Os06g0319600

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Revision as of 09:16, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0319600| Description = Poly(A) polymerase, central region domain containing protein| Version = NM_001064042.2 GI:297605719 GeneID:4340886| ...")
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Gene Name

Os06g0319600

Description

Poly(A) polymerase, central region domain containing protein

Version

NM_001064042.2 GI:297605719 GeneID:4340886

Length

6381 bp

Definition

Oryza sativa Japonica Group Os06g0319600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:12471972..12478352

Sequence Coding Region

12472192..12472359,12472454..12472531,12472616..12472723,12473086..12473148,12473228..12473389
,12473628..12473741,12473867..12473929,12474119..12474448,12475074..12475238
,12475314..12476249,12477891..12477961,12478111..12478162

Expression

GEO Profiles:Os06g0319600

Genome Context

<gbrowseImage1> name=NC_008399:12471972..12478352 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:12471972..12478352 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atttctgagctagctagtaagaggcagcagaattcctgtggggcttattgtagacctgtctctatggcgaagagtaacaatggtaatggctacctcggtgtgactgagccaatctcattgagtggtccaactgagaaggatgttgtccgtacgcaggaggttgagaagtgtcttgctgacgctggcctgtatgaaagccaagaggaagctgtctcacgagaagaggttttaggcaaactggaccagattgtcaaggcttggattaagaaggcaactcgagctagtggttttggcgaccaatttgtgcaagaagcaaacgcaaagatttttacttttggctcataccgactaggggttcatggccccggtgcagatattgatacgctttgtgtgggtccaaggcatgcaactcgaactgaatactttttccaggctctttatgatatgctagttgatatgccagaggtcacagagttacatccagtgccagatgctcatgttcctgttttgaaattcaaacttaatggggtttctattgatcttttatatgctaatcttacacatgttgttattcctgaggacctggatctttcgcatgactctatattgcacaatgttgacgaacaaactgtccgaagtcttaatggatgccgagttactgataaaattctacgattggttccaaatattctgactttccggacaaccttgagattcatgagattttgggcaaaacgccgtggagtctactcaaatgttatagggtttcttggtggtataaactgggcacttcttgttgctcgtatatgtcaactgtacccaaatgcatcaccaagcatgttgatatctcgttttttcaaagtctacagcaagtggaagtggcctaatcctgttatgctttgccatattgaagagggttctcttggtcttcttgtgtgggacccaaggagaaattttagagacaggggtcatcatatgcctataattacacctgcttatcctagtatgaattctagctataatgtatctatcagtactaggcatgtgatggtccaagaattcacacgagcttctgatatctgtcaggcaatagacgaaaggaaagcagactgggatgctttgtttgagccatatccattttttgaatcgtatagaaattatctaaagattgagatcacagcaagaaatgaagatgacctcaggaattggaaaggttgggtagaatcccggcttcgtacgcttgtattaaagattgaacgatttacacgtgagatgctcctctcacatcctaatcctagagatttcatcgacagctccaggccattgcattgtttttactttatgggtctctggaaaaaacaaatcagccaagctcaagaagctgagcagtatgacattagagcaattgtgaatgaatttaaaagcaatatccatgcatatcaacactggagagaaggaatggaaattgaagtttcccatgtaaaaagaaaagatatcccatcatttgtttttcctggtggaatccgtccttctcgcccatcaagaacagttggcaaggaagctcgggctgtttcaagaagtaatatttcagctaatgttcaagaaagaaatgttccaagcatggcccagcctatgccatataagagtagtgaagtaaacaaaattccgtcagatcctcatggtggctatcagtcgcaagaaagaaataatgcagtggtctctagtttgccctgtgaagaaactggccatatgttcaatgggtatgcaaatctccatacagaatctgttgagctggaacacttgagaagctacaagggaagtacatctgttcctgagaaccatgttgtgcatgatttagtcaagccaccagagagcatgccacctaactcaatccatgtttatccaagtccaacaaatggattgggccatcttttagatagttcttgtaaaaaaccagcagacatcattgtaaataaaaccacaaatttctcttcagctgtcctagcagtacctgatgaacttgatgagctggattctcatcaagtgaaggtaaatcagaaagatttaactgcagtagatcaaggattatctttggagcataaagttggaagtaatgggggcaaagcaggaaccacaggttcacctgataacaatcatctgaagcgtaaagctgaggaagagcttgagccacttgagcttgctgccccactagttcgccctcctgcaccaacgtccatgacccagaggaggcccttgagactgagattgtcaactgtggtgcaacccaaacctgctgaaggaacttcatga</cdnaseq>

