Os06g0568200

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Revision as of 09:23, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0568200| Description = Vacuolar ATPase B subunit| Version = NM_001064437.1 GI:115468605 GeneID:4341339| Length = 5526 bp| Definition = Ory...")
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Gene Name

Os06g0568200

Description

Vacuolar ATPase B subunit

Version

NM_001064437.1 GI:115468605 GeneID:4341339

Length

5526 bp

Definition

Oryza sativa Japonica Group Os06g0568200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:22840211..22845736

Sequence Coding Region

22840547..22840732,22840815..22840898,22840987..22841040,22841147..22841194,22841352..22841434
,22841786..22841936,22842471..22842608,22842789..22842917,22843214..22843419
,22843557..22843668,22843968..22844027,22844154..22844252,22844343..22844398
,22845053..22845113

Expression

GEO Profiles:Os06g0568200

Genome Context

<gbrowseImage1> name=NC_008399:22840211..22845736 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:22840211..22845736 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggtctggtgaaggatggcgccgccgatttggaggaggggaccctggagatcggcatggagtacaggactgtttctggtgtggcaggacctctggttatcttggataaagtaaagggcccaaagtaccaggaaattgtaaacatccgattgggagatggcaccactcgccgtggccaagttctggaagttgacggtgaaaaggctgttgtgcaggtctttgaaggcacttcaggaatagacaacaaatataccactgtgcagttcacaggagaggtcctgaaaactcctgtctcacttgatatgcttgggcgcatttttaatggatctggaaaacccattgataatggcccacctattttgccagaggcctacttggatatctctggaagttcaattaatcccagtgaaagaacctatccagaagagatgatccaaacagggatatcaaccattgatgtcatgaactccattgctcgaggccaaaagattcccctcttttctgctgctggtcttcctcataatgaaattgctgcccaaatttgtcgtcaggctggccttgtgaaaagcttggagaaaggcaagcatgcagagggtggtgaagatgacaactttgctatcgtgtttgctgctatgggagtgaatatggaaacagcccaattcttcaaacgtgattttgaagagaacgggtcaatggagcgggtcaccctttttctgaatctggcaaatgatcccaccattgaacgtatcatcacccctcgaattgcactgacaactgcagaatatttggcatatgaatgtgggaagcacgtgcttgtcatcttgacagatatgagttcatatgcagatgcgctccgtgaggtatcagcagcccgagaagaagtgccaggtaggcgtgggtatcctggatatatgtatactgatctggcaaccatatatgagcgagctgggcgtattgaaggaagatcaggctccattacccaaattcccattctaacaatgcctaatgatgatattacacatccaactcctgatcttacggggtacattaccgaaggacagatatacattgacaggcagctgcataacagacagatatacccacccatcaatgtcttgccatctctctctcgattgatgaagagtgctattggtgagggtatgacccgtcgagaccattcagatgtgtctaaccagctttatgccaactatgcaattgggaaggatgtccaggccatgaaagccgttgtgggagaggaggcgctctcttctgaggatctgctttatttggaattccttgacaaatttgagaggaaatttgttacacaaggagcatatgatacaagaaacatctttcagtcacttgacctagcatggacattgcttcgcatattccctcgtgagcttctccatcgtatccctgcgaagacattggatcagtactacagcagagatgctacccactga</cdnaseq>

Protein Sequence

<aaseq>MGLVKDGAADLEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQ EIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDM LGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIAR GQKIPLFSAAGLPHNEIAAQICRQAGLVKSLEKGKHAEGGEDDNFAIVFAAMGVNMET AQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILT DMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRSGSITQIPILTM PNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRD HSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVTQGAYDTRN IFQSLDLAWTLLRIFPRELLHRIPAKTLDQYYSRDATH</aaseq>

