Os06g0300800

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Revision as of 09:15, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0300800| Description = WD40-like domain containing protein| Version = NM_001063988.1 GI:115467707 GeneID:4340825| Length = 8204 bp| Defini...")
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Gene Name

Os06g0300800

Description

WD40-like domain containing protein

Version

NM_001063988.1 GI:115467707 GeneID:4340825

Length

8204 bp

Definition

Oryza sativa Japonica Group Os06g0300800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:11288342..11296545

Sequence Coding Region

11288399..11288812,11289456..11289505,11289598..11289754,11289842..11290060,11290545..11290673
,11291746..11292319,11292416..11292664,11292749..11293275,11293898..11294257
,11294330..11294449,11294971..11295141,11295266..11295424,11295571..11295696
,11295904..11296212

Expression

GEO Profiles:Os06g0300800

Genome Context

<gbrowseImage1> name=NC_008399:11288342..11296545 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:11288342..11296545 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcagctgctcgggaacacggcgcccacgcacctcgagtcggcggtgtccatgccgatgccgtcggagttctccgccgccgcggctgtggcgccgcccgcgccgctgcccgcgatgccgtccgcgccgcccgcgaggatgccgagcagcagcagcagcaagatgccgagggggaggctcctggggccaggggaccgggccgtgcacgacgtggactcgcggctgccaggcgaggcgcagccgcctcagctggaggtgacgcccatcaccaagtacacgtcggacccggggctggtgctcggcaggcagatcgccgtgaaccggacctacatcgtgtatggcctcaagctcggcaacatccgcgtgctcaacatcaacaccgcgcttcgctcgctcctccgcgggcacacacagagggttacggacatggctttctttgcggaagatgtccatcggttagcaagtgcaagtgtagatgggcggatctatgtatggaagattgacgagggacctgatgagcagaataaaccacaaatcacaggaaagattgaaattgccatacagattgtaggagatgctgaaacttaccatccaagaatatgttggcactcccataagcaagagattctgtttgttggagttgctaactgcgtcttaaaaatagacacaacaaaagtaggaagaggaatggacttcagtagagaagaacctcttaaatgcccactcgacaagctggtcgatggcgttcacttggttggtaaacatgatgcagatattacagatttgtccctatctcaatggatgactactcgtcttgcttccgcatcaaaagatggcatggtaaagatctgggatgatcgcaaatctgtgcctctgtctgttctgaaaccacatgatggtcaagctgtttactctgtttctttccttacggcacctgagcatccccagcatataaatctcatcacagcaggccctctcaatcgagaagtaaaaatttgggcttccactaatgatgaaggttggttgttgccaagtgactctgagacatggagatgcactcaaacactggagctcgtgagttctctggaacataggtttgaggaagcatttttcaaccaagtagcagtgttgccacaagctagccttattttgcttgcaaatgccaaaaagaatgctatttatgctgtgcatgttgaatatggcccagatcctgcttctactagattggactatatagcggattttacagttgcaatgcctattctaagtctgacaggaacacacgaaagccaactggatactgaacagatagttcaagtgtattgtgtccagacaatggctatccagcagtatggattggaattatctctttgtttgcctcctacagctgataatcctgggtttggtagagatccagctatttctcatgtgtatgagagacctccagcagaagtaactgtggtggagtcatccaaggaaactagtctgattgattcctctgttgttggtccaactaaaccagcaagcaataatcaggccctagaagcgaatgtcccttcgcaagttcaatccacaactcctccatcaagcattgaccttggatatttagaagaaggtgccttgagaagaggtccttcaagaggtccatctcttggtgatcgtgatatagacccgtcatctcttgattattcaagtaagaaaaggatggattctgatggtgcaagtgggcaaggttcatttggtaggaaggatagtttcggaaaggaagagccaagaggcagccagggtgatggtgtcctttcgtctccagaaacaattgctactggcagttctcaaaatgtagaagtggatgctaaacatgtggatgggagaaaatcagagcgaagtgttgaacttgaagctgtcaaggagacacaaattgttcatgagaaaagggagagacctcccaagactgctgaacaaactgtaaacacaatcagtgaacgcttggtaacaactgacaaatacagtgtggaagattcacaatctcggagtgctgatggatcagtatctacacttttgaaacatccttctggtgctggggatgaaaacactgtaagtgaagctccagagaaaactagtgatggttatgcttctaggaacttgcagttaaccttggctaccaaggaggagaaagttcttcatcctcaagtttctaggcagttatctccttctacaagcacttacaactctgctgattcctctcatgaacctccaagcaacgtaaaccctcctattgataacgttccacaagttggtattcaagaaacactacaacagctaatggccatgcatagtgacctgcaaaagcagctgagcacaattgtatctgctcctattgcaaaggaaggcaaaaggatcgagacatctttaggtcgtaacatggaaaagtccattaaggcgaacattgatgccatgtgggcccgtttccaggaggaaaatgcaaagcatgaaaaggctgaaagagagcgtatgcagcatatcactactctcatcacaactgctgtaaacaaggatattcctgttatgctggagaagtccctaaagaaagaaatatcttcagttggacctgctgttgcacggacaacagctcctatcattgagaaatcactatcttctgctgtttctgattcactccagaaagttcttggtgacaaggttgtgaatcaactggacaaatccctaagtacaaaacttgaagctacagtagctaggcagatccaaacgcagtttcatacgtctgccaagcaggcccttcaggatgctttgcgctctagctttgagtcaacaatcattccagcatttgaacaatcttgcaagacaatgtttgagcaagtagatggtgcattccagaaaggcatgtctgagcatggtgctgctatccgtcagcaggttgcaacagcacatactccactagcacaaactctcagggaaacaatcgcttcagcatcatcgataaaccagggtcttgcatcagagttgcttgatggacagcgtaagcttttggcacttgtttcatcggggggctccttatcgcataatacaagtgttctgcagcctagtaatggaccagtggctagtctccctgaggtcgatgctccactggatcctgttaaggagctaagcagactgatatctgagcgcaaatttgatgaagcatttacaatggctcttcaaagaagtgatgtctccatagtgtcttggctgtgctctcaggtcgatctgcacgagttatgcagaatgaaccccattcctctcaaccaaggggtcctgttggcccttttccagcaactagcatgtgacatcgtcaatgacacgcccagaaagcttgagtggatgacggctgttgctgttgcaatcagtccaacagatcctatgatcgctgtgcatgtgaggccgatattcgagcaggtctatggcgttttgaaccaccaacggtcactgccagcaagcagttcctcggaagcgaccaacatccgtttgatcatgcacgtaatcaactcggtgctgctgacctacaagtga</cdnaseq>

