Os06g0300500

From RiceWiki
Revision as of 09:15, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0300500| Description = Nuclear hormone receptor, ligand-binding domain containing protein| Version = NM_001063985.1 GI:115467701 GeneID:4340...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os06g0300500

Description

Nuclear hormone receptor, ligand-binding domain containing protein

Version

NM_001063985.1 GI:115467701 GeneID:4340822

Length

3807 bp

Definition

Oryza sativa Japonica Group Os06g0300500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:11268133..11271939

Sequence Coding Region

11268427..11268661,11268800..11269040,11269155..11269350,11269472..11269640,11269766..11269872
,11270379..11270667,11271031..11271167,11271263..11271322

Expression

GEO Profiles:Os06g0300500

Genome Context

<gbrowseImage1> name=NC_008399:11268133..11271939 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:11268133..11271939 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcaactttcgaggctgtgggtgagggtgtcgcggacaagctcacccattgttttttggatggcacggtcagtacaacagccggagcttgcacggtggtgcgtgatgctaccgatttctgcttccactcatacttctctcttatggatgagctcataagaaaattgggagataatgaaactcctcttgacatcaaactgtcttatctaccacacagcatgcttgctgttcttattgctgttcctttcgacgtattcatgataagtggagtggcattgtggaaaagcccctgcatgttgttgaaaggatggcaaaggctgtgcgaggacttggttggaagggaaggaccgtttctagaaacagtctgtgttcctttcgctggtttgtctatcatattatggccacttgctgtaattggggcagtagttgcttcatttcttagcagcttcttttttggtatgcgtgctggattaattgcttatcaggaggcttctctccaaatgggactagcatatatggtttcagcagtagcattgttcgacgaatacacaaatgatatgctttacttaagagaaggctcatgttttccaaggcccaagtaccgaaaaaccgataggatgaataacgagactggtcagaacaatgaagtgcgcaatgctacatctccattgggagaaaagaaacaccaccataaaaccatgaaggctttgcagcgatcaaagacatttatggaagctatccagcggcttagaccaattcaaatatgggattggctcttccgatcttgtgagctgaatggaaggatattactgggtgagggattgattagtgctgaggacatggaagaatgtatcatcaaaggaaaatgcaagaaattaagcataaagttgcctgcctggtgcatccttcaatgcctgatacgatctgcaaaacatgattcgcatggtttgctcatatctgacgatgttgaagtgacaaacttcaactggcctaaagacaaagtgtttgactggatgcttggaccacttcttgttattaaggagcaaatgaagcaattagagctaactgaagatgaggaactatgcttaaggaggctcatcatgacaaataacaatgataaaccatctgactgggacgattgtggtttcccgtcaagcgataatataaggagagctcggctgcaagcgataatcagaaggttgcaaggcattgttgtcaatttgtcgtgggtaccgagcttcaggagacgattcatcgatctggttaaggcattgtatctcgaggcggtcgaggcaggcgcgatcgacggctcaaggagcgtgaagcgcaaaatcgaggctgatgctgcttctgctcctggaagcaagtttgatgacaaagatggggagggctcatcaaagggcgcagcagcagtgggcattgatgcagtgtga</cdnaseq>

Protein Sequence

<aaseq>MATFEAVGEGVADKLTHCFLDGTVSTTAGACTVVRDATDFCFHS YFSLMDELIRKLGDNETPLDIKLSYLPHSMLAVLIAVPFDVFMISGVALWKSPCMLLK GWQRLCEDLVGREGPFLETVCVPFAGLSIILWPLAVIGAVVASFLSSFFFGMRAGLIA YQEASLQMGLAYMVSAVALFDEYTNDMLYLREGSCFPRPKYRKTDRMNNETGQNNEVR NATSPLGEKKHHHKTMKALQRSKTFMEAIQRLRPIQIWDWLFRSCELNGRILLGEGLI SAEDMEECIIKGKCKKLSIKLPAWCILQCLIRSAKHDSHGLLISDDVEVTNFNWPKDK VFDWMLGPLLVIKEQMKQLELTEDEELCLRRLIMTNNNDKPSDWDDCGFPSSDNIRRA RLQAIIRRLQGIVVNLSWVPSFRRRFIDLVKALYLEAVEAGAIDGSRSVKRKIEADAA SAPGSKFDDKDGEGSSKGAAAVGIDAV</aaseq>

