Os06g0274500

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Revision as of 09:14, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0274500| Description = Similar to SERK1 (Fragment)| Version = NM_001063911.1 GI:115467553 GeneID:4340743| Length = 7836 bp| Definition = O...")
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Gene Name

Os06g0274500

Description

Similar to SERK1 (Fragment)

Version

NM_001063911.1 GI:115467553 GeneID:4340743

Length

7836 bp

Definition

Oryza sativa Japonica Group Os06g0274500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:9314992..9322827

Sequence Coding Region

9315159..9315255,9315358..9315490,9315592..9315663,9315777..9315920,9316134..9316205
,9316403..9316462,9316568..9316821,9318124..9318465,9320185..9320564
,9322051..9322419

Expression

GEO Profiles:Os06g0274500

Genome Context

<gbrowseImage1> name=NC_008399:9314992..9322827 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:9314992..9322827 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagccgcccttcttcctcctcctgctgctgctcgtggtctcctcctcctccccttccgccgccctcctctccgccaagggcgtcaacaacgaagtgcaagctctgattgtgatcaagaacctgctcaaggacccccatggcgtgctcaagagctgggaccagaactccgtcgacccctgcagctgggccatgatcacctgctccccggatttcctcgtcactggcctggaagctccaagccagcatctctctggcctgctctcaccaagcatcggcaacctgaccaatcttgagactgttctcctgcagaacaacaacataaccgggccaatcccagcagagattggcaggctggagaacctcaagacgcttgatctctccagcaacagcttctatggcgaaatccccagctctgtgggccacctcgagagcctccagtacttgaggctcaacaacaacaccctgtctggtccattcccttctgcatcagctaacctgtcacaccttgttttcctagatttgtcatataacaacctgagtggcccgattccagaatcattggcaagaacttacaacatagtggggaatcccctcatctgcgacgccaacagggagcaggattgctacgggacggcgccgatgccgatgagctacagcctgaacggctcgcggggcggcgcgctgccgccggcggcgagggacagggggcacaagttcgccgtcgcgttcggctccaccgccggctgcatgggcctcctcctcctcgccgccggtttcctcttctggtggcgccaccgccgcaaccggcagatcctctttgacgtcgacgagcagcagattgagaacgtgaacctggggaacgtgaagaggttcagcttcagggagctgcaggcggcgacggaggggttcagcgggaagaacatcctggggaaaggagggttcgggaacgtgtacagggggcagctccccgacgggacgctggtggcggtgaagcggctcaaggacggcaacgcggccggcggcgaggcccagttccagacggaggtggagatgatcagcctcgccctccaccgcaacctcctccgcctctacggcttctgcatgaccgccaccgagcgcctcctagtctaccccttcatgtccaacggcagcgtcgcctcccgcctcaaagcgaagccggcgttggagtgggggacgaggaggaggatcgcggtgggggcggcgaggggcctggtgtacctgcacgagcagtgcgaccccaagatcatccaccgcgacgtcaaggccgccaacgtgctgctggacgaggcgtgcgaggccgtcgtcggcgacttcgggctggccaagctgctggaccaccgggagtcgcacgtcaccacggcggtgcggggcaccgtcggccacatcgcgccggagtacctgtccacggggcagtcgtcggaccggaccgacgtcttcggcttcggcatcctgctgctggagctcgtcaccggccagacggcgctcgagttcggcaagtcgtccaaccacaagggcgccatgctggactgggtgaagaagatgcagtcggagaagaaggtggaggtgctggtggacaaggggttaggcggagggtacgaccgggtggaggtggaggagatggtgcaggtggctctcctctgcacccagtacctccccgcccaccgcccccgcatgtccgacgtcgtccgcatgctcgagggcgacggcctcgccgaccgctgggagaaggcctccggccactccaccgccgccgccgactccctctcccactcccaccgcacctcagacccggcgccgcccgccgccgacttcgccgccgccttcggccgctgcttctccgacctcaccgacgactcctccctcctcgtccaggccgtcgagctctccggccccagataa</cdnaseq>

