtttggattgggagagagggctagcgttgtaggcggattgatttttgtttgggttgttgggtagtggcaagaacgtttgcttttggtgattttggcggctcgagctctgttgaaagttacttttttttttgggtacatggggtgtcgtgaaagtgaatgttaatatattgtttgtttgtctgtttgttcgtttgttcgtttgttagtttgttttcccgagttgaatttgaaattttggatgttattaatagtggtgttcttgccgttctgacggttgctgctgggcttgtagtctctgatttgtggctgcgaaattggatccaatcttttttttgggggaaaattggtgagttttgggatcaaattaggatcttgtgagaatataagcaggtgaactcttgcattcttgcccgcttcaatccccaaaactcgtgtttgctgctgtcctggtatttttgacaaagttctattctgacgtttgaattgtccattgcttggatttaaagcttggaatttttcttctttttttttctcgaataatattcagcttttaggtgctttgccggagaattcggacgcgattcttcccttggccaatcccattgagagatgccattcatgtttctgtcgatccatttctttttttgtttgttttctccagtaacctttctgcaatcacaacagctctactttttttctctatgtggatgtccttgtgaatttgctctgtaggtgagtagtgtctgccttgctggacattgatgtgattgatggagcatctgttgcctaatcattttagctcaatttgatctgagctggcgttcagtacattttgaaagtttatccgtacagagatttcggcgctgtacgttgcctgtttaatcacttctgtatacagctcatttggatccaattcctttagctgatgccatctggatccattgttatatcctaaacagtttgtgatccaactgtttcgttgctgtttgttatttctggttgatgaatttgaagtgtagatttatttggatggatcaagatttatttagagcagataatctcatttgtagtatgtttggttctttgctgcatattcaggtcaagtagtatatcatctgtgagttaaggaggatggcaggagttggcactcagccgacgagcctcaggaagtatcttggagccctcaaggacaccacaactgtgagcttggcaaaagtgaacagtgattataaggtcgaaaattctatcaatcctctgaagaatgtttggaaattctcatgctcaattgcttactgttatatgctttactccgccgcgggcttagcattgtcttttttcaaaacaggaattggatattgcaattgtgaaggctacaaaccatgttgagcgtccatcaaaggagaagtacataagaggtggcatatcctgtctcttagctgaaagcttgaaacactagtgccagttcatagctgcatcttttcacttgtgttaatcttttttaattttcattgttatatataattgaatatatagtgtagaaaacaatgaattgtcctgctcctgcttaaaattcagtgattttttgttatgtagtttttgttgaatgaaatggagtattatattgattgtgcactaatttaccttcagactgtcaaaacttgcctcatattcatttgtttattggtttgcagaaattttttattccatttctgcttcaaggccacgagcagatgtagcttactgcatccatgcccttgcaagacgtctttccaagacacgcaattgggcggtatgtaccttttctataagactttagtgttctaactagaatgtagtagtgcttctttctgtccaaggaaccattttacaccaagtatcttctcgttctgtctaaggagcctttttgtaacattttaaaattttgcatttctctgtagtttatggagctatgttaaaatggactttgggaaactatgaaaatatttgttggcattagcttcctttgttactgtctccattttctttgtaaaacagatgggtctacgagtttagtcctttttctttagagtagttacaaaatggttttttgtttaaatgcatggtggaattgatggtttttgaactttttgaaggattgccaaactgctatgtgattagaaggattagtttgcatttaacattatttgttttgttttattgatagtgcttttcctgggtgatgcactgtaaaaaaagttataaacttatgaatattctttgcttcaatatttatacctcaggttgcattgaagacattaattgtcatacatcgcgcccttcgagaggtcgatcccacttttcgtgaagagcttatcaattatggcagatctaggtcccatatgctaaacttggcctactttaaggatgattctagtgcaggaggtactaattgacattttattactagtgttgtcacttttatagctgtattagacattctaactctgaactataatgactatttactcttatcttgttcagcttgggatttttctgcttggatacgcacttatgctttatatttagaagagagacttgaatgtttccgagtgctgaagtatgatgtggagacagatcctccggtatgtaatccaattactactcttgcttatgcgaggttttatcaaatttttatttctttaaaacttaaatgtaattttgctggaaggaaactgtgtttaaacttcataactaccttgtaagttccaattttaaggtttcctccttttctcctggaagactctgaggaagtagattgtggaagtagatctatcaccttagaaaactctaaaggagagaaagtgaatttcaaaaccatagttaatcccccttggaaaggagccctagtgcaccacatggaagtttccgaactacagaaggttacctattgctagagaatatccagatatcttccagaagagttgacaggcatgccaccgcatagggacatggaacattgatttatgtaattgaaactttatcatgagagatgagattacaagtgccatgttgccaacggtattctttctaactttctgaaaattctggtctctgcagaaaactcgggatcttgaaactggtgatttgcttgatcatctgccagcattacagcaacttctttttcggctccttgcttgccaggtaattagtttttgcctacatatgatttgaaatttcaccacattccatcttcatgttccactgtcaggttaaatttgaattactgaatattatttttgtagccacaaggggcatcatcttacaatgtcataatccagcacgcactttcaatggtaagtagcatgagttagcatgcttgtttcattttaagtgcacaacatgatggtcttggcatgaatgctgactttgcttgtgcattactggaaggttgctctggaaagtgttaagatctacactgctattagtgatggtacaattaatctggttgacaaggtgagttttcttattagttattctagtcattccagataagtttgtaaaatctgctattcgctagcgatatttctttacttttctcatctaacctacggattattctctattacagttctttgagatgcaaagaagtgatgctgttagggcacttgatatatacaaaagagcaactaaccaggtgaagttctgtccctctactgttgatccattaatgaatttgttcagtggattattttcacttgcatgtagcaataaaaatcaaggttctttcttaagtttaattaattaaggacttgggtatgtgttagggcttcagaaacttagaagctgatcgattgaagaatgtatgagataattcacttaattgctgtgaatagatcaaatctatttacactattatgttgttttattatccctgaccagtttttccccccttcaatgtttgattcatgacaaagtgataaaaaacagtaggacagaggcagataacaatccatctgagcatcttgctttcctccatggtctctcctttgatcgaggattagctatgtgcacttttaagcaaccttgtctctaattaaaatttaggtatcatatctgtgatggaatatgaaattaaacttagagcacaaggtttttttttcacttcagcatcatcagctctgttgatgttgatctgtctaaaacagaagttctgaaccactgatattaatcgttgaattatgttgaaataagaacatttagggcactgttgctgcttcaccttttaatttcttaaatttgttgcacaggctgaaagactatcagagttttatgaagtgtgtaaaacgatacacattgggcgtggtgagaagttcttaaaaatcgaacaggtctgacagatattcgatttgcatgtatttgttgtttgttttccattttagcaagctactgattatactgaaacttctgcagcctccagcttcattcttagtaaccatggaggaatatgtgacagaagctcccactgtagctcaaaaagataaggttcgagaaatgttgaaacttgctgatgtttagagctcaaattaatgtgttgattgattgtatcagtacattataaatcgagaagacaatgaatctagttagaaccatcttatgcatgattttctgctcttcaggctccttattgagtttgcttatcacacatcttatctgtgtttaggtactggcaatcgaatacaagaaagaggcagaggaggaagaaaagccggcatcgcctcctcccgctccagagccagaaccagaacaagaaccagagccagagcctgaaccagtaaaagaggaagcacctaaagaggagccaacagatttgctggtaacattctgtactactcacaagaggccactaatcctgcattgtcatgctaataactcaatttctctgccagggtctgaacgaaccgaaccctgccgcagccgagatagaggagaagaatgctttagcccttgccattgttccgataggtaaaattccccacgaacgaaaaccgttcaattcttttgtctccactagaagttgatcggttgtaagacatgcttctttactgttcttgcttttctgtggcagatgatgtacctaaagttgcacctgctcaaaatggagtcactggctgggagctggcccttgtcaccacacccagctcaaacgaaactgctattacttcaagcaagaagctggtactgaacctgaacattttaccttgacatgtagcgaaattccagatagacgcggcaacactagcatcatccttagcttgaaatgccagcgaattttcagataaatgcagcaacagtagcatcattcttaccttgaaatgcagcaaattttcagacagatgaagcaacagtagcatcattcttaccttgaaatgcagcaaaatttcagataaatgcagcaacagtagcatcatttttaacttgaaatgcaacaaaattttcagacagatgaagcagcactagcatcattcttaatttgaaatgcagcaaaattttcagacagatgcagcaacaacaaaagctaaccatctctgaaactctgaaatcttttcttcaggctggtggactggacttgctcacgctcgacagcctgtacgacgacgcgaaccggagagcgagccagccgacgagctacaacccatgggatgtcaaccccggcgtcgccggcgccggcgccgccccgatgatgcagcagccgatgatgcacgacccgttctacgcctccagcggctacgcggcgccgcacaacgtgcagatgaccgccatggcgcagcagcagcaggccttcatgctccagcagcagatgatgatggccgccgccgccgccgccgccgcggcgcccccgcctcaggtgttccaccaccaccagcagcagcagcagcatctccaggccaacccggcgaacccgttcggcaacccgttcgccgccgccgcagccgcccaccacccttacggcgccgccgccgccgccggcaacggctacacggggctcatatgatgatcatcatccagctccggcgatgtcggtcgtcgtcgcactacttccaatgtcgattcttttttggctggaaaaatttgtagctttctctcattgttgatggtttgtagcacacacaggtagaagaagaagaagaattcggtggtgttcgtccgattcggacacgtcacacgtaggtgcttggggtaatgtatgtacgtatgcatgtatgtatatgggtatgggtatttttggtatttcttcatgtgggtgggtgattcgggataagattaattattggattattcatggacattgatcgagtacgattacat</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0175500, RefSeq:Os06g0175500