Os06g0614100

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Revision as of 09:26, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0614100| Description = Eukaryotic transcription factor, DNA-binding domain containing protein| Version = NM_001064611.1 GI:115468953 GeneID:...")
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Gene Name

Os06g0614100

Description

Eukaryotic transcription factor, DNA-binding domain containing protein

Version

NM_001064611.1 GI:115468953 GeneID:4341530

Length

7310 bp

Definition

Oryza sativa Japonica Group Os06g0614100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:25438308..25445617

Sequence Coding Region

25438518..25438676,25439080..25439385,25441859..25442130,25442318..25442351,25442592..25442669
,25443028..25443171,25443518..25443628,25443719..25443777,25444248..25444378
,25445230..25445291

Expression

GEO Profiles:Os06g0614100

Genome Context

<gbrowseImage1> name=NC_008399:25438308..25445617 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:25438308..25445617 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcttatccttccacctctggcatgatccaagcttcttcctccctccatggcagcatcacaagaaggaaccctgaaggatatgacatgccatctgatttggatcaagctctcctcctctactttgatggccaggaacaagataagccatctactcaagaagaaccccacaaaccacttaattttgtaaaagagactctcaacatcttcccctcccagccaatggatggagagccaactccaacaccaaaggcttcgatgtcagcgccgcccatcgccggcttttccaggagatcgccggcgccagcggcggcagatggcaggccactcaccctaggcaagacctccaaggcagcattcaagaaagaaggtggcagtggcagcggcggcgccatggcagcgtcagcaagttcagagctcaaggggcccaagacgccggaccccaaaacgctgagaaggctggcgcagaatagagaggccgcaagaaagagcaggctaaggaagaaggcttacattcagcagctagagacaggcaggatcaggctggcgcatcttgaacaggagatacaattcacaagagctcagggtgcattctgcggtgctggaattctaagcccagacgctgcattgttcaacttggagtatgagcggtggcaggaggcacaccaccaagtgatcagccggctccgggccgctgtggaggagcaccgaccggatggcgagctgcagccccatgtcgatgaagccatgtcacactatggggtgctgatggctcacaaggctaggctggttggtgctgaccccctccacctcctctccggcctgtggaagggcgccgtagagcaatgcttcctctggataggcggcttccgcccctcggagcttatcaaggttgtggtccggcatgtggagcccctgacggagcagcagctcgccgccgtctacagcgcgcagcaggcggcgaggcaggaggaggacgcgctcgacggcggcctgcaggcgctgctccggtcgctctccgacgtcgtctcctcctcggacgcgccgtcgtcgtcgcagcagacgccgccggtgatgtaccacccctccgccgccgccgccatggctgcggcgagcttcatggggcagtacggcagctacagcaacctgcagctcgccatggacaagctcgccaacctcgccatcttcctacgacaggcggatgaggagaggatgcggacgctgcacgcgctgcggcggatgctgacggtgaggcaggcggcgcgctgcttcgtcgccgtcgacgactacttcggccgcctccgcgcgctcgccttgttctggaccaccacccggccgcacccggccgccggctag</cdnaseq>

Protein Sequence

<aaseq>MAYPSTSGMIQASSSLHGSITRRNPEGYDMPSDLDQALLLYFDG QEQDKPSTQEEPHKPLNFVKETLNIFPSQPMDGEPTPTPKASMSAPPIAGFSRRSPAP AAADGRPLTLGKTSKAAFKKEGGSGSGGAMAASASSELKGPKTPDPKTLRRLAQNREA ARKSRLRKKAYIQQLETGRIRLAHLEQEIQFTRAQGAFCGAGILSPDAALFNLEYERW QEAHHQVISRLRAAVEEHRPDGELQPHVDEAMSHYGVLMAHKARLVGADPLHLLSGLW KGAVEQCFLWIGGFRPSELIKVVVRHVEPLTEQQLAAVYSAQQAARQEEDALDGGLQA LLRSLSDVVSSSDAPSSSQQTPPVMYHPSAAAAMAAASFMGQYGSYSNLQLAMDKLAN LAIFLRQADEERMRTLHALRRMLTVRQAARCFVAVDDYFGRLRALALFWTTTRPHPAA G</aaseq>