Protein Sequence

<aaseq>MEPPFFLLLLLLVVSSSSPSAALLSAKGVNNEVQALIVIKNLLK DPHGVLKSWDQNSVDPCSWAMITCSPDFLVTGLEAPSQHLSGLLSPSIGNLTNLETVL LQNNNITGPIPAEIGRLENLKTLDLSSNSFYGEIPSSVGHLESLQYLRLNNNTLSGPF PSASANLSHLVFLDLSYNNLSGPIPESLARTYNIVGNPLICDANREQDCYGTAPMPMS YSLNGSRGGALPPAARDRGHKFAVAFGSTAGCMGLLLLAAGFLFWWRHRRNRQILFDV DEQQIENVNLGNVKRFSFRELQAATEGFSGKNILGKGGFGNVYRGQLPDGTLVAVKRL KDGNAAGGEAQFQTEVEMISLALHRNLLRLYGFCMTATERLLVYPFMSNGSVASRLKA KPALEWGTRRRIAVGAARGLVYLHEQCDPKIIHRDVKAANVLLDEACEAVVGDFGLAK LLDHRESHVTTAVRGTVGHIAPEYLSTGQSSDRTDVFGFGILLLELVTGQTALEFGKS SNHKGAMLDWVKKMQSEKKVEVLVDKGLGGGYDRVEVEEMVQVALLCTQYLPAHRPRM SDVVRMLEGDGLADRWEKASGHSTAAADSLSHSHRTSDPAPPAADFAAAFGRCFSDLT DDSSLLVQAVELSGPR</aaseq>