Protein Sequence

<aaseq>MQLLGNTAPTHLESAVSMPMPSEFSAAAAVAPPAPLPAMPSAPP ARMPSSSSSKMPRGRLLGPGDRAVHDVDSRLPGEAQPPQLEVTPITKYTSDPGLVLGR QIAVNRTYIVYGLKLGNIRVLNINTALRSLLRGHTQRVTDMAFFAEDVHRLASASVDG RIYVWKIDEGPDEQNKPQITGKIEIAIQIVGDAETYHPRICWHSHKQEILFVGVANCV LKIDTTKVGRGMDFSREEPLKCPLDKLVDGVHLVGKHDADITDLSLSQWMTTRLASAS KDGMVKIWDDRKSVPLSVLKPHDGQAVYSVSFLTAPEHPQHINLITAGPLNREVKIWA STNDEGWLLPSDSETWRCTQTLELVSSLEHRFEEAFFNQVAVLPQASLILLANAKKNA IYAVHVEYGPDPASTRLDYIADFTVAMPILSLTGTHESQLDTEQIVQVYCVQTMAIQQ YGLELSLCLPPTADNPGFGRDPAISHVYERPPAEVTVVESSKETSLIDSSVVGPTKPA SNNQALEANVPSQVQSTTPPSSIDLGYLEEGALRRGPSRGPSLGDRDIDPSSLDYSSK KRMDSDGASGQGSFGRKDSFGKEEPRGSQGDGVLSSPETIATGSSQNVEVDAKHVDGR KSERSVELEAVKETQIVHEKRERPPKTAEQTVNTISERLVTTDKYSVEDSQSRSADGS VSTLLKHPSGAGDENTVSEAPEKTSDGYASRNLQLTLATKEEKVLHPQVSRQLSPSTS TYNSADSSHEPPSNVNPPIDNVPQVGIQETLQQLMAMHSDLQKQLSTIVSAPIAKEGK RIETSLGRNMEKSIKANIDAMWARFQEENAKHEKAERERMQHITTLITTAVNKDIPVM LEKSLKKEISSVGPAVARTTAPIIEKSLSSAVSDSLQKVLGDKVVNQLDKSLSTKLEA TVARQIQTQFHTSAKQALQDALRSSFESTIIPAFEQSCKTMFEQVDGAFQKGMSEHGA AIRQQVATAHTPLAQTLRETIASASSINQGLASELLDGQRKLLALVSSGGSLSHNTSV LQPSNGPVASLPEVDAPLDPVKELSRLISERKFDEAFTMALQRSDVSIVSWLCSQVDL HELCRMNPIPLNQGVLLALFQQLACDIVNDTPRKLEWMTAVAVAISPTDPMIAVHVRP IFEQVYGVLNHQRSLPASSSSEATNIRLIMHVINSVLLTYK</aaseq>