Gene Sequence

<dnaseqindica>6942..7100#6233..6538#3488..3759#3267..3300#2949..3026#2447..2590#1990..2100#1841..1899#1240..1370#327..388#aaccactggttcccgttccatttcttgcacaactactcctctagccaaaagtcatcctttagcttctggtcagaagaacagccgcagggcctgcttggaaggggattaatttgagcaagtcagcaggcaagtttgggagaggaacaaaaagtttgcgggtatcgataaattcatcggttgatcatagaagatcagatgggaaagaagcaggagatggatttggattactaggctgtcagataccatttcaagatgggtgaatcatgtctgaagtgattcagaaggaaggttgaagcactgctgtttagtttaaggaagtatttttcatggcttatccttccacctctggcatgatccaagcttcttcctccctccatggcagcatcacgtaaaaccaacaatttcttccctcaacctttgtcttgattatctatttcatctagtcttgattctctatttcactaaaacaaaggacttgtgtatgtccatatttgtaaaatttaatctatttccctactgacaatactgcttttaatcatgattaccctgaaatggatctctatttcattaaaataatggactttgtgtacgttattgtttgaaaaattaatttatttcccttctgacaatcatgcttgtttcctcaaatggattaattgtgatcaatctacgccctttttcaccttagctacttggagtacttctgtttttgttttctcatgcatatgatgattttctcagactaaggtggcattttatataatgattgagattgcgaagatcgcttaagaagttttacccttcccccacatgtttaattcttctctgtttttagttgtttaggggggattaattgattgactaaaagtttttttcctgcagaaaagaacccatatttccccctcccttttttttttgtttttaagcaatgagtatgtttaacttttgcacccttttccaacatcaatttgttcatttctaattctatggaccacattcagataatcagcttaattgttcctttctaattccatccccccccctcttttttgtaaagcaatgagtatgtttaactttttgcacccttttccaacatcaatttgttcctttctaattccatggaccacattcggacaatataccattaagaaaaatcaagctctaaatcagtcgcagtagagctacgtactaaatgcaaaatagagactaatggtatattgtcataatgtgtaaatgcagaagaaggaaccctgaaggatatgacatgccatctgatttggatcaagctctcctcctctactttgatggccaggaacaagataagccatctactcaagaagaaccccacaaaccacttaattttgtaaaaggtcgatctactgttaagagtattttgtcatagtatattacaaacatggcttgaagaaaatcacaaagaatgtcatgcatacattgatttctgtgatttgacttgctttagcttatagctagatgtgtaagattaggaatggctaccaatcttctcattccctttcttttccttttggtcattatagtcatacatgattttattagctaattggagaagagtgacacgtaacaaacatagctgatatggtcgcaggatcttgctagaagattgcaaccaaaaagaacatattttttgccccacttttttgaagatcttggccacacgcatttgaaaaattagcacagatatatatctgggagacacatcagttgcatgtgtgcatgaaagcatgcaagcacctgcctacaaactatgtaaattactaagtcataatgcataattactgaacttgttcatgtgtgcatgcagagactctcaacatcttcccctcccagccaatggatggagagccaactccaacaccaaaggtatatatgttaatatgtgcacatatgtatctctagctagctatcacaatttaagcgtgttgttcacaaggtgccagttctcctcttaaggcttcgatgtcagcgccgcccatcgccggcttttccaggagatcgccggcgccagcggcggcagatggcaggccactcaccctaggcaagacctccaaggcagcattcaaggttttaacttttttacacacgtacgcctctgtagttgtccggaatttttctcggttagacagttgtatcatttttttaccccatcatatgggtggcgttctagtctttggatagatggcttttgatcaatcttgtgttcccttttagttgtgtatgttgggtgttttggctgtgtgcactttcgtggtacagaggctatgagtatactcagacttttgagttcaataaaccttccattatctaattaaaaaaggatagttgtatcacattggtataactgggtgagttaaataaagtttccattatcttagatgttactataattttgtatccatatggcaactagaaagaaggtggcagtggcagcggcggcgccatggcagcgtcagcaagttcagagctcaaggggcccaagacgccggaccccaaaacgctgagaaggctggcgcagaatagagaggccgcaagaaagagcaggctaaggaagaaggtgattacttactatagttactactattactatataccccattgattaaccagctcaatagcaagctaagctagttaattagtactagtactcttgtactaatatcagtcaacaaatgaacaagtagtcagccctcagaagcctaaataaacaaaaatctttggagctagcaagaaaagcaaagagatggtggaagtagctagtgaagttaacctaccacctaatgggagttgtgtgttagacacatgcatgggctttgcatttgttttttctttgcagaatctgataccttcgcttcatattatcatgtgtaattaatccttaatttgttctctttttatttttgtctgtgtgacaggcttacattcagcagctagagacaggcaggatcaggctggcgcatcttgaacaggagatacaattcacaagagctcaggtgaaaattaataagcagcaaagaactgaatcatctcacagaggacggatttggtttgggaaatattaattactactcgcaatttataaaccaccaatatttgtaggagaatcgaagtttctactactaggcaaataatcaatatctaaaattaagaacaaattatctcgaacgaacaatttgtgtttgtaaaaaaaacaatttataagttatatgatgtgtttctgtatctccctgcagggtgcattctgcggtgctggaattctaagcccaggttaacactttcgaactagcatttaatcataataaagagatttacactgctccatctcacgttaaacttaacacgcctagcaacaatagttatttgcatgtcttggtgcaaagaccataagtatttatatatgtcatatcatctaacaaaaatgcatttatatatacattatgtgagggcgtttcagacgctgcattgttcaacttggagtatgagcggtggcaggaggcacaccaccaagtgatcagccggctccgggccgctgtggaggagcaccgaccggatggcgagctgcagccccatgtcgatgaagccatgtcacactatggggtgctgatggctcacaaggctaggctggttggtgctgaccccctccacctcctctccggcctgtggaagggcgccgtagagcaatgcttcctctggataggcggcttccgcccctcggagcttatcaaggtaggctacttctcttctgtgaatgtttgaattttttatagttttatatcagattcatgctttctttttaaaatagtatgaaagttttgttggatcaatcagacggtccaaatcccttacaaagtaccgtacatgacatcttttacaatggtctatactgataacaccccaccaacaagtaacataccacctcacgtgctaccttgatccatctcaccaacatcgctcatgggccttcctctactgcaaccagttttctcctttgctgtttacgaaaattgatttttcataagtggtacagtactttaagagtatccctgtttttatagtcagctgccataaaactaccgtttccacaagcagtcacagagcaggatttttttaagtccacctgtaaaaataaataatatgtaatgcccgcgaaaatggtttttagtagtgagcttcctcccctctcctgttcatatatttttttaaaagagacattaatttgctaaattatattaggaggcaagcatctttttatgtacaagacgtggcacacccatagaggtgtgccttgaaaaatggaagaattttcttaagcagctgtcccgataaaataaaatgttagctggagatgaatctatacccacgtcttaatgtccaaattcattaaaattccacatacgcttttcaatctacctgtcatgttctagatgaaggtcaaaatttactcaatactttgcctccatatattttcctcgttacaaaagcctgattgaaacttgaaaggggcagcaaaagaatttgccgttaatttgaaatttcacaatttctttgttaattttgcaatttcggtccatacctgtattgtgaagcaaaatttaaaaccttgattctttaaagaagcaagagcaggctaagaaaggtataacgcataaatgagcttgaatactcttagaaaaataattacattcaagtaaatatatttatttgtgctagtttggatattgagagcagtgtactataaatcagtcagcaccttcttctatttttcttttttttttcccatgagttagacacattaggtacctaagttgacaactaatgcaaaaatagcagaaatacagtttaggtacccaaagtttctttttgctgggattacccaaagttttacgggatattataggaaagcacaaatttaagagcacgttatatttacgggattttacccaaaattgtacaaaatccatacgttccaaattaagctaggagccctatatatatgtcttggagcacggaaaactattgttctggaggaggatatatagatgctttgttcgactgattaaatgctacagatagcatatatacgaaatcacgaaataaaattgtgcactggagacatatatatgttccaatcatcaacccaaacaaaacatttttaagattatgtggcactcttgaaatcgacaaaataaaactcccaatggcaatggtaatggcccttgccacctgccgctcagctaccaaagtaattactagtagctactccctctgtcccataatataacaatctagtatcggatggaacatttcatagtacaactaatctagataggaaggtgtctagatttattatactatgaaatgtcacatccagtactaggacgaagagagtagttaggtaggtgatgggcagttaggctttggaattcttcatggattgagaagtagagatgcgtacatgcgcaagcgtcgatcaccagatggccggggttggtggagatcgatatatcgagcaggtagaggtagccgatcgatctagctacgtttgtgtcacattctcgatggagacatcgtctggaaccgttgatagagatgcattttagttaggacccctgaacatgcgtgttgtcgctcgttaatttctttcgtctaataatctaattttgttgttaaaataactgaattaaataacgatgttgcgagtattccatattttaccatgcgaaaagataaaattttcatttgattagatgaacgagaacagataagtagtacagctacatgattttgtttttctttctcttttttaagatataaattgaacttgaacttacacatatctatggaatgacatgtggtagaggaatctataaatattcaaaatatttcctgactttaattttgtcatgattaattagtttgaagatatattttacttttcttcttagcaatttcataaaagagcgtggtgcgcaacaaattaatataactcgataaaaagcccttaacattagtcctataatcaaattcaaaatggatcatacatagcatttggcgcaattcatatgttgaattacatagcatctcgcacaattcatatgttgaattaatttttaggtatagcttattagatacttcctccattttaaaataagcaaaccttgtaaatcttttctgaatcaattactgcatttatgcacaggttgtggtccggcatgtggagcccctgacggagcagcagctcgccgccgtctacagcgcgcagcaggcggcgaggcaggaggaggacgcgctcgacggcggcctgcaggcgctgctccggtcgctctccgacgtcgtctcctcctcggacgcgccgtcgtcgtcgcagcagacgccgccggtgatgtaccacccctccgccgccgccgccatggctgcggcgagcttcatggggcagtacggcagctacagcaacctgcagctcgccatggacaagctcgccaacctcgccatcttcctacgacaggtaaatcaacaatcctttcttctagactttttaagttaatttctctgagcactgaagctgatttgggttgggaaattattctaaaactctcgagggatgtcctctcgttttttttgcatggtctcacgtagttatgaaaaaaattaaaaagataatttgtttacaagaaaattaagaagataaattaatatgtgatatattactccacaaacatacaattttaagttgtatgttcgtagagtgatagcatactacatatcttcttaaaaaaaattaaaatcttttatagttatttaagtgacatgcaaacaataagataacatccattcgagagtttcaaatccaccctcgatttgggttgcaagttttcgcatcggtgacgacgttgtgcgtgtatgtgtaggcggatgaggagaggatgcggacgctgcacgcgctgcggcggatgctgacggtgaggcaggcggcgcgctgcttcgtcgccgtcgacgactacttcggccgcctccgcgcgctcgccttgttctggaccaccacccggccgcacccggccgccggctagaaatcaattgaatcggcttagcttaggttattagccacacacgcacacatgcaaagagtagctaaggctatatagcgacatgtaagagggagacgaggagtagatatatagctagagagagcatatgcaccatcttaacgatcaaaataaggttgtatgtgtattcgatcgggaaaatagttttaaaaatagactcgacgtgttgatctt</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0614100, RefSeq:Os06g0614100