Os06g0338900

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Revision as of 09:17, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0338900| Description = Nucleotidyl transferase domain containing protein| Version = NM_001064096.1 GI:115467923 GeneID:4340947| Length = 70...")
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Gene Name

Os06g0338900

Description

Nucleotidyl transferase domain containing protein

Version

NM_001064096.1 GI:115467923 GeneID:4340947

Length

7002 bp

Definition

Oryza sativa Japonica Group Os06g0338900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:13582719..13589720

Sequence Coding Region

13583081..13583158,13583390..13583506,13583741..13583845,13584505..13584597,13584683..13584919
,13585005..13585092,13585183..13585232,13586351..13586409,13586501..13586720
,13586815..13586895,13589238..13589315,13589407..13589502,13589574..13589639

Expression

GEO Profiles:Os06g0338900

Genome Context

<gbrowseImage1> name=NC_008399:13582719..13589720 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:13582719..13589720 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggacttccaggtcgtcgtcctcgccgggggcacctccgagaagctctcgcccctcgtctccaaggatgtccccaaggcgctcctccccgtcgccaaccgccccgtgctctcctacgtgctcgacctcctcgaggccagcgacctcaaggacatcatcgtggtggtggaggggcaggaggccgcgcgactcgtcggagcttgggcctcgagcgcctacctagaccgccttctcgtggaggttgtggcagttccagaggacattggaacagctggtgcactacgagctatttcaaagcgactgactgcaaatgatgttttggtgattagcggcgacctagtaactgatgtacttcctggggctgttgctgctactcatagaagaaatggtgccgctgttactgctttactatgttctgttcctatcagtggtccttcagatgctgcttcttctggagggaaagataaagctaaaaaaccaactcgactgaatatagttgggctagacataacaaggcaattcttgttgcatattgtatcaggaaccgatgttgaaaaagatgtacgtgtttacaagcgaaaaatccgagctgtaggcgagatggaaattcgaagtgatctgatggatgcacatctgtatgcttttaagaggacaacattacagaatatactggaagagaaagaatcataccgtagcattagacttgaagtcctaccatacttagtgaggagtcagttgaaatcatcttcatcaggaggtgagggaacaaccgttgatgaaactggcgatactacagttccatccaatagtcatttgcagtgtctatcacagcatcgcatacttgcaccatctgcttttaagaaagatttgttatcatctggaggaacatataggtgctgtgtctatattgctactaaaagcaagtactgtcatcgtttgaactccattcaggcatactgtgatatcaaccgagatgttgtaggggatgctagtcacttgtccggttattccttctctgcacagaacaacatcatccatccaacttctgtgcttggatcgaagactacaatcggaccacaatgcatgcttgctgagggttcacaattaggtgacaaatgtagtgtgaagcgatctgttattggccgtcattgtcgaattggttcaaatgtaaagattgtcaattctgtcgtgatgaaccatgtggttattgaagatggttgtcacatacaaggttctgtgatatgcaataatgtgcaacttcaagaacgtgctgttttgaaagattgtcaggttggtgctggttatattgtaactgctagcagtgaacacaaagcagaatctctcagcaagaaagtagagcgattttga</cdnaseq>

Protein Sequence

<aaseq>MDFQVVVLAGGTSEKLSPLVSKDVPKALLPVANRPVLSYVLDLL EASDLKDIIVVVEGQEAARLVGAWASSAYLDRLLVEVVAVPEDIGTAGALRAISKRLT ANDVLVISGDLVTDVLPGAVAATHRRNGAAVTALLCSVPISGPSDAASSGGKDKAKKP TRLNIVGLDITRQFLLHIVSGTDVEKDVRVYKRKIRAVGEMEIRSDLMDAHLYAFKRT TLQNILEEKESYRSIRLEVLPYLVRSQLKSSSSGGEGTTVDETGDTTVPSNSHLQCLS QHRILAPSAFKKDLLSSGGTYRCCVYIATKSKYCHRLNSIQAYCDINRDVVGDASHLS GYSFSAQNNIIHPTSVLGSKTTIGPQCMLAEGSQLGDKCSVKRSVIGRHCRIGSNVKI VNSVVMNHVVIEDGCHIQGSVICNNVQLQERAVLKDCQVGAGYIVTASSEHKAESLSK KVERF</aaseq>

