Os06g0301000

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Revision as of 09:15, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0301000| Description = Zinc finger, RING-type domain containing protein| Version = NM_001063989.1 GI:115467709 GeneID:4340826| Length = 535...")
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Gene Name

Os06g0301000

Description

Zinc finger, RING-type domain containing protein

Version

NM_001063989.1 GI:115467709 GeneID:4340826

Length

5359 bp

Definition

Oryza sativa Japonica Group Os06g0301000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:11305439..11310797

Sequence Coding Region

11305822..11305911,11306883..11307090,11308366..11308507,11308583..11308785,11308860..11309009
,11309092..11309268,11309867..11310399

Expression

GEO Profiles:Os06g0301000

Genome Context

<gbrowseImage1> name=NC_008399:11305439..11310797 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:11305439..11310797 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgattcggctgcagacgtacgcggcgttcagcctgatggcgacggcgacggcggtgtactacgcgttcagcagcagggagcagttctacccggcgatggtgtacctctccacctccaagatctgcttcgtgctgctcctcaacacgggcctcgtcgccatgtgcgtcgcctggcagctcgtcaagcggctcttcctggggacgctccgggaggccgaggtggagcggctcaacgagcaggcgtggcgggaggtggtggagatcctcttcgcggtcaccatcttcaggcaggacttctccgtctccttcctcgccatggtcgccgcgctgctgctcgtcaaggcgctgcactggctcgcgcagaagagggtcgagtacatcgagaccacgccctccgtgcccatgctgtcgcacgccaggatcgtctccttcatgctgttcctgctcgtcgtcgactgcctcttcctgtccaactcgctcaggtcgctcatacacaagcgggaggcgtctgttgcaatcttcttttcgtttgagtacatgatactagcaacatccacagtatcgacattcgtgaaatatatattctatgtcagtgacatgctaatggaaggtcaatgggagaaaaaggcagtgtatacattttacttggagctcatcagtgaccttgtacacttgtctttgtatatgctcttcttcatagctatcttcctgaactatggtgtcccactgcacttgatacgtgagctgtatgagacatttcgcaacttcagaatccgtatcgcggattatgtacgctacagaaagataacttccaacatgaatgaaagatttccagatgccacagcagatgagctcaatgcgagtgatgctacatgtattatttgccgtgaggagatgaccacagcaaaaaagctgctttgtgggcacctgttccatgtccattgtttgaggtcatggttagaacgccaacacacttgccctacatgtagagctccaattctgcccccagataatgggcgtactgcagcacgtccgcatggagttcatcctggagttcagcctgttccaggtaatggcacaccaggttcagaacgagcagcaggtgagaacataagcaggcgccaagcaaaacttgaagcagctgcttcggctgcttccctatatgggagatcctttgcttatcctccagcgaacaatttgaacaggtattcaactcctccacagtctacatcaaatggtccacaatcaggagaagcaagtacttccaatcaatcgccaaaaggccatgcaactgccgatccttcagcgcctactttttatgcacgtggtgctgttagttcagtgacaactaccagggaacttgaaagttcactgcagaaggcatatgaaaatgctataaagagccagatagagatgttgcaaatccagctgcaaatgtttcagcatggggctacttcatcagcgactaacaatgaaaacggtgagcacacaaaaagcgactga</cdnaseq>

Protein Sequence

<aaseq>MIRLQTYAAFSLMATATAVYYAFSSREQFYPAMVYLSTSKICFV LLLNTGLVAMCVAWQLVKRLFLGTLREAEVERLNEQAWREVVEILFAVTIFRQDFSVS FLAMVAALLLVKALHWLAQKRVEYIETTPSVPMLSHARIVSFMLFLLVVDCLFLSNSL RSLIHKREASVAIFFSFEYMILATSTVSTFVKYIFYVSDMLMEGQWEKKAVYTFYLEL ISDLVHLSLYMLFFIAIFLNYGVPLHLIRELYETFRNFRIRIADYVRYRKITSNMNER FPDATADELNASDATCIICREEMTTAKKLLCGHLFHVHCLRSWLERQHTCPTCRAPIL PPDNGRTAARPHGVHPGVQPVPGNGTPGSERAAGENISRRQAKLEAAASAASLYGRSF AYPPANNLNRYSTPPQSTSNGPQSGEASTSNQSPKGHATADPSAPTFYARGAVSSVTT TRELESSLQKAYENAIKSQIEMLQIQLQMFQHGATSSATNNENGEHTKSD</aaseq>

Gene Sequence

<dnaseqindica>4887..4976#3708..3915#2291..2432#2013..2215#1789..1938#1530..1706#399..931#gaagaaaaaaacacaaaaaccgaaaagaaaagaaaaaaaaaacaacaacaacaagattttttttttccgcaaaccctctcgaaccaaaatcgcggcggctttatccacgaatcaaaaaaaatccccgcgacaatgtctccgcccaatctttcctcctcctcctagagccggagaatccacccgccatcaccatcgtgctcgcaatcgcatcggtaagagcagcttggatctggtctagggtttgtggggggttcgcgatatcgtcgcgattcccgtccctttttcttttttagttttgattcgtgatgagctggttgtttgttgtgctaattttgtgatccggtgggtggtgggtggtggtgcagcctgtggcgggatcgccggcggcggcggcggagatgattcggctgcagacgtacgcggcgttcagcctgatggcgacggcgacggcggtgtactacgcgttcagcagcagggagcagttctacccggcgatggtgtacctctccacctccaagatctgcttcgtgctgctcctcaacacgggcctcgtcgccatgtgcgtcgcctggcagctcgtcaagcggctcttcctggggacgctccgggaggccgaggtggagcggctcaacgagcaggcgtggcgggaggtggtggagatcctcttcgcggtcaccatcttcaggcaggacttctccgtctccttcctcgccatggtcgccgcgctgctgctcgtcaaggcgctgcactggctcgcgcagaagagggtcgagtacatcgagaccacgccctccgtgcccatgctgtcgcacgccaggatcgtctccttcatgctgttcctgctcgtcgtcgactgcctcttcctgtccaactcgctcaggtcgctcatacacaagcgggaggcgtctgttgcaatcttcttttcgtttgagtaagctccattttctttacttctcgcttttggatttgtatgctctcttagacaacatatgcttaagagttgttattactatgagtagtatatggattttcattgctagatgtcaagttaattttgtaagttgcatttatagcataccggactatgaagcaattaaaataattcttacgtattgattttaggtaacagattcaatttgacttagtgtgttcacttagctatgcataaatttgcctaatatgctcataaatcctttcatttagatatttggtttttatattccaatttcctaatctatgatgatctcgttgagttttgcttgtttgaaaaaacacagtgctttaagaactttttagatcaccatgtccgactcttttttgacattagattttagtaagatttataagctgtataatacttatcttttttgaagcgtgggatgtgccttttgcacaatacataaccatattgactaatcttaccgttgcctgatgctattcttctctgtatctgactatctgccgatgatttcttcttgtgttatttcacaatattgagattcataataactcaaggatgtgcatatcaggtacatgatactagcaacatccacagtatcgacattcgtgaaatatatattctatgtcagtgacatgctaatggaaggtcaatgggagaaaaaggcagtgtatacattttacttggagctcatcagtgaccttgtacacttgtctttgtatatgctcttcttcatagctatcttcctgtaagttctcttaagatgatatttctgctttatgtgttgtactgtcaacctgggtaattgatcttctatattgatatatcaggaactatggtgtcccactgcacttgatacgtgagctgtatgagacatttcgcaacttcagaatccgtatcgcggattatgtacgctacagaaagataacttccaacatgaatgaaagatttccagatgccacagcagatgagctcaatgcgtgagtcttattgaaattttaattcagttatttctttaacgaaaattgtttgtgacttaatcttttatattcaggagtgatgctacatgtattatttgccgtgaggagatgaccacagcaaaaaagctgctttgtgggcacctgttccatgtccattgtttgaggtcatggttagaacgccaacacacttgccctacatgtagagctccaattctgcccccagataatgggcgtactgcagcacgtccgcatggagttcatcctggagttcagcctggtgactgtctaaacctttttgtatcattttgcacaacgtttatactttgttctaattcaacataataaaaaatagttccaggtaatggcacaccaggttcagaacgagcagcaggtgagaacataagcaggcgccaagcaaaacttgaagcagctgcttcggctgcttccctatatgggagatcctttgcttatcctccagcgaacaatttgaacaggtactgattctactttttgctgggagagactactgcaaacttttttgtaattccatttcagacttggtaataactatgataacaaatgccaaatctgaaaattcttttgtggataatggaacttgtgacttctacaaagtttagacattctttttttttttttgcaaactgcctttttttctgtgactaagtacatatctatgaactttgttggatgattataaatttaattgtgctgtactgatggttcattaatatgatgtataatgattgtagagcttgttctttttttgcctattcttccaatgctaggcatactctctctctctcatgacatttaacattatgcctttgagtgttgctgtcatctccaataggctgagcatactcattggtctcactatctctttgttgtttgcttgcatgaatgtagttgtcgatgccccaatgtattttattgtggattaaggatgtctagtacctattttccacatgacgtcgtattaaaaaaggaacttcactcaacccatgcttatctgtaatccatatatcttacctttcgtgataaatacatttgcattagaaatggaaataagataagcttgtgagaacaatgagtgagcctgggccttaaagagtagtgaaatgttatgtgaaggaaatatggttacctaaaattggtgtgtaaaagcatgatttttgtgatgatttacctgaagatagtctggttttgtgaaatttactcttagaagagttaatttgcacgatttattcacagttttcctgtgatttttatttgcatagcatttgcttatactccctccattccaaaatataaggcacaaccacccttaacccaaagaccaagaaataattattatcatcttatagtttgaatcatcctaataaatataatgcatgcatccaataggattagataacatgagagtggaggattttaaaaagtaataatttaatagagaagatgtcataattaattgtatgcttgcatgcatgctttatattatggaacatctaagaaaagtggttgtgccttatattatggaatggagggagtactacatagttaatcatatttggttgttcttaactgtctctgtaaccaattcccacaaaaaaaggtatttctgtaaccaaggttgggttaatgaaatgtgtttctaatactttttttttataagctgagcaagatgtaatcatttgtcatttgctctgtgtgtcctgacactgataagtatcatgtattcaacataggtattcaactcctccacagtctacatcaaatggtccacaatcaggagaagcaagtacttccaatcaatcgccaaaaggccatgcaactgccgatccttcagcgcctactttttatgcacgtggtgctgttagttcagtgacaactaccagggaacttgaaagttcactgcagaaggcatatgaaaatgctataaagagccagatagaggtaaggatgcaatttgattcctaaagctaacttaaatcatgatatatgttttgtattggcactaccaagtgtcacatttgttaatacaaaccagaggcttatgcaggctgcatgcaaatttctggatatgtctgttgtaaacacatctttaactgcactcaagttacatgcttggtatgagccattgggttagacattgatgacttagattcatgggaaactgggtgtcatatggatgcataactttataacattctgaatttgcacgcacataggctgaaagttgttagtaagagctctcacctccaaatataaaatgagaccactgaactcgaatgaaaaatataaaatgagctagctaagtgagaaagagaattatgctctacatagccctttctccttttcctatttattttatctgttgtttttgttaaggattgtgctccttatgtttatcttgatacgggttgattttgaatttcaaatgcacctaatttcaagtgggtgttatgtaaaatgatttgaaatgaatgcacctaatttgtttgaccatattcatgtgacggctatgaagtaatataagtctataggtatgccagcaagcagttttattttgtaatatcagttatttgacgtacctatccctttgttatggacatatcttgaggtgcactgcagaatggtatgcagcatacaagtgtaaacattgctgcattttaaatgcttgattatggtcatcaactaactttagacagtaaacatggttcattagactaattaacgataacgagaatagagaactagatcatttcagtttggcattcgttaccatgcgccaaaatagcaaaaaaaaatatgcttcaccttattttccaatggcatacttattcggaataacattgaacagtaatattcttttatgttagttgtttatacccaacaggattcataacatcatttcctttttccagatgttgcaaatccagctgcaaatgtttcagcatggggctacttcatcagcgactaacaatgaaaacggtgagcacacaaaaagcgactgaagttgtaaataaggggaaggtgagggctgaacaaacaaaggatatatagatggtgacttggcaaatacccgaggagaaactcccatgccatgctttatttcgattttggtaggctcgttcatttgtatgtccatgttagaggcctcctatcaacatcagatatttatttgcttaatgtggtcatttgagtagagatgcagtgttgtaactacgactaatttcagattagcacatctgggaaaaagcaacatgattcttcaatctgaaccatcagtatgctccctcttttttctggcatttttgtttgtacgctatagttggatttatactgtccagacattcaatactgaatttaataaatgtgaatatggtttaagtcgctc</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0301000, RefSeq:Os06g0301000