Protein Sequence

<aaseq>ISELASKRQQNSCGAYCRPVSMAKSNNGNGYLGVTEPISLSGPT EKDVVRTQEVEKCLADAGLYESQEEAVSREEVLGKLDQIVKAWIKKATRASGFGDQFV QEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATRTEYFFQALYDMLVDMPEVTELH PVPDAHVPVLKFKLNGVSIDLLYANLTHVVIPEDLDLSHDSILHNVDEQTVRSLNGCR VTDKILRLVPNILTFRTTLRFMRFWAKRRGVYSNVIGFLGGINWALLVARICQLYPNA SPSMLISRFFKVYSKWKWPNPVMLCHIEEGSLGLLVWDPRRNFRDRGHHMPIITPAYP SMNSSYNVSISTRHVMVQEFTRASDICQAIDERKADWDALFEPYPFFESYRNYLKIEI TARNEDDLRNWKGWVESRLRTLVLKIERFTREMLLSHPNPRDFIDSSRPLHCFYFMGL WKKQISQAQEAEQYDIRAIVNEFKSNIHAYQHWREGMEIEVSHVKRKDIPSFVFPGGI RPSRPSRTVGKEARAVSRSNISANVQERNVPSMAQPMPYKSSEVNKIPSDPHGGYQSQ ERNNAVVSSLPCEETGHMFNGYANLHTESVELEHLRSYKGSTSVPENHVVHDLVKPPE SMPPNSIHVYPSPTNGLGHLLDSSCKKPADIIVNKTTNFSSAVLAVPDELDELDSHQV KVNQKDLTAVDQGLSLEHKVGSNGGKAGTTGSPDNNHLKRKAEEELEPLELAAPLVRP PAPTSMTQRRPLRLRLSTVVQPKPAEGTS</aaseq>

