Os06g0326000

From RiceWiki
Revision as of 09:17, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0326000| Description = HMG-I and HMG-Y, DNA-binding domain containing protein| Version = NM_001064062.1 GI:115467855 GeneID:4340908| Length...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os06g0326000

Description

HMG-I and HMG-Y, DNA-binding domain containing protein

Version

NM_001064062.1 GI:115467855 GeneID:4340908

Length

5120 bp

Definition

Oryza sativa Japonica Group Os06g0326000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:12826543..12831662

Sequence Coding Region

12826929..12827138,12827439..12827600,12828513..12828644,12829808..12829860,12831012..12831591

Expression

GEO Profiles:Os06g0326000

Genome Context

<gbrowseImage1> name=NC_008399:12826543..12831662 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:12826543..12831662 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcaaggaggggccatgtcggcggcggcgacggcgacggcgagcgaggcggcggcgtacggcggcgtgggcatgagcaagagcggggccctgcagcctcagccgccgcacggcgccgccgccgcggtgcgcctcgcctacacccacgacggcatcgcggtgtacaagcacacgccgccgccgccggtgtaccagacgccggccgccgtcgccgccccgtcgccgcccgtccgcggcaatggcggtgcgcccgcgtccgccgagcagcacaagcgcaagcgcggccgaccgcgcaagtacgccgtcacggacgtgccgctcgccgtcgtgccaccctcgccgccaaaggctgcggccgccgccggcgccagcgccgcccagtctccggcgacgcccacgctgccgccgggcttctcgtcgggcctggccgcgtacggaggcgccgcggcgagccagccggcgccacgtcaggctccgccggcatccgggcgcgtgctacctcacaagaagaggggccggccgccgggctccggcaacaaacagcagcagcggcctcagcacaagaaggcagcagctccaggatctagtgtgattggattgaagcctagcgtcatcacagtgcaagttggagaggatgtagtgtccagggtgatgtcctttactaagaatggatgggctgtttgtgttctctcagctaatggtgctgtatccaacatgacactgcgtcaagcaggttcttctggtgcaacaacagtaaattatgagggccattttgagattctttctttgtctggctcatatctgctgtcagaaagtgttggcctgagcagtcgagctgggggacttagtgtttcacttgctggtcctgacggacgtgttttaggtggcggagtagcaggacctctgaatgcagctacacctgttcaggtggtcattggaagctttctggctgatgtgaagaaggggcacaaacaggccatgccgagtggggctccgtatccaggtgtgagcactccaacatccagagggactcccagtggatcctcaggtgggcctggtagccccctaaaccaaagtgcaagtggctcatttaacaccagcaaccaacaagccttggctgacttcccatggagatga</cdnaseq>

Protein Sequence

<aaseq>MQGGAMSAAATATASEAAAYGGVGMSKSGALQPQPPHGAAAAVR LAYTHDGIAVYKHTPPPPVYQTPAAVAAPSPPVRGNGGAPASAEQHKRKRGRPRKYAV TDVPLAVVPPSPPKAAAAAGASAAQSPATPTLPPGFSSGLAAYGGAAASQPAPRQAPP ASGRVLPHKKRGRPPGSGNKQQQRPQHKKAAAPGSSVIGLKPSVITVQVGEDVVSRVM SFTKNGWAVCVLSANGAVSNMTLRQAGSSGATTVNYEGHFEILSLSGSYLLSESVGLS SRAGGLSVSLAGPDGRVLGGGVAGPLNAATPVQVVIGSFLADVKKGHKQAMPSGAPYP GVSTPTSRGTPSGSSGGPGSPLNQSASGSFNTSNQQALADFPWR</aaseq>

