Os06g0618600

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Revision as of 09:27, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0618600| Description = RNA polymerase subunit, RPB5/RPB6-like domain containing protein| Version = NM_001064620.1 GI:115468971 GeneID:434153...")
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Gene Name

Os06g0618600

Description

RNA polymerase subunit, RPB5/RPB6-like domain containing protein

Version

NM_001064620.1 GI:115468971 GeneID:4341539

Length

6008 bp

Definition

Oryza sativa Japonica Group Os06g0618600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:25710890..25716897

Sequence Coding Region

25710892..25710951,25711954..25712017,25712222..25712289,25712643..25712889,25713287..25713430
,25713560..25713666,25713751..25713804,25713876..25713959,25715103..25715266
,25715658..25715802

Expression

GEO Profiles:Os06g0618600

Genome Context

<gbrowseImage1> name=NC_008399:25710890..25716897 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:25710890..25716897 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>tcgattgtattgggtaatggagatcaaaatattgcccctgtaaataccgcagttcaattggaagctcgagtcccattgcagatatgtgtttcacagaaaagtagcaacctactaaatgaagaagtgaactttccactcccaattgagcaaccggatatattttggagggaaaaggacgaagattcagaatggagcaaagcaaatgataatactgatttagaagaaggatatgatagttcaaaggatgaagtttcatctgtttcctcctacaacaaagcaaatccagaaagctccctcaggagctcagtgtcgatgcactccctgtcatcacgtctttccactagtgaaccattgtattctagagaacgccccagtttcccatcttatagtccaattcctcgactatcagtatcagagatttcagatgatcatggtggaggtgtggtgtcacctcaaaggaagctaaatcatttgctgtcagatcatcatccatcaaatggacagatgttttctctagatcctgaccgctcaaatgatgatgctggaccacctctcacaccaaaatatgttgaaccagctggatcagaaggctttatgagaggaagatcgtacaacataagaatagatgaccaagtgttgcttcgcttctcaccaaagaattctgactcaacttattactttggtgatatgattggtggagcactcaccttctttcatggatctggaacacgaagatgcctagaggtatctgttaccttggaaacatcagaaacggttaatcctcgtgtaatacatccttcgagaaggagctcaccctcaataaccaaggtacacagtgagcactatgaagttgttgcggatcttcaccagacaagctttctcttttcagttccaattgatggaccaatgtcattttccacttcaaaagtttctgtgcaatggtctcttcgatttgagttcttcacaactcccgaaggaattgattcatctaggtatgaacatccacttctcgtcgagaaaagagagaagggtgactgggtgcttccaataactgtttatgcacctccattgcgtaggcaagcaattcatggaagaaatgatagatctgtcttagttgggaaccttttcaactcttga</cdnaseq>

Protein Sequence

<aaseq>SIVLGNGDQNIAPVNTAVQLEARVPLQICVSQKSSNLLNEEVNF PLPIEQPDIFWREKDEDSEWSKANDNTDLEEGYDSSKDEVSSVSSYNKANPESSLRSS VSMHSLSSRLSTSEPLYSRERPSFPSYSPIPRLSVSEISDDHGGGVVSPQRKLNHLLS DHHPSNGQMFSLDPDRSNDDAGPPLTPKYVEPAGSEGFMRGRSYNIRIDDQVLLRFSP KNSDSTYYFGDMIGGALTFFHGSGTRRCLEVSVTLETSETVNPRVIHPSRRSSPSITK VHSEHYEVVADLHQTSFLFSVPIDGPMSFSTSKVSVQWSLRFEFFTTPEGIDSSRYEH PLLVEKREKGDWVLPITVYAPPLRRQAIHGRNDRSVLVGNLFNS</aaseq>

Gene Sequence

<dnaseqindica>3..62#1065..1128#1333..1400#1754..2000#2398..2541#2671..2777#2862..2915#2987..3070#4214..4377#4769..4913#gatcgattgtattgggtaatggagatcaaaatattgcccctgtaaataccgcagttcaattggtgagttccatgctcgttttctgtacgtccattccagccttaaaattgttctccttaagctttcattatctctgcttaattgtggaaattttgatctagtgatcaatttgtgtgttctttgccgaagttactatcaactattgaagctgtgacttgtgttgaagaacttgtctgaggacatacttagtagatgtgctagttagacatcaagttggatcctcaatctaagtattctaggtagagaattagcagtaccttgtttggtataaataccattcaaaactactaggatatcatttgtctcttttagtgccttgttctttctcaatctagaatgagattacaattctatgtatttctcgtatcagcctaagcgctgaatacgtgggttgtcatcaaattgtgcctgcagccctcatttgatatgttaaaaatagatgcatgtgctcaatgcttgcattaaatttcttