Os06g0308000

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Revision as of 09:16, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0308000| Description = Similar to Trigger factor-like protein| Version = NM_001064007.1 GI:115467745 GeneID:4340846| Length = 5031 bp| Def...")
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Gene Name

Os06g0308000

Description

Similar to Trigger factor-like protein

Version

NM_001064007.1 GI:115467745 GeneID:4340846

Length

5031 bp

Definition

Oryza sativa Japonica Group Os06g0308000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:11745060..11750090

Sequence Coding Region

11745080..11745370,11745562..11745645,11746090..11746218,11746606..11746694,11746833..11747016
,11747658..11747748,11748060..11748214,11748434..11748526,11748717..11748809
,11748959..11749039,11749111..11749260,11749378..11749473,11749733..11749810

Expression

GEO Profiles:Os06g0308000

Genome Context

<gbrowseImage1> name=NC_008399:11745060..11750090 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:11745060..11750090 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagctcgccaccgccaccgccgccgccgccgcctcctccaccacccgtgctcaccgaccccgcagctccaggctcgcagtcccgacgagggacagctgctccctcctcccctcctcttcctcccgccagttcgccgcgctctccacgtcggcggcctccaccgcctcgcggtcacgggcgcagaggcggcggctccccgtcgcctcggccgccgtcgagctccgggaggcctcgtcgcagggcggagactccgtccgcgtcaccgagacgctgcagcccggctccagtgtcaagttcagtgtggaggtgcctccttccatatgccagcaatgctatgaaactactctacaagagtacgcaaagcgcttcaagattcctggatttcgtcccgggaaagtagttccagagaacgtacttataaactatgtaggaccaaaacacgtacaggatgctacagttgaagctatcttgaggcatacacttcctcaagcattgtcctcggtagaggacagggcattagaagattctgtacgcattctaacaaagtttgaagatatggcaaattcattctctcttgataatgtgtttagatatgatgtttctgtggatgttgcccctgaagtgagatggttatctgaagataaatataagaacctcaaagtggtcgttgaaatagatgaaattgttgatgctgaaaaggcagctgagatagaacttaaacgtcgtcataaagctctaggattactccgaatagttgctgacagaggactgcaggtaggtgatctggtggtactagatatatttgcagaaagtattaccagtgatggctctaaaggtgaaaaaattccatcagctgagagtaaaggtttccacttggacactgaggaaaacaataaccttgttcctggttttcttggttcgttaattggtattcgtcctggtgagactagatcatttcctcttcaattccctgagtcctttgaacaagaaagtctgcaaggtgtccgtgctcaatttactgttgtgtgcaaagagctcttctacagagagttgccagaattggatgactcacttgctggaaagctccttccaggctgcactaccatggatcaggttcgagaacgcattttgcaaagatgtaaagaagtggagaaaacagcaatagaacaagcaacagataatgcaatccttgatcagcttggaaagttagttgaagttgatgttccacgagccttatttcaagaacaaggccagcagttgtatggagccaaacttctacaactccaggcagaaaggaagctagataaagaccagctggcatccctttcaagccaaaagtcagttcaggaatacctagaaagtgagagagaaaatattaatagaatcattaaacaaatgttggctgttggtgaaatattcaaggctgaaaatctgcagttttcgaccgagcaactggtaaaggaagttgagaactctatagaagagttcaaacactataatcaagactatgatgaggggagcatcaagcagcaggttcaggatgttctagaggcagcgaaggtgctcgaatggctcaaggagaactgcattattgagtacattagaccatga</cdnaseq>

Protein Sequence

<aaseq>MELATATAAAAASSTTRAHRPRSSRLAVPTRDSCSLLPSSSSRQ FAALSTSAASTASRSRAQRRRLPVASAAVELREASSQGGDSVRVTETLQPGSSVKFSV EVPPSICQQCYETTLQEYAKRFKIPGFRPGKVVPENVLINYVGPKHVQDATVEAILRH TLPQALSSVEDRALEDSVRILTKFEDMANSFSLDNVFRYDVSVDVAPEVRWLSEDKYK NLKVVVEIDEIVDAEKAAEIELKRRHKALGLLRIVADRGLQVGDLVVLDIFAESITSD GSKGEKIPSAESKGFHLDTEENNNLVPGFLGSLIGIRPGETRSFPLQFPESFEQESLQ GVRAQFTVVCKELFYRELPELDDSLAGKLLPGCTTMDQVRERILQRCKEVEKTAIEQA TDNAILDQLGKLVEVDVPRALFQEQGQQLYGAKLLQLQAERKLDKDQLASLSSQKSVQ EYLESERENINRIIKQMLAVGEIFKAENLQFSTEQLVKEVENSIEEFKHYNQDYDEGS IKQQVQDVLEAAKVLEWLKENCIIEYIRP</aaseq>