Gene Sequence

<dnaseqindica>221..388#483..560#645..752#1115..1177#1257..1418#1657..1770#1896..1958#2148..2477#3103..3267#3343..4278#5920..5990#6140..6191#agctgaaaccccgtgttaggtctgcccctgcctggaatccctggatgctagctgctgctgctgctgtgctcttgtttgttgatggttcatgtaattctccccttcctcctgtaatgtttggaagggtttagggtaataggaaagaggagtttgtaagatagactcgggaaaagattgaattttacgttgtaaagaaggttaaaagcaagtgaaataataaatttctgagctagctagtaagaggcagcagaattcctgtggggcttattgtagacctgtctctatggcgaagagtaacaatggtaatggctacctcggtgtgactgagccaatctcattgagtggtccaactgagaaggatgttgtccgtacgcaggaggttgagaaggtaggagtttggatggctagtcgataagtgactttgacaatttcttgtttgatcactatgtttgtaatggtattgtgattttgattctgatcagtgtcttgctgacgctggcctgtatgaaagccaagaggaagctgtctcacgagaagaggttttaggcaaactggaccaggttgagcatatgtcctttgtgtgcttttctgattgtactttgtgtaggtgatgtgcaattattagtaacccttgtctttggcagattgtcaaggcttggattaagaaggcaactcgagctagtggttttggcgaccaatttgtgcaagaagcaaacgcaaagatttttacttttggctcataccgactaggggtactctgcacctcatgcatattttattcagattgtaaaagatcgtgttcaattaatatagccattaccttttgtgttatatggtttgatgctgtttaatagaaaagtgtcctgcattaaaatataggataactatccttttgctttcttgttttgtctgacattgccattagatatcagtatgattggatgcacatacatctgttcgttttggttcactgataggtacactgttttgctgcatgcatatgaaggttcaaatttagcaatacctgagacattcttgcttgttggcagtttttgttggtttggtacccatctatgccaagagttgtgaacattgttccttggtattttcctaggttcatggccccggtgcagatattgatacgctttgtgtgggtccaaggcatgcaactcgaactgtaagaggaactgctgtggatttcgtggaattttgagtgcattgcatagtttgctttataaaatgcacttcttttgcaggaatactttttccaggctctttatgatatgctagttgatatgccagaggtcacagagttacatccagtgccagatgctcatgttcctgttttgaaattcaaacttaatggggtttctattgatcttttatatgctaatcttacacatgttgttattcctgaggtaagttctgttttatatctttcttagtgtaacaggcagtagtctggggtttcttgcatgctacataactagattgactgtatggaagtgctcacttcttatatttattcattttatatcttatgatgtaatacaatattacacttatgaatgttttttatggcacttccttttaacattggttgctccatcattttcttataagcatccctaataatgctatatcatttcattgcaggacctggatctttcgcatgactctatattgcacaatgttgacgaacaaactgtccgaagtcttaatggatgccgagttactgataaaattctacgattggttccaaatattctggtttgcacctcctgcattgtctatttttcagatgatatgctaaatgctctttggtggatacggtatgatggccgtttattcgcttcagtaagtaactttgcatgacccattctttccaaatgcagactttccggacaaccttgagattcatgagattttgggcaaaacgccgtggagtctactcaaatgtatgacctggacttttgtctgttcatgcaatattacattccatgtgtatctgatcaacagttgttcgcatatttattatttgtgggctcgtggcctatgcatagacataatgtgtgcgtatgtgcgtgtgcgtgtggattttttttgttttacatgttttcttaacgaaagttaatgtctctttccaggttatagggtttcttggtggtataaactgggcacttcttgttgctcgtatatgtcaactgtacccaaatgcatcaccaagcatgttgatatctcgttttttcaaagtctacagcaagtggaagtggcctaatcctgttatgctttgccatattgaagagggttctcttggtcttcttgtgtgggacccaaggagaaattttagagacaggggtcatcatatgcctataattacacctgcttatcctagtatgaattctagctataatgtatctatcagtactaggcatgtgatggtccaagaattcacacgagcttctgatatctgtcaggtacatctcattgcagagttgtttttattttagtagtaaacatgaattgctgctaactggtagaggagccttactgctggtcaatcattttgatctgttggataacccaaggtgcaaaatagcataaattttttttctgatgcatcagtcctaaattcataattctgaaaggcaaactgacaagtctaagatacagtgcccgctactttatataatgagagcatttgaccatgtttctaaaagaaaaaaacacgaagcatctgaaatacttatggtcaagaaaacatggttttcaaaatgcatctttgacaactaatttctcctacgaatatttgtaaaacctgacaaatttgtgatacttggaagctatttgagaaaaatctagacacgattttcatgaatcaaatctaaatatttaaaaacatattgatgttcaaagttttaaaagtttgagtcagatgtctgaaacaacatgttttcttggccagagagagtacttgtcggaggattcatacattttctaaatgttgtgatatatttgcagcaaacagtacttttttaaatgatcatcgctgcaaataaatttcatgtttgcatttaatgtctgtttgattacttattgtaggcaatagacgaaaggaaagcagactgggatgctttgtttgagccatatccattttttgaatcgtatagaaattatctaaagattgagatcacagcaagaaatgaagatgacctcaggaattggaaaggttgggtagaatcccggcttcgtacgcttgtattaaaggtgatgtactgaaacatttctttcttttaagaaagtaagctgtattgtaatgtacctttatttgcttttattcagattgaacgatttacacgtgagatgctcctctcacatcctaatcctagagatttcatcgacagctccaggccattgcattgtttttactttatgggtctctggaaaaaacaaatcagccaagctcaagaagctgagcagtatgacattagagcaattgtgaatgaatttaaaagcaatatccatgcatatcaacactggagagaaggaatggaaattgaagtttcccatgtaaaaagaaaagatatcccatcatttgtttttcctggtggaatccgtccttctcgcccatcaagaacagttggcaaggaagctcgggctgtttcaagaagtaatatttcagctaatgttcaagaaagaaatgttccaagcatggcccagcctatgccatataagagtagtgaagtaaacaaaattccgtcagatcctcatggtggctatcagtcgcaagaaagaaataatgcagtggtctctagtttgccctgtgaagaaactggccatatgttcaatgggtatgcaaatctccatacagaatctgttgagctggaacacttgagaagctacaagggaagtacatctgttcctgagaaccatgttgtgcatgatttagtcaagccaccagagagcatgccacctaactcaatccatgtttatccaagtccaacaaatggattgggccatcttttagatagttcttgtaaaaaaccagcagacatcattgtaaataaaaccacaaatttctcttcagctgtcctagcagtacctgatgaacttgatgagctggattctcatcaagtgaaggtaaatcagaaagatttaactgcagtagatcaaggattatctttggagcataaagttggaagtaatgggggcaaagcaggaaccacaggttcacctgataacaatcatctgaagcgtaaagctgaggaagagcttgaggtctgttccctcacatctgaattacttctttaggctgcaattatatattatgttttacgcattttactatagtggcttatgatttaactttatattttattctgacctgcattttaatacatttttttttgtagaaatacgccatatatacttgggtaaatgatgaatgcttttttacttttttaataagatgttacctgtgattcctaatgctgctctattagaattgattgctctatatcaattgtttgcaaacttcctattccaggaaagcatttttttttcttatttactttacttcatggcgcatcatggttgtttgtactgtctttatgcttttactgtgtccggtttcttacttgccgtttgacatggactccaatgcacatatttgcccaatactacataaaagctattaaaaacataatgaaataaaccatttcttattacaaattagtattaaaaaaatataatgatatgaaatcattcttcattacaaataaaagtgccatactcacatgacaaaccttaagatttgccattattttggtgaaagttttaatgtttggttgcttgtattcacatatctatgagaataggagggatgaagtaatatggtgcttttcttttcttagaatgttaatgtgttctgtttttctaatagaacagaactgttgtttaagtgccttttttgcatgttaagactgctttagttttagttaggctgtacatgtaatctattcgaaacttttaactttgtagcttagtcatgtttttcttaatggtacattacaatgcatttgtatttatttgaattttcattccacaactttatttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatctgtccagtcttacttaaatgaagagagattagctcagtacttagtagcacaaagagctataaatagaaaaatactatccatatgaggatgacagatggttcccagggccacatgtcgctgtcacattggatgatatcttcccatttatacctctttgcgaaggcagtgagcaaaactgtacttgaaggaattatactaaaattgttaagaatatatcttcaaaaaaatgtatggctgtatccatagtaagtaacaattttcatgagcagacaatttaaagatgggtgtaaaaatttattgatttgcacactgtattcctctcttctgttgtcttgtaagaaagcagtgttgatcaattacataacagattatttgtcaagctatgtatacaagtagaagaaaggcctatcatgtgtcttctatggcatgttgtttcgatctttatactggaaaacatctattgtatttctggaaatgctttttggctggtaggcgtcaatgatggctcctgttttacattcttattacactgaataagttctcttggtttttttttcccatgttgattaactgcgacagctataatgaaggcttttctgttttacattcttacactgtaaaattctctctttttttcatgtcgattaactgctactgttatattacacatttaaatgttaatgctggttttgttcatttgtttgaaaatagccacttgagcttgctgccccactagttcgccctcctgcaccaacgtccatgacccagaggaggcccttgaggtacttcttactgcacagtttaatagtccatatattcctcatttaaatgcagtgcaatttctaatgaatctgtacatttgatggttctgattctttttgtcaattcctacctgtaatatattgttctgagaacaaattgttttttcaagactgagattgtcaactgtggtgcaacccaaacctgctgaaggaacttcatgaatcgagttgcttggagacatggagattattctcttcaagggagggaggccgcctcaagctatccggtcctgtagagctgtgtaacggtagcaggaaaaaggcactgaaatgtctaatagagcaacatgtaaactaaatattgatgtaaaatccaaaattccaagttctaataaaattatcgtgttttgcc</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0319600, RefSeq:Os06g0319600