Gene Sequence

<dnaseqindica>4525..4734#4063..4224#3019..3150#1803..1855#72..651#ttgtgcgcggagggggtagctgggcgaggtcttggggggtgatttttgcggagaaattctgttgttgttggatgcaaggaggggccatgtcggcggcggcgacggcgacggcgagcgaggcggcggcgtacggcggcgtgggcatgagcaagagcggggccctgcagcctcagccgccgcacggcgccgccgccgcggtgcgcctcgcctacacccacgacggcatcgcggtgtacaagcacacgccgccgccgccggtgtaccagacgccggccgccgtcgccgccccgtcgccgcccgtccgcggcaatggcggtgcgcccgcgtccgccgagcagcacaagcgcaagcgcggccgaccgcgcaagtacgccgtcacggacgtgccgctcgccgtcgtgccaccctcgccgccaaaggctgcggccgccgccggcgccagcgccgcccagtctccggcgacgcccacgctgccgccgggcttctcgtcgggcctggccgcgtacggaggcgccgcggcgagccagccggcgccacgtcaggctccgccggcatccgggcgcgtgctacctcacaagaagaggggccggccgccgggctccggcaacaaacagcagcagcggcctcagcacaagaaggcagcagctccaggtataatgctttgtcttgtgccttgtttgttgtagcaactactcacttcgtgttactatattggatatatgatggtattcctttgtgatacatgtatagttgtatactctccgtttaacaaaccaatctagggaggatttgacataaccttctgttcagattcattatcctaggttatatcaaattctctcttaaattggtttattttgcgagggagtgagagaatgctacttcaatcagtatgggcaaaagggcatctggtattttttggttgttgtcgtggtgacaagcagacagcagcacgccataagagtatgtaggcatgaggatgaaggggactagagttgtgggggggagggaatggaatatctgctgatgatgataatgacctttatgcccttggtgttgctatgcgcttgtagtagttgctggaagtttctttctgaggatgaacccaactggaagttcgtgggttgtgttcagttgttctactgtattcaggatcactgcttcaaggtgaattggtgtagtagtgatcatattatggatatgagaacctgtcctgctagttcattctgaaaagtaacactgctttagttctatttttgcttatgagtaattgtggttttagctcatttatcctctgatgtctgtggaataggtgtttatgtaaaccctgtcttgtgggttttgttgatctacattgccaataaagatgttctaattccatcattaaaattaattgtttgttgaaaaagggagtatttgttatccttttccttagctggaattatctggccattcatccctttttgaatttgattctgggaattttagtaacaatagttgcaattgtttcttagctggaattatctggccattcacccctttttgaatttgattctgggattttaataacaatagttgcaattgtttttttgcctctcatagttagtttcctaatgcatggctactcttagaatcctgtgttgctatttcttcaagaattataccaaagattgtgaaacatttggaaggtgttagttctatctagtgccttatgctcatgagtgctttgaatcatcagtttatctttattacaatattatctgtacttcattaatatgaaaattttctttgaattcttgcaggatctagtgtgattggattgaagcctagcgtcatcacagtgcaagttggagaggtacagtgttactatcccaggcatatcctagagatgcccttttgtggtgttaggattttcttttattaagatatcatcatatttggtggtctaacttacaaaatctgtacatgcccttttaggcaatatgctctgtttttaattttttagctgtactcagtatttattgtgccaatgaaggtccttttttatagtttttgatgcaaagtttgttcttactatgtgattgctgtttctctatcatgctttacatatcaatttcttttaattttttaatacaatgtctttttcttggtgtactggtgatgaagctttgcttaattctctaggatgattaactttccatttgtcaacagtttttgcaacaagtacggtctatctctattcaatacactttaggtgtaaagttagtttgttagttgtttcatcaagctccctgcttgaatgcacaccagtcaaatgaatatttttcattattgtacatttcaaatctttaactgaactcaagctataataaattttattttcttcattcagcctcatgatatcaatttagtatttgttgctgccaatttttttttgtgtgctttttttattgaattgccagatgcaaacagatgaatacctctatttgcgtaaatttgatctgtccatgtattctcttaaatgattgacctattcccatcaagaattattccctaaataatgcatatttgtgaatgataattcttcaagaatttgtggtgataatatacagaatatatggaaccagtttcacgtccctttgaattgtatgcttattattagttcatatggaccgtcaatagtaatgtgcaaacattggttggaactcttttttttttttttgaatctgtgtacttattaatataattcaataatttaataaatatatacagggttgctataaatttcgtctgcacagaaaataactgaattcagatatgcatgacctatgtcttattttagtctttttcagttgaaaatatgtaaaaccataataaaattatatgggaacatgctgtagctaacattcgttgtttgtgactggccttcccatgtttttcagctgttctattcaaagttcttttgtacctctcttttagtcatatggtaaactgctaatgaggatttgtgattttcaggatgtagtgtccagggtgatgtcctttactaagaatggatgggctgtttgtgttctctcagctaatggtgctgtatccaacatgacactgcgtcaagcaggttcttctggtgcaacaacagtaaattatgaggtttgatccattttctcagtaggaattttctatattctcccttttttttaataaattgcactacagtgtgatttgtccaaaccagtagaagaaatattttagtatgctgtgcagctggggtattgagccagtgacctgaatgttccagtccacagttcaaaccaagtgaatttaagctcattcttggtctgtcatgacccgaggccatgacgagctggggtattgagccactgatctgaatgttccagcccccagttcaaaccaagtgaatttaagctcattcttggtctgtcatgacccgaggccatgacgggataaacaccgccgggaagatagccaggcggtgtcggcccctggagaagggatgtagatttcggctaggaaggaagagattagactaattgatattcattgcttaatgataatagatacagtcccatccttatatagatggtatagcttgacctctaagtgaggattcaatataatcttatctctaacttaactaataatcttatctctaacttaattgatatgggctgcctatgggcctccgccttccggcccattgcacatgacatggtctgtagacggcatagaatcaatattattgaaccatatggtctgactagaaaaaaaaagcattggtttgaccggtgaaccttgaacctatgacttcaccagtccaatttttgtactatgatgtacctcagctcctgccaaactttcaagattataatggcagaagtattgtgaggttgtatttacgaaaagtaccactttatgcctttcaccattattgcattcaaagcatacaattagtatttttgaaataaatgttgtttgaaattttgaattctaaatttgcatacagttttcaaaatgtcataattctttgcgttcaacgtgcagggccattttgagattctttctttgtctggctcatatctgctgtcagaaagtgttggcctgagcagtcgagctgggggacttagtgtttcacttgctggtcctgacggacgtgttttaggtggcggagtagcaggacctctgaatgcagctacacctgttcaggtttctacttttcactgaaagtacttgatattgattatctgaccctaatgttgatatgatgaaaacatcaatagttttggatcttgttctcttttgtttctctactagaatgccctatgctgtcaattagattaaccatgaattataactcacttgccaaatgacattatgcaacagagtactatctctacgaaacatagttgaacgcaacgttttcaaacattggctttgtccttaccaaactttcatgctttcaagaaagtttgtctaatggattgtttcattgtacttggtgttcaggtggtcattggaagctttctggctgatgtgaagaaggggcacaaacaggccatgccgagtggggctccgtatccaggtgtgagcactccaacatccagagggactcccagtggatcctcaggtgggcctggtagccccctaaaccaaagtgcaagtggctcatttaacaccagcaaccaacaagccttggctgacttcccatggagatgagcttggtggttctgatgatctttcagccttcagctaaagtcattggtggttctgatgaggggattggggtttgtagctattggacctcaagaggtaaacataatttggtggtttcggctgtcgcttcgtttattagacaggttgttatctctcaagtttaggtgctgaaaatgtcagctcttagtttaggtgctcctagacacctagtgttcagagaaatcagcttgaaaggaaaagctgagaaaaaaatttgttggcttcaatgcacccctggatgtcatgtggttaagttaccatgtcgaaatgtgtggtgctgttttaaggtacacctgttcttattactctttgtttagtgagggaatgctgcatggttgcttatgcacacg</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0326000, RefSeq:Os06g0326000