Gene Sequence

<dnaseqindica>168..264#367..499#601..672#786..929#1143..1214#1412..1471#1577..1830#3133..3474#5194..5573#7060..7428#gttagttcgagcgcacacacacaatcacacattgcacgcgcagacgcagccactgcttcttcttcctcctcttctcccaggaaagagctcacctgacctgaccacctgaggttgtagttgctggtttgcttgctagcttcgtcgtctcctcctacctgagctcagcaatggagccgcccttcttcctcctcctgctgctgctcgtggtctcctcctcctccccttccgccgccctcctctccgccaagggcgtcaacaacgaaggtaaggttcagttcagttcatcccttcctctctcttgtttcctctgatcgtttcttgcatttgggcgtgtgctgattgattgattggctggttgattggcagtgcaagctctgattgtgatcaagaacctgctcaaggacccccatggcgtgctcaagagctgggaccagaactccgtcgacccctgcagctgggccatgatcacctgctccccggatttcctcgtcactggcctgtatgttagctctcaccttccattgcttcacagtatcaatctcaatctcacctctcttctcttctctgctgcttgtctgaatactctgaatgttttttcagggaagctccaagccagcatctctctggcctgctctcaccaagcatcggcaacctgaccaatcttgagactgtgtcagtagtgttctttcttcttcttctacttcacatcaatccatagccttatcatggtcagttcttgtacttaaacagagtgtctcttttctttgatgtgctggtgggtgcagtctcctgcagaacaacaacataaccgggccaatcccagcagagattggcaggctggagaacctcaagacgcttgatctctccagcaacagcttctatggcgaaatccccagctctgtgggccacctcgagagcctccagtacttgtgagtcgagagctccactgttcaaagcctctgaatactgttccatttattttgtagtaaagataattataagcacactgttcttgattatgatatctagatatgtagcagtatcatatcatatctacacatagttattgtggttgttctccgtttttttgttgccatgttaattaagtttgagttaactctgttgctgtgaaatttgatcaggaggctcaacaacaacaccctgtctggtccattcccttctgcatcagctaacctgtcacaccttgttttcctgtgagtaaattcatctcagttttgggttgttgcaattaaacagttcgattttgtctcaacctgcttacttgtgtcatttattcagagatgctttgtcttgccctgctctttcttgagctatattaacttattcttttaagtgtactattcagtttggtttgtctcatcactctgcatacactcgtgttcttcttcagagatttgtcatataacaacctgagtggcccgattccagaatcattggcaagaacttacaagtaaggctgcagtttcaagttcatcaattcttccaacaagaagaaaaaaaatcttccaattttttttggttcatcaacaattgcatggttttttttttcttgcagcatagtggggaatcccctcatctgcgacgccaacagggagcaggattgctacgggacggcgccgatgccgatgagctacagcctgaacggctcgcggggcggcgcgctgccgccggcggcgagggacagggggcacaagttcgccgtcgcgttcggctccaccgccggctgcatgggcctcctcctcctcgccgccggtttcctcttctggtggcgccaccgccgcaaccggcagatcctctttgacgtcgacggtaaacctcagtcttttctcgcagctaacctacctgcatttcatcatccataattcttagagaaattattttcaggcctttgtctagagttttattgtggattatttgctccacgcttctttaaaaaaacgatttttcgtaaaaaaaagactatttattctaagctttttggtaccttgtaataccttaattttacgctagggccttcttcgaagtagggatgaaaatggagcggatagtttccgtccgctccggacaaaaacggatacggatacctttcggatcggataattctcggatatttcggatacggatacgaatacggatattttctcccggatacgaatacgaatatggtatcaggtttccgccggatacggataataattcggatatccggtgaacagtgctattcggatatccgcaggacccatgagacataccctatttctttctaactctataaccttcaatatacctttatagattttaatagtagtttatctcttaacactagtccatactattaatattatttaaattttaaaaaatatttataaattatacctcattttatataaaatgagctaattatatatgttgatatttatttctattagaagttgagttggttttcgtgttccgagaaaaatttgtttccgtattcgtgtccgatcatattcgattcttattcgtattcgagataatccgtatttgtttccgtattcgttttcgtatccggtaaaaaatatgaaaacgaatatggtatgaacattatccatccgtatccgctccgttttcatccatacttcgaagtcgatggtaacctcaatctttttccaaaacaacctgcatttcgtcattaattccaagagaaattattgtcagcttttgtctaagatttttggtacggattattcgctccatgcttcttagatttttttttaaaaaaaacttctgctgtcatattcacctgttctaaactattgtgaagtttatttctcaaaatattgatttattgtgttaaataagtataaaaaatctgcctcaataattcacgcaaaaatcgtatttcaaatagggtgtacacaacattttaatataaaatttgatatctcatgacatctgaataataaaaacccaccaacattcacgctagtggtaccttccaaaggaccataaattaaatcactccaattttgaattcagacaaggggtattacatctctaataaatttgagtattaatgttaatagactagtgttgttggttttggttgggaaaaaaaataaaaaattgcagagcagcagattgagaacgtgaacctggggaacgtgaagaggttcagcttcagggagctgcaggcggcgacggaggggttcagcgggaagaacatcctggggaaaggagggttcgggaacgtgtacagggggcagctccccgacgggacgctggtggcggtgaagcggctcaaggacggcaacgcggccggcggcgaggcccagttccagacggaggtggagatgatcagcctcgccctccaccgcaacctcctccgcctctacggcttctgcatgaccgccaccgagcgcctcctagtctaccccttcatgtccaacggcagcgtcgcctcccgcctcaaaggtaaccaaaccaaattcgtaaattaatatttctagtactgtatctatttttcttcttaagattatgaattgctcttttttatcctaaaatatataacaatccagtacgagatgagatacatcataataatatgaattcaaacagattttctgtttagattcgtgatgttaggatatgtctcatctcagtactaagttgctatattttactctctctattttaaaacaaagtaaaatagtacgagatgcgatacattataatactataaattgaaacagacattatgttcagatttgaagtattatgatatatcacatctactactagaattctatattttaagagataaattttaccatttttgagaggtatgaaaatgtaccaaaatttattgcaaatttccgtaactcctaggtatatataccaaattttacactgaaaaatatagtacatctcaatatctcattaagaacagtaaaataactcattttgagagagaggcagtacaagattcagacaatgaccacggagaaagtccggtagaattcctccaatctgctgcagctcgaatgttctttactcgatatgacagcagaaatctgagtggaacagcagcagcagcatatgttctttgctggatttttcatatcataccggacctaaaagagaggtgcagaatcgaaagactgaagctttcagttcaggccggcaaagaaacaagtggagcatgataagagctcggaattggattccattgccctgaaagataattaaaaaaaggagactaaatttatctatcacgacgagaagagaagaagaggagaatgtgattcccaatcagacacaaaaaaaactccagctttattccttcctttccgactgcactcacccactttgaatctctgaccaaatgatgatgatgaattgatgtggtttccctttcaaaattaacttgcaaacaaattgtgacgacgacagacgccattgatgtgcttccgttcgctgagggagctaggatgtgattctcaattagatacaaccaaaaaaaaaagaaaaatctttggtttattccttcctgtccgaactctgaaactctgaattctctgaccaaatgacggtgatcggtgcatgaacagcgaagccgccggtttcaatccctgaagtagaatgtgattctcaatcagacacaaacaaacacaaaaaagttctttcctttatacctttctgtccgaatcactccctcaatctgaaactctgaatttctctgaccaaatgatggtgatcggcgcctgaacagcgaaactgctggtttcttttttttttttttcgaacggtcggaccgttgccaacgttttatattaagaagaagatatcccattttaaggagaaaacaggatcaaaccttacaatgctcagttaattagggaaaactgagcgaaaaccacagctacaacaccacaccaacagctaacctaacttaagctaccacgacggagcccgaaaaaccgccggtttcaatccctgaagtagagtgtgatacccaattagacacaaaccaacaccaaaaatctttaccttatacctttcactccctcactcactctgaaactctgaaactctgaccaaatgatgaatgatgacgatgatgaactgacgacgcggttccaaaaactaacctgggcagattaatgaaacatgctactataaaatcgcatgcagcgaagccggcgttggagtgggggacgaggaggaggatcgcggtgggggcggcgaggggcctggtgtacctgcacgagcagtgcgaccccaagatcatccaccgcgacgtcaaggccgccaacgtgctgctggacgaggcgtgcgaggccgtcgtcggcgacttcgggctggccaagctgctggaccaccgggagtcgcacgtcaccacggcggtgcggggcaccgtcggccacatcgcgccggagtacctgtccacggggcagtcgtcggaccggaccgacgtcttcggcttcggcatcctgctgctggagctcgtcaccggccagacggcgctcgagttcggcaagtcgtccaaccacaagggcgccatgctggactgggtaagtattattttatactattattaattcattcgtcaattcgtttgattgattgattgattagcttgtgcaatctcgagtactccctctgtcccataatacaagggattttaagtttttgtttgcactgtttgaccactcgtcttattcaataaattttggaattattttttttacttactttattatcccaagtactttaagcataactttttgctttttatatttgcataaattttttgaataagatgagtggtcaaacaatacaaacaaaaacttaaaatcccttgtattatgtgatggagggagtagtataattctaatcggtagaaacaccttcaaatttaagggcgccatgctggactgggtaaatatatgtgctactgatttcaattcgatccgttaattcgtttgatcgattagcttgtgcaatctggagtagtataattctaatcggtagaaacaccttaagattactccctccattttatattatgaattgatttgatcttttttaagtcgaacttcaatttgatcaagtttatgtaaaaacaaagtagcattttgaacactgcacaaatatatttgtcaaattgtatttaatgttagatttaataaaattgatttggtattttagatgttgctaattttttctattaatttaatcaaacttaacaaaatttgactagaaaaagagttaaagcgacttataatacaaaacggatgaagtaattaagagttagaagatgacactaatactttccaaaattctaaaaaaaattgagaatgtgtgatatattaggaaattgctaaaagattgtcacaagttctttttgttaaaaaactttcaaatgtaactattcaagtattataccttatttcattctagatgctgcaacattaaattcaatctaggcatggagaaaaataaaatctcggctaggaaaaacgcggaactattcgcaacttgattttgtttttttctctcagattgaattttagcctcgcattttcaatacattttttagagtgaagttcagcaccacaatatatgtacttaatttttttagattgttttactcatttttatagggaaatttgtaaaaataatattcactgaaatttttcataactattcgaataatccccatgtaaaccgatcaatcacaaaactaagatcagcggtgtgcttttctatcgaagataaaagatgaagttacggtacacgaaataaaaaaccatttactcctgattaattaagtttcagttattacaaacttaaaaaatagatttatttgatattttaaaataactaatatatatataattttcacacgaaacctaccatttaacagttttaaaaatgtgctaacaaaaatgaaagtaaaatctacatcttaatccgaacaccaccaaatgtgattgtgtgttgttgagggcataatgtagagaaactgtgacgatgatgcaaagaaaaaaaatgcaggtgaagaagatgcagtcggagaagaaggtggaggtgctggtggacaaggggttaggcggagggtacgaccgggtggaggtggaggagatggtgcaggtggctctcctctgcacccagtacctccccgcccaccgcccccgcatgtccgacgtcgtccgcatgctcgagggcgacggcctcgccgaccgctgggagaaggcctccggccactccaccgccgccgccgactccctctcccactcccaccgcacctcagacccggcgccgcccgccgccgacttcgccgccgccttcggccgctgcttctccgacctcaccgacgactcctccctcctcgtccaggccgtcgagctctccggccccagataacaccaccatgatcgagtagctgtggtgtgtggctcttcttgtacagcatgcttgcatggagctctctgtctttctgtctgaatattaatgtagctagctaggttgggaaatacttccctgtttcatattataaaactttttagcattacccatacattcatatatatatgttaataaatctagatatatatgtatgcctagatttattaacatctatatgaatgaatgtgggcaatgctagaaagttttataacctgaaatggaggtagtaataattatattttactaaggtaattactaattagtgatgcgtatatatttatatcattttagatgaactgtacaaacacaagaggagaggacaaggacttgtacttttccgtgtctccatatatacttgatgttaat</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0274500, RefSeq:Os06g0274500