Gene Sequence

<dnaseqindica>5005..5190#4839..4922#4697..4750#4543..4590#4303..4385#3801..3951#3129..3266#2820..2948#2318..2523#2069..2180#1710..1769#1485..1583#1339..1394#624..684#gttctctcctctcctcttcctccccccacccgcctcgtcgccgatccgatccgcctccgcctccgcctcgcggcccggcctgcctgcctcgccgccggtggtcccgatccgaggtaaagcttcgtctcgtctccctctctcgcgcttccggtgccccgccgccggccaaaatcccgccgcgccgccgcctctcagcctgtttcccggcggattagggcgagtccgatccgtgtgcctgcgtccctgcgttgatctccgtcctcgcgagagcagcctcgccggcgccctgctgcttcccgccgcatcctcgccgttggtgccacccgtgctttcccccatccctcgcgtcgcgcctctctctctctctctctctctgtgccttatcgtgagcttctcttctagatctgggggcttctctctttgccttaaccgaattggtgaggtctgccccctgattcaggggggcgcagggcggagagattggctgagaggctttttcgttgttgtcggtggattaggatgatagagcgatcgatctcgttaggctaataatttgtttgatccgatcaggttgattgatggtgttttacctgcgtgcaggttgctcttgctgggcatcaaacatgggtctggtgaaggatggcgccgccgatttggaggaggggaccctggagatcggcatgggtgagtaacgagatcggatccattgcgttgtgcttttgcgtgatcagtggcctgtgagttttgtgttttgcttccgggcttctggcggcgtactggtgccattgcagctgaacagtgcctgcattggcactggcatgccagattttttgttatgaaaaaaaggagcctggttaaacttttcagaagttcagcaaattgtttgtgagggtccaatcttaatgtttgatcattggatgctgtgatagcttagttacccgctgaatgaagggtggaaatattggtgtacagatacttaaaattgctggttatcctatttataatgctatgctcacagtcaggttttgttcaagtacttaacctaatgtgccaatcatgatcggccctattcattgtcggcgttacattgcagttttaaccgtgcaacactatgtcatgtccttatgtcttaagtttaccatattcttttgtttgcttactatgttgatttgctgtgatttatagcacatctaaaagtgcaaatttcacaaaagcaccattcattgtggtatagacactgttccagctttccagtcttagtcataatgttgtgataacagcaacctttgtcaaacggcctaataaagatgttgcatactttcttttttcaatttgcagagtacaggactgtttctggtgtggcaggacctctggttatcttggataaagtaaaggtacgtgctactgttcctctacaaattttcaacagactaatctggtagcaagttatactgagcatttctttcttcatgtaacttcttcagggcccaaagtaccaggaaattgtaaacatccgattgggagatggcaccactcgccgtggccaagttctggaagttgacggtgaaaaggctgttgtgcaggttatcatttttctatttttatgaatatcttttttgcttgagattgtattcagatttgcatttaccctatgatagttccattatccagagcacttacgttttattactgacttacttgattttcaggtctttgaaggcacttcaggaatagacaacaaatataccactgtgcagttcacaggagaggtaatttcctcttattcatctcttcctccttttatcttcacttcctggtatccatagtgatttaagtgttctaataggttaatcactttgagctgaacagtgttaatttggagaatgatttcacttttggttgtaattgataaaacaaaggagtatcgacaaagcacatgtcattgtgattgtcgagtattgcatgacttgaataatctataagtttttgtagtttatatcttttccttgtttgcatgtagcactgaagtagcggcattgcttaatatgtgtggtaattctttctataggtcctgaaaactcctgtctcacttgatatgcttgggcgcatttttaatggatctggaaaacccattgataatggcccacctattttgccagaggcctacttggatatctctggtaagtttttgctcaattcaggtgcactgctatggaaattcatagttaagtgcatgttcttttatcagtacggatggtggctaaacttatatttctcttctgataatattaataatgtcttccgatgtttattccaggaagttcaattaatcccagtgaaagaacctatccagaagagatgatccaaacagggatatcaaccattgatgtcatgaactccattgctcgaggccaaaagattcccctcttttctgctgctggtcttcctcataatgaaattgctgcccaaatttgtcgtcaggctggccttgtgaaaagcttggagaaaggcaagcatgcagaggtagccaagcatttctctcacataaagataatctgactatttgatgacccagtgagatttgggctcacatatatagcttaataactttagttgtacatggaatcctacataagttcttgatttgaacatcctgttcttttgacaatgattggatgttggcattatagtttttgaatttttatggagaaaaatccatatggtatgctgtagagcaatttacctgttcatttttttccatggagacatttttgcatcgctgaatcactgcttatttgctgattacttttaatctccagggtggtgaagatgacaactttgctatcgtgtttgctgctatgggagtgaatatggaaacagcccaattcttcaaacgtgattttgaagagaacgggtcaatggagcgggtcaccctttttctgaatctggtacatatagcagacttttgaagttctgattcataccaatttgttatgcatggaaactaattctgctagtgtatatgtgcttattttctgtatggttatatatgcatcatttttaacagaagttgacctgattgttaaaggtagaacatattttctaacaccaggctactctgtttacaggcaaatgatcccaccattgaacgtatcatcacccctcgaattgcactgacaactgcagaatatttggcatatgaatgtgggaagcacgtgcttgtcatcttgacagatatgagttcatatgcagatgcgctccgtgaggtattttgctttttatcttttatgatgttgtatactttgtttctttctgttttattacctattcttagaccttaattttaaggaatcatatactaatttgatgtcgttacttaactaaaatgtcatctgtcatccgtttggttgcaaattttcatgtttgaatgaattaaaatcatgaaaaggcacattttcgattacttcgcagcatgcatggcacttgtacaaacatatgtggcatctagactgatcactttatcagaaatgacactagcttggttatgacagtgaaaagttcgtgcattttcatttgatgatgtcaccgttgaccaaaatggctaaatgtggatgttaaagtattcatgtttctatttgcttctaacagtgtgttgtggttttctctatctaaaatggtagtattgcattttccatgttatacatctccttttatgttcgactgcaataaatgataaattgctgaaattttatttattgtgattggcactaatacaacacggtaattgtgcttatatgtaggtatcagcagcccgagaagaagtgccaggtaggcgtgggtatcctggatatatgtatactgatctggcaaccatatatgagcgagctgggcgtattgaaggaagatcaggctccattacccaaattcccattctaacaatgcctaatgatggtaagtgactgtttttgttgatttatttcagttttatatcaccaccacaactatcttgagtattctataaacatgttgcgtataagatttttcctgaagtatgtgaagagtatcatcatatcagatgtattatctgccgcagccttctacttcccattttgtgtattaagattttgtctaccatagaaagtaatgtgcatgaatatatgcactagcccagcatgaacatccatgagttggatgcaagttacttgcgttggatctttaccatttatgttattacctaatgtgtgctttgtttagtcttaaacaataaatatgtttaacattgtgctgtttcatcctaaacagatattacacatccaactcctgatcttacggggtacattaccgaaggacagatatacattgacaggcagctgcataacagacaggtactttcttttctgttcttttattgagtagcaaagattttcttggtaagagtaactggctgcttcatactccacctcaatattatgacacatgaatgtaacttaatagatcttctatattttttactctacctcaatattttcttgttactttcagatatacccacccatcaatgtcttgccatctctctctcgattgatgaaggtgagattactcatcaatataaatttcacataaactggtttcataacagttacatgctacaataatttccatttgcgttctaagaactgtctaataattcttgcagagtgctattggtgagggtatgacccgtcgagaccattcagatgtgtctaaccaggtaaacatttggactccatacatttgatttcatttaagctatggcaaatacttacagtggagctcatttatgctgtttcatgttacagctttatgccaactatgcaattgggaaggatgtccaggccatgaaagccgttgtgggagaggaggcgctctcttctgaggatctggtttgtcactaataactattgaaataatcccatgctgatgtctcttttagaagtaaatttaatattctatctttatctgcagctttatttggaattccttgacaaatttgagaggaaatttgttacacaaggagcatatgatacaagaaacatctttcagtcacttgacctagcatggacattgcttcgcatattccctcgtgagcttctccatcgtatccctgcgaagacattggatcagtactacagcagagatgctacccactgatctatgttcagaaaaatcaaatgttttctctcaagtgcagcttgaataaattgaaatgtttgaacttgtggcctttttgctgtagttatatatagtccggtcctattctttctgtcgggtgagcataattcgttcgtagatcactttgtcacggcaacttctgtaatattgtgccatgtatctttaaactttcacacttgagctctttttggttttcattcgccagaattgttagcaagagcattgtaggccaagatgctcgaacctccaactctccaaggcactggctgtatctacttttgtgaatgaataaagatggaacaataaactgcgatg</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0568200, RefSeq:Os06g0568200