Gene Sequence

<dnaseqindica>6563..6640#6215..6331#5876..5980#5124..5216#4802..5038#4629..4716#4489..4538#3312..3370#3001..3220#2826..2906#406..483#219..314#82..147#aaacgatctctcctccttccctagtccagactcccgacgcgaccaagcgccgccgtcgccgacgcttccccgccgtcggagatggacttccaggtcgtcgtcctcgccgggggcacctccgagaagctctcgcccctcgtctccaaggtcctctcctccccaccgccgtcttttaactccggcgccctaactgtgaccctcttcctcttctcccgcaggatgtccccaaggcgctcctccccgtcgccaaccgccccgtgctctcctacgtgctcgacctcctcgaggccagcgacctcaaggacatcatcgtggtgagcgcgcgagctcgcgtgtttctgcttggacgcggcttgaaaaatggtggggggattgtggctgatgcgggtgtttcgcacggtgcaggtggtggaggggcaggaggccgcgcgactcgtcggagcttgggcctcgagcgcctacctagaccgccttctcgtggaggtgagctcgaagcctaatttggctttcgattgattgaagtatgatagaccctaggtgtttccctttgctgtcagaatcagctgaatttatattcatgtttctttctttgttagatgtcatgggtatctatgggctaacttttgcatagtttgcaaaagaatttctcttgtggagatatcattgaatcattttgttcaggttgctgtattgtatggatgaactccttttaattttcgtgtatgatggagtttttttcacggagatagtctcgtggtgccgtgcatattatacagttgtgtgcttgcttatctgggttctcaaggtaatgatattaagaaggtttgaatgctaaaggagttatggtatatgaagcagcatgatatggtcagcttcagaaagcatgatataatcaagtttcctagttctaaggctgttatgattattttttagtgaaaattggttggctaggtgtatttattgtgaaatcagtcaaagggcctgtttgggggagctttagattctgagaagcagctgtttggtagccagcttctaaaaatatggaaaagctttgaaacccagcttctccagcttctggcttcttagttcatttttcagaatctgtaactacagattctcagaagctgtggactgtttggggcagcttctaccagaagcagcttttgggaaaagctgcagctgggacaagctcccccaaacagggccaaaaaggctgtgtacctattcgtctaaattaattgaaatgctgcccctctatgttcagtgtctgtccaatctattacgagctggccttttgttttggaaccaaaggaaaaccccagtggcagatttgtattgcgaaagaatgaagccagtgtctactgactacagttggcgttttacatcccagataaagcttatttattagggcatgcgcaatgtatcttacccaactagtaaataagatgggccccatgaccaggaggtagtaagctgcaactcttctcacaatgcttatatgagtgtagtggtaaacaaggtggggtccacctgaaaaaatccatccatcccaaccctccattacctggatcctgtcagaatcttcatattttatttggttgttgccggcaatagcacaaataccaggtagtaactactacctcttcccacaatgcttactattgggtagtaggcttgaaataaatgcttgttacctggttttttgccacattgtggttgctcttaggaatttccactattctgcatttccctttgaacataagatctacattgtagttattgcaatctccaatcccgccctgtccttttaagtttggggcatttgtaaatttgccaccggttttttcaatattgcaaggatgccactcgaatgacagttctagtggcatttttgcaattttctagtggcaattttgcaataacgattcaaagtagtggtaaatttgcaattgcccctttaaggttcaaacataggcgagcagtctaaatggttagaacttacaatatttcacatagcaatagaggaacatagaacattgttcatctctttttgtttaatatcgtagtttgtttttcttagcagagcgtggttgattgattggacaaattagatgggcacattctgctgatatcttgcatgttaagttgttattcgttgcttttgtttgaatatttgacatccatcacaatacgtagtttaacattggcttgtggctaactggctacttgaatacatatatgtgtatgagcatattttgatgcactcttctgcacttttttcactttgatacaccttccaacagaatgaagctaattcaatatcataagtcttctgtgaaacttaaaataatgtgtgattgaagtctttgccctgtctaatcattgcttttcattaatatgttataatatgaaaatttcagcttctgatagagagttagagacacagtcagcatgatgtattgctaaaatcctccattttttagcggcttcaactccttgggtttatgtttggatttcatttatatttttgtctgtgttatcttctaatcattagttttagttgtccattagattttttctttggttcctcaaattaaaataggccaatttgcctggtaccatcgcaaaaatcatggaactggaaaatactaatgtatctgtcattgatgtgggtccaggacccacatgccattctcagatacgctcgtattttgcaactcacatatctcaactatagtattttccgattttttttattgaaataggtctcgtgtctatgtggagtgtatcagtctttgggagtaacttatctttctcttgtataggttgtggcagttccagaggacattggaacagctggtgcactacgagctatttcaaagcgactgactgcaaatgatgttttggtaatgttaatgcttttatagaaccttaagaatgctaaaatatgcatgctaagtgtaatgtagatattaatgtattagaaccttgttacaataggtgattagcggcgacctagtaactgatgtacttcctggggctgttgctgctactcatagaagaaatggtgccgctgttactgctttactatgttctgttcctatcagtggtccttcagatgctgcttcttctggagggaaagataaagctaaaaaaccaactcgactgaatatagttgggctagacataacaaggcaattcttgttgcatattgtatcaggtttgtatgtcttgttaaaaaggttttaaagttgattagtagctgttattcatgaatcatgattcatatgcttgtcgattccgactggcaggaaccgatgttgaaaaagatgtacgtgtttacaagcgaaaaatccgagctgtaggcgaggtacggaacgtgtaaccctgtatatgaaatgattttgtttgctaacagaaatatatattggctgtgctgcacttgttatgtgccataacacatgacatgtcacaaaaatatctggtaaaaaaatatgttgagtgtgatagagatttcaaaacttaattttagtttttgagaagagctcaagacatatctctattcttttggttcttggtaggcacaataaagtttctttgtaatgggttcaaggcaatcaaactttactgagacaggcagtcaggcactgtataacaggcttcaccatataatatatcctgcattattagtattagcaaattcttttatatggcagcagggaaggaatagtcagaaagcgcgctttctggtcgagcaggcttgatctgcatggcgagaggcttctgttattactgcttggtgacaataaagaaacatagagcactgagggcatattattttaaatagaagcgccatgagaggggtcccatttaaagtttaaaactcctgtttgaataacatccagaaaaagcaggactcaagaacaaggctaaagcttcatatgctccttttccctataggatttaaagttctccatttctcctttggttcaaaaagggcttcatgatttttattgtggatacgtgtgcattctaaggattcttgctttgggatttcatataaatcttaacttgtcgctatttcccccaaaagattacctcatccaaacacattgttaagggtagtgcactgactgactggagcagtacatctaataagtgggacctgacaaaggagggaaaactttttagagatattagctgagtacttcagagttccttttaaggatagtcatttttgtctatgtattcttgcattaatttagttggaaattcagaattgtctgagcatgacttgtgatgaccatgaatgattgacagggcaagtgactgtgtggacaatagttttattttcactggaatgtagtgtcacgtttcgaatttgactctatcatcctattctataacttgaatgcgggagactcgaatgtattcagttagagttttctattgtattgtaatcttaactaaccatcttcctcttgctagatggaaattcgaagtgatctgatggatgcacatctgtatgcttttaagaggtagttgagttgttctatttccctttagttttgtgtgggcaaatgtcccaatgcccaatccagtaatatcttgctgtctgttggtcacaggacaacattacagaatatactggaagagaaagaatcataccgtagcattagacttgaagtcctaccatacttagtgaggagtcagttggtatgttcgtactcaatttcttgttgtttgatggtctcttaactctatttctaagcacttcataattttggtcaaatttgtgtagaaatcatcttcatcaggaggtgagggaacaaccgttgatgaaactggcgatactacagttccatccaatagtcatttgcagtgtctatcacagcatcgcatacttgcaccatctgcttttaagaaagatttgttatcatctggaggaacatataggtgctgtgtctatattgctactaaaagcaagtactgtcatcgtttgaactccattcaggcatactgtgatatcaaccgagatgtaaatttctcatcctgtagtaaatgccaattttttttgttgcaatattgctgttcttacttgaatgctaaccataatttaacaggttgtaggggatgctagtcacttgtccggttattccttctctgcacagaacaacatcatccatccaacttctgtgcttggatcgaagactacagtaagtctgatttcatagctattttagttttagaaccatgaaatggttgctgaaatacataaaaaataaaagttaaatatagaatgcgaacattctttattcaatcaagtcttgtatgtgcaaatttacatgtgttggattgaagatgataatgttctctctgctgacaaaaagtgactagtgttccattttaacatggcctctaaaatgattggatctttgtacatagatactaggactagcaataatattgtatgactttagataagtactagagagggaagcgtaaatctatcagtgctggcacttttcactgttacaactcaagtagaatactaccttcatgcttcataaatactgcatgggatctttgttattttttatttcatttgaactcattcttccaaagtattttccttacaaaaccagattctttaattcaatttttctttgatgagaagttcagtatgtttgtctgatcctggttgctggaatgatgaatcttcttttgtagtgttggcattgaggaccctatgttttaattttttttgttagattaatgaaaaatagcaattctctctattctgttgtgtcaaaacttcttaaatgacgagcttctattttggcctattttccttgtaatatttgattatttatagatcggaccacaatgcatgcttgctgagggttcacaattaggtgacaaatgtagtgtgaagcgatctgttattggccgtcattgtcgaattggttcaaatgtaaaggtaataatactattactttgttgtttcatgccaatttattacaaattcctttgttctacttgatagtatcatttgatagctagtaatcagtatatgctaccttgccactgtttttatatcatagtttcaatgcagtaggtcatttggtggaatactacaactaattacttctgattggagataaaagtttctttgttgatctgaacatttaattattatattcctttgttttagattgtcaattctgtcgtgatgaaccatgtggttattgaagatggttgtcacatacaaggttctgtgatatgcaataatgtgcaacttcaagaacgtgctgttttgaaagattgtcaggtacctatttttttccctctttgtgcaccaattttacttaaacttagaagtgattaaaactttagaggggaaatgttttattcatgtcaagcggtgaaggtacagttgatgatattgcttttcacccttgtatatataaaataaaaatgaataattttatatttagccctgttatagagacgccacattgaaattgtctttataaccttttatatgttgaaatgatttcaggttggtgctggttatattgtaactgctagcagtgaacacaaagcagaatctctcagcaagaaagtagagcgattttgatagtgtggttgaccttgaacaattttgtttgctaagtcagatacagccgtacaaggagttaagaagggagggggtaacatgtatttcgaaaaaatgatttcaccgtgataccccaaaaaatagtgtgctcttgtctattctaacagattgagcttggacttgacagttgaagcgcttctagcgagattgatccatgatattatgagtaaactatgtgtatccgtttgttggccctgttcctgttattgatttgtaattttcttgtcaatttgggtggtacagtaattcatttggtacaccaaggtggttcttgtcgctattttgtaatacattatgttagctttgggcggcttactccctcc</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0338900, RefSeq:Os06g0338900