Gene Sequence

<dnaseqindica>3279..3513#2900..3140#2590..2785#2300..2468#2068..2174#1273..1561#773..909#618..677#aaaaaaaaaaaacacactcacatcgacaattttgctgctggttatttttgttgtagtagtattttgctcggtggctattgttttgtagcaagcaggagttgttcagccctcagatggtgtggaatggatggaatctgaaatgatcttctgattgttttttaatttttttttgtgcagctgtgctaattggtccaattgctgccgccatcatctttttggggaattctgctgttattatcggcctgtggcctgctcatttcatatggacatactactgtgttctgaagtatggtaacttcctctgcattggcaccaatacttgcggctgatccttcgttagttagtttcagtatatgaaatgtcaagtagtggccaatagtcttgaattgtggtaaaactgtagcaaatgtttaattcctagtgtgcatcatggggtcattcttatgagctttagtctttacaaaaaattcttatgagatttcagagcggagcgtattggactagttttgaagatccttgctgcgatactgctgccattgcctttgctcctgttgccagtacttgctatttctgggagccttctgggtggtataggatatggagttttcattccactaatggcaactttcgaggctgtgggtgagggtgtcgcggacaagctcacccattgttttttggtaagtaggcgtcgttgaagttctgatacatgtattagttttcagatgtacaactgaagatcttgtagtggtttaacattgatgcataatgttaggatggcacggtcagtacaacagccggagcttgcacggtggtgcgtgatgctaccgatttctgcttccactcatacttctctcttatggatgagctcataagaaaattgggagataatgaaactcctcttgacatcaagtatgttctcattatctgtcatatttttagataatgggaagaatttcattagaaatgaaatcacacctggcctcagtgtcaaccagggacacgcacagtctagaaaagaaaataaaaaactaaggcaaacatgaacgtatcatgctgtcttacagcaactcactcataatctgttatataagttaaaacgaccattcagacatactttcatcttattcagaatgcacagttgttttcggaagaagaatatagtgctaaccatgtacccatagatccttttggacttgattctgccaaacctgcatcatgtatcaaatggcttgagcacttcttttactaatacaatttgttttgttggtgaagactgtcttatctaccacacagcatgcttgctgttcttattgctgttcctttcgacgtattcatgataagtggagtggcattgtggaaaagcccctgcatgttgttgaaaggatggcaaaggctgtgcgaggacttggttggaagggaaggaccgtttctagaaacagtctgtgttcctttcgctggtttgtctatcatattatggccacttgctgtaattggggcagtagttgcttcatttcttagcagcttcttttttggtatgcgtgctggattaattgcttatcaggtatggttagcattttctccgatgaaagtagtagcgtttcgttttgcgaagcactcttatgttctgtcacgtgctaggattatttgggatgaaaaggggtgaagggaaatatatatcatgggcttgggtctgggagtcctaggcccaatgggaacgatatccccaccgctcacgataagtacgtagctcagttggatagagtcagggtatgttaggattaggttaaggagtcttccatctatatatggagggatcctatcccaggtcagttaggcattagatcaagatttgtcttagtttccatcagccctgccttctcgacacgacggagagcgtcatgtcgtataggttcagggccattccctgctacttcgtctattataatccaatctgtttcccttcacagcttcacccctttttgtcccaaataatcctagcacgtgacatgttcggtctgtgacatgaaacttacttgcatcgttgtgaccttctgtgaatccacacaggaggcttctctccaaatgggactagcatatatggtttcagcagtagcattgttcgacgaatacacaaatgatatgctttacttaagagaaggctcatgttttccaaggtgcgtcttttttttgacaaatattcccactgcaacacaccattcatatgtgaactctctttacttatttgtgtccatgcatagatatgtactctagctgccagtaaactacttttgacagacaggcccaagtaccgaaaaaccgataggatgaataacgagactggtcagaacaatgaagtgcgcaatgctacatctccattgggagaaaagaaacaccaccataaaaccatgaaggctttgcagcgatcaaagacatttatggaagctatccagcggcttagaccaattcaagtatttgaatctctcttcctcctgcatgatctaagtccctgttctaaaactacaatctagggactaagggcgcagctgaaaattctaaatttatctgtttcccttttatttacttcctcagatatgggattggctcttccgatcttgtgagctgaatggaaggatattactgggtgagggattgattagtgctgaggacatggaagaatgtatcatcaaaggaaaatgcaagaaattaagcataaagttgcctgcctggtgcatccttcaatgcctgatacgatctgcaaaacatgattcgcatggtttgctcatatgtatgactgcattcaacccatagtattttcaaattcatggttcaatgcgttttattcctaagtaatctgatcttaatgattcaccatctctcttttattcttctgtcgttgtagctgacgatgttgaagtgacaaacttcaactggcctaaagacaaagtgtttgactggatgcttggaccacttcttgttattaaggagcaaatgaagcaattagagctaactgaagatgaggaactatgcttaaggaggctcatcatgacaaataacaatgataaaccatctgactgggacgattgtggtttcccgtcaagcgataatataaggagagctcggctgcaagcgataatcagaaggtacgcaatgctcttgattcactagtatttgaaaaagaatgttactatgcatcaattctttctataggttagcttttggtagctagtaaaattgaaccaaattacttggaacatacaagagaaactcatcatcaacaggttgcaaggcattgttgtcaatttgtcgtgggtaccgagcttcaggagacgattcatcgatctggttaaggcattgtatctcgaggcggtcgaggcaggcgcgatcgacggctcaaggagcgtgaagcgcaaaatcgaggctgatgctgcttctgctcctggaagcaagtttgatgacaaagatggggagggctcatcaaagggcgcagcagcagtgggcattgatgcagtgtgatatctactgtttgtgtacacgaaatttacctggcttccatcatgcattctgctgggccttttttttttctggtaactgcctatgcatgttaatgtactggagacatcctgtaactctgtaagagatggcagaaaagggtcctatttggctgtatggcacctccaagtctccaacttcaaatctaacttcaaaacattttggagttggatctgggattaggttaggtgctaatgtgagactttctgttcatactttgtattaagattagattattaattcactttaatttatttt</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0300500, RefSeq:Os06g0300500