Gene Sequence

<dnaseqindica>21..311#503..586#1031..1159#1547..1635#1774..1957#2599..2689#3001..3155#3375..3467#3658..3750#3900..3980#4052..4201#4319..4414#4674..4751#tgcctccgcgagccgcggccatggagctcgccaccgccaccgccgccgccgccgcctcctccaccacccgtgctcaccgaccccgcagctccaggctcgcagtcccgacgagggacagctgctccctcctcccctcctcttcctcccgccagttcgccgcgctctccacgtcggcggcctccaccgcctcgcggtcacgggcgcagaggcggcggctccccgtcgcctcggccgccgtcgagctccgggaggcctcgtcgcagggcggagactccgtccgcgtcaccgagacgctgcagcccggctccagtgttagctcctcctcctcccctaggctctctcctcctcgtctctcgaatcgatcgcaatcgcttgtgtgaaattggagagcgggagtgattcgctcgcttatgaattcccttttgtctctatcttggtaggtgtgagacttacgaatttgtgcttgatttcttatgggtttggtttgtgctggtttttacaggtcaagttcagtgtggaggtgcctccttccatatgccagcaatgctatgaaactactctacaagagtacgcaaagcgcttcaaggtaccatttctgtggtagcacatagaccaaatgaaacatatgcgtacatcatgggaacaatgttgattgattgcataatttgaaaagactgggcggctcgcccagagattagtctcttctttatggttaatgggtatatatgttttgtaactacataggagttgccaagctgataacttgtgctgcataccactgatagtcttttttgcaaggaagacgtgcggttgctcagaaatgagctctggtcttttgtgtgtaattgagatcgactacattttgaaattggaaactctcgacacagctagcatgtttgagctttctgcatgtaacatcaatatttcatgataaatttatttgctatgttttctaagcaggatgatgttcgcaacgaacatagtatattctaaacaatatgctaatatccctcctatctcttcttgtcagattcctggatttcgtcccgggaaagtagttccagagaacgtacttataaactatgtaggaccaaaacacgtacaggatgctacagttgaagctatcttgaggcatacacttcctcaagcattgtcctcggtatgaattttcctgagttctgttctaaaaagcactactccaatgcacttgtctgaattttttcttcgggccattcataaaaagcaaaatgtagttacgattacctgtattttcagagtgatagcgaagtgccgatatgattaatactgatatgctatgtgcatcattcatgtcaacaaaccaaaaactcaccagcctttggcgtcatctaatatttggggcagaaatgctatgaactttgttgcacaacagataacttatctccctaatggtccaacctctccctgaatcatgatatgccttgctccatctcaaaagatactacatgttatgttgtacacactattacatcctattcggttgatacctacctttcttttgtttcaggtagaggacagggcattagaagattctgtacgcattctaacaaagtttgaagatatggcaaattcattctctcttgataatgtgtttaggtacatagttactactatctattctagattcctgtttttatttgtctaacttgtaaatttttgttttgtgtacgatttagtgattactgtaatgtgcctttgagttcgtttctctttgtttcaccaaattttactcagatatgatgtttctgtggatgttgcccctgaagtgagatggttatctgaagataaatataagaacctcaaagtggtcgttgaaatagatgaaattgttgatgctgaaaaggcagctgagatagaacttaaacgtcgtcataaagctctaggattactccgaatagttgctgacagaggactgcaggtaaaatattttggtttctctctagtatgttataaatgaactatgcctttagtattaattactcagagtatgattttccattttcaaataaattctagatgacaaagtttacagaaaactggccaataaagctaactattattttactcccacttattcatgtttccactgtatgttatttcctgagtcttatgatgtccataatcttccaaagtccgtgtaacatttgtatgcccctattaatattggttagtactggcagtactattcaggaccaatatgaccactgtgatatttacttatttctattcacggggatattcctttgataatatcttgatctgatgttggtgtaagtcacacatccttttcttgttagcataatctatctgttcatacagaaaaaaggggttctaaatctccaagtttgtcatgtacatgatgcaactgtatagtccaggattttaccatgttatacatttccttttactttcagacgttctcttaaaaatgttgagaagtcttgtattcaaaatatgaatgaagggttatctgtatttgacatgttaatttaaaactagtttcatggtttttgttggtaatattattatgccatgacatctatttctggacttatgtaggtaggtgatctggtggtactagatatatttgcagaaagtattaccagtgatggctctaaaggtgaaaaaattccatcagctgagagtaaaggtttgtcaattattcacacacatgttttataagattttccaaaacttcactttttggtgcattatgactagtcagcaaagtgatatgctaatgctatatgtcaaaagtgtgtgtcctatagtaatgccttgatgctgcacttgtttgcagctaatttgagtagcggtgtggcattaattccacatgcctggatttatcttttgtaccgatagtgtgtgcacagcggcttccatttcctgttgtttggaaaccacggtgatatatttctcttttgtgttgtcacactcatacatatttactatgatttacaggtttccacttggacactgaggaaaacaataaccttgttcctggttttcttggttcgttaattggtattcgtcctggtgagactagatcatttcctcttcaattccctgagtcctttgaacaagaaagtctgcaaggtgtccgtgctcaatttactgtgagtgcaactagacttcccaaggatcacatttataaatatattgtgcctatatcacaccacatcagtatcattttcatatgccaaatctaggcatgtttatttgttttctgagtatgaaatgtttaatcgctctccacagtgacagatttgtgtcccagactttcagtctaaggctattaccatgattttcattcccatccttcactaattctgtaggttgtgtgcaaagagctcttctacagagagttgccagaattggatgactcacttgctggaaagctccttccaggctgcactaccatggatcaggttctaccctattgcagtagtgtttcttaccagttgtgctattcactgaaaccctcattgtgggatgtgtgctagttgacctgcatctttgcatgttactaccgtgtgctattccttgttctttgttgagtttataaaatattagctttaaagtgcgttcaataacaattatccctcctgaccattacaggttcgagaacgcattttgcaaagatgtaaagaagtggagaaaacagcaatagaacaagcaacagataatgcaatccttgatcagcttggaaaggtagtcttcttactcctaaataaggccttaagttatgaagtcctgacttaggggatcattgtacatcatgcttctttctgttgtcaatttttttgcaccttctccaacatcctgtagtcttgctctaaattttcacttggtttgtatagttagttgaagttgatgttccacgagccttatttcaagaacaaggccagcagttgtatggagccaaacttctacaactccaggtactggataatagtctaactactacctatcttttcttcctttctcaatgtaaatttattaattcctgcaggcagaaaggaagctagataaagaccagctggcatccctttcaagccaaaagtcagttcaggaatacctagaaagtgagagagaaaatattaatagaatcattaaacaaatgttggctgttggtgaaatattcaaggctgaaaatctgcaggtaacaatatatacacatgatttgtgcctgtgattcccgatataatcatggaacctctctgctttatatttcgtttcaaacatttttatccatgtataacaacgtatagttctgcagttttcgaccgagcaactggtaaaggaagttgagaactctatagaagagttcaaacactataatcaagactatgatgaggggagcatcaagcagcaggtttttaactgcttcatctgatatttccaattctgaataccttcagttaactgagtgtgggaatcttctcttgatcatgttgtgacaaccttttgagctactaaaatatacccactaattgataaccattaatgtgcctaatatttataagcataataccatgctaaataaattatctgtcctgcgatgttgcttccacaacttgaaatccttggtattaatatgtaactatgtctcgtatgggggttgaaccatgcaggttcaggatgttctagaggcagcgaaggtgctcgaatggctcaaggagaactgcattattgagtacattagaccatgaatctagtgtcaaagacagctggtgtgaaaattttgctgagttactttggttctactcgtacagataaaatgaagccttgtgccaactcattgcctaccgatggaatgtaaagtttgctttttatttatagcacaataaagagatatggttcacaaatagattgcaaatttctttcaaattctttgtattatatgtctataattgaacatggtacagataattgtcccaaaaagttgataataaggaatgaatgatgcgttgtgctactttttttttaggg</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0308000, RefSeq:Os06g0308000