Gene Sequence

<dnaseqindica>58..471#1115..1164#1257..1413#1501..1719#2204..2332#3405..3978#4075..4323#4408..4934#5557..5916#5989..6108#6630..6800#6925..7083#7230..7355#7563..7871#gggaaccctaacccccccgccgccgccgctgctcccaacccggcgggcgccaggctcatgcagctgctcgggaacacggcgcccacgcacctcgagtcggcggtgtccatgccgatgccgtcggagttctccgccgccgcggctgtggcgccgcccgcgccgctgcccgcgatgccgtccgcgccgcccgcgaggatgccgagcagcagcagcagcaagatgccgagggggaggctcctggggccaggggaccgggccgtgcacgacgtggactcgcggctgccaggcgaggcgcagccgcctcagctggaggtgacgcccatcaccaagtacacgtcggacccggggctggtgctcggcaggcagatcgccgtgaaccggacctacatcgtgtatggcctcaagctcggcaacatccgcgtgctcaacatcaacaccgcgcttcgctcgctcctccgcgggcacacacaggtaatgaaatgtatgacagctatagatatgttatagagtacttaggagcatttgttattgtttagtgcactttaagtgttcttttatcatctcatggtgctagtatctcaaacgtggattacggatttcttttgtttaagcatgagccatgcaagcattatactatacgtatagacagtagcgtgtgtttggtatgatcttctttgctctttagcagcatgtgcctctataatttttactatggaggcatgtattagagattttaggctgaggaattgactttcatagcacacagtgaaactctgaattcagaattttcattatcaaattacttaatatgcttactacatgctgcagaaattcaaagtgaaacttgaagttggctgcaactagagcctgaatgttaatacctaatcacatttgcagtgcactaattctccttccatatcctgatggggtgcttttttttaacattttgccatataaatttctactacctatgtgatgaaaatgatgttttgatgttatgccaaatcttttagtagtttggcattttcttatttaattaacactcttgatcttagttagcaatgaagtccatttctatatttatgttttgaattcttttttgtgtttgctgtagagggttacggacatggctttctttgcggaagatgtccatcggttagcaaggtatgtgtagagaggatgacatttggttactgccacaatctctatttctctctctctgtgtgtgattaataacttgtttgattattctgcagtgcaagtgtagatgggcggatctatgtatggaagattgacgagggacctgatgagcagaataaaccacaaatcacaggaaagattgaaattgccatacagattgtaggagatgctgaaacttaccatccaagaatatgttggcactcccataagcaagtaaagtctcttctacatcaccaatgctacactaaatgtctttgactgtcttttatgttactgatttgtgtacattttgtcctgtaggagattctgtttgttggagttgctaactgcgtcttaaaaatagacacaacaaaagtaggaagaggaatggacttcagtagagaagaacctcttaaatgcccactcgacaagctggtcgatggcgttcacttggttggtaaacatgatgcagatattacagatttgtccctatctcaatggatgactactcgtcttgcttccgcatcaaaagatggcatggtatgtaacgttgcattgtattttcttgtttcttagaacttatgcttactgataagctataaaataaataaatggtccccaataaccgaagatccaagatgaaactttctgattacattctctctcattcacatgttaattggacatatttttgtttccacttttgttagctttgaaaacatcatcaactgccatgtgataccttttatatccactttgactgagtaatctatatggaaggtgctttcatgtctcaccaaatctggtcagcaacctatgcttggtattggtgtcaatgctatgttattgggtataatatttgctttcctgatgtaccaatgcaaaatttgcagcttctggcatctgttttctcatttgatgagaattggttttcatgagatacttccattgttgttggacctatcaaaacattatcttgcatttctagtttcattttgtaatgtgtactttctgtttcctacaggtaaagatctgggatgatcgcaaatctgtgcctctgtctgttctgaaaccacatgatggtcaagctgtttactctgtttctttccttacggcacctgagcatccccagcatataaatctcatcacagcagtatgaactcttgtactattttgatattttcattttgtttgttttgtcttcttgtaccttttttatcttattcatttctttttatcatcagtggtcttttaaatgtctgcttgtatccagcaggcatatttgcttattaatttaggctttcttttctgataaatgatgatgaccataacttgttcttctgcttatactttattcaacaatgtttaaatatattaaaagttctcattaaaccttgatcaggaaaagtagttcttgcattggtgcctgcaaaactggaggtgaataatttggaaggaaacatggttgatagttcctaatcatatttaagccctttttttgctcgatgatttacaaaatgatgattatgctatttaggctctgttcgccattccaggttcccaaccgggaacagtagcacggaaaacggagcgatttattagcgcgtgattaattaagtattagctaattttttttcaaaaatggattaatttgattttttaaagcaactttttgtgtagaaacttttcgcaaaaaacacaccgtttagcagtttgaaaagcgtgcgcgcggagaacgagggagaggggttgggaaaaggatgtgccgaacacagccttaatggtgattgggtgttgggtgtggtcatcatgaggtctcatatcactcagaagggagaatatcccctggttcattattgttgttttattatgatagccatatgaattccttttttatatactccctctgtcccagaatataaggtttttagggttggacatgggtattaagaaagtgggtagaattaaatgggagaaggttgtgattggttgagaagtggaggtaggtaagaaaattgaatggtggagggctgcaataggttgagaagagaatgttggtgaagtagttgttatattttgggacaaaccttgagggctataagttgttatattttgggacggagggagtacaaggcaaaaagaacataaaacttaaatatgcctatttgtttagtatctctctttaatcaaattacttcaaataatcttttctgaaaatattgtagggccctctcaatcgagaagtaaaaatttgggcttccactaatgatgaaggttggttgttgccaagtgactctgagacatggagatgcactcaaacactggagctcgtgagttctctggaacataggtttgaggaagcatttttcaaccaagtagcagtgttgccacaagctagccttattttgcttgcaaatgccaaaaagaatgctatttatgctgtgcatgttgaatatggcccagatcctgcttctactagattggactatatagcggattttacagttgcaatgcctattctaagtctgacaggaacacacgaaagccaactggatactgaacagatagttcaagtgtattgtgtccagacaatggctatccagcagtatggattggaattatctctttgtttgcctcctacagctgataatcctgggtttggtagagatccagctatttctcatgtgtatgagagacctccagcagaagtaactgtggtggagtcatccaaggaaactagtctgattgattcctctgttgttggtccaactaaaccagcaagcaataatcaggccctaggtaatacatttgaaacttcacatccaaatgcttccattaattatggcactgttaagtttgtcatcaatatctcacctggtctatttgcttatgcagaagcgaatgtcccttcgcaagttcaatccacaactcctccatcaagcattgaccttggatatttagaagaaggtgccttgagaagaggtccttcaagaggtccatctcttggtgatcgtgatatagacccgtcatctcttgattattcaagtaagaaaaggatggattctgatggtgcaagtgggcaaggttcatttggtaggaaggatagtttcggaaaggaagagccaagaggcagccagggtgatggtacaaaaacctcagatcctcgtcctatgtttaaggtgggaggaaatgctacgcacttgataactccatctgaaattatttcaggtgtcctttcgtctccagaaacaattgctactggcagttctcaaaatgtagaagtggatgctaaacatgtggatgggagaaaatcagagcgaagtgttgaacttgaagctgtcaaggagacacaaattgttcatgagaaaagggagagacctcccaagactgctgaacaaactgtaaacacaatcagtgaacgcttggtaacaactgacaaatacagtgtggaagattcacaatctcggagtgctgatggatcagtatctacacttttgaaacatccttctggtgctggggatgaaaacactgtaagtgaagctccagagaaaactagtgatggttatgcttctaggaacttgcagttaaccttggctaccaaggaggagaaagttcttcatcctcaagtttctaggcagttatctccttctacaagcacttacaactctgctgattcctctcatgaacctccaagcaacgtaaaccctcctattgataacgttccacaagttggtattcaagaaacactacaacaggtgattacatatttttgtccaatctattgcaatggaacttgtctaacatatcatattcatttacaatataatattggtaggctatgcccaatagctggctggcttccggatcattttctctcaataactacccttccaattttaaaaacaaattatagataaattaatttttggtaacccatatttcacccctactacacacctttcacacatgaatattgctgttcagtggccgcctatcagttcaagttagttgcagtaatctaaaagtataatttttggctttgattgtaccactggagtttgtgtaacttgtctttgttttggatcgctaggaaagaagactagttagtgtcattgacatataaacttggaatagttgtgagatgtgatattatattgttcttgaatataaatagcatacaccaaatgggccaccatattggactctccacctttgagctacactcttattctttttgttaaattgttacaccacaatcattcttattctagaaaaccagtatgttgaacacatcactattttccttgactaagggtaaggatggctttcagtgtgacaggagttaaatttccttctattaacttgtgcatgttgcagctaatggccatgcatagtgacctgcaaaagcagctgagcacaattgtatctgctcctattgcaaaggaaggcaaaaggatcgagacatctttaggtcgtaacatggaaaagtccattaaggcgaacattgatgccatgtgggcccgtttccaggaggaaaatgcaaagcatgaaaaggctgaaagagagcgtatgcagcatatcactactctcatcacaactgctgtaaacaaggatattcctgttatgctggagaagtccctaaagaaagaaatatcttcagttggacctgctgttgcacggacaacagctcctatcattgagaaatcactatcttctgctgtttctgattcactccaggttgtagctattgtttctctctgatgttctttttttccctcaacgcctctctcattgcccttctactttcagaaagttcttggtgacaaggttgtgaatcaactggacaaatccctaagtacaaaacttgaagctacagtagctaggcagatccaaacgcagtttcatacgtctgccaagcaggcccttcaggtatgcatattataagcagttaagttgttgattccagatgggcatgtgatattattattcccatgatttatgttgagttcatgacagatttgtttcactgagttatattttcttgtgcatcacatattttcggtcgctttattgtcagaagaaaaccatctatgcatcggattgtgtaggatggagttgcattcaagtatttggtactttggttgggaagattgtacacgccagtcgttcataatataatccaaaagatagtgatatttttgttttgtttgaccaaactgtgacataatggcatgcagcatgaacatctctcaaggatttgaaattcagtatagaccaaacaccataatatgcctcactaactagttcagtcgaggcgtcaagcaccaaggaactcaagttgcatcaacatatatctatgattaatatgatacaggatgattgcacgagggaaaaaacttttatgtagtgtttactcaagtaactgattggttttaatttgatcctttcaggatgctttgcgctctagctttgagtcaacaatcattccagcatttgaacaatcttgcaagacaatgtttgagcaagtagatggtgcattccagaaaggcatgtctgagcatggtgctgctatccgtcagcaggttgcaacagcacatactccactagcacaaactctcagggtaagtttgccggcttctttcttgagcatttattgcatagagtgccagaagtgacacagagatgaaggaaacatgccaatatcactcgcaccatcttctgacctcatatttgaatttatgtcaggaaacaatcgcttcagcatcatcgataaaccagggtcttgcatcagagttgcttgatggacagcgtaagcttttggcacttgtttcatcggggggctccttatcgcataatacaagtgttctgcagcctagtaatggaccagtggctagtctccctgaggtattacagtttccatgttatctgtatgtttcattgtttttatttttgctgatctgtaatgaattaatacaggcacattaatcttgctcttactcatgcatcgtaaataatgaagcattttacaattgtcactgtttcaatttcaggtcgatgctccactggatcctgttaaggagctaagcagactgatatctgagcgcaaatttgatgaagcatttacaatggctcttcaaagaagtgatgtctccatagtgtcttggctgtgctctcaggtattatagcctcgactatggttattgagctattcccattttcatcctttgcgaacaaaccaagtaatgtctattgtctgctgacttgcaactcatacttagcgcgtgctggtgtggatttgatgcacttttgcttcaccatccgagctttcattaccataatttgcacctgctatggatgtttgatattcttaaatcctctgtcaggtcgatctgcacgagttatgcagaatgaaccccattcctctcaaccaaggggtcctgttggcccttttccagcaactagcatgtgacatcgtcaatgacacgcccagaaagcttgagtggatgacggctgttgctgttgcaatcagtccaacagatcctatgatcgctgtgcatgtgaggccgatattcgagcaggtctatggcgttttgaaccaccaacggtcactgccagcaagcagttcctcggaagcgaccaacatccgtttgatcatgcacgtaatcaactcggtgctgctgacctacaagtgataaccatcttcagtagcgtgctctctcagtagctgctgtaagtttgggcaacattcttgcaatccctgtacagataaaattttgaaaagcgaagtaaaccgataaaagttgtggtgatggtggtgatacattgtggctgacaagccaaggaccactagtcattagcatggtgggcatctggtgtaaattggtccgttgtgttccagcccgttctgagctgacatttttcatgtgggtctgtcatcttgaacatgttattcagcgcatgcagaatatagctctgtactgttaacctctgttgagttgctagtttaaaccgtgattttagttcct</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0300800, RefSeq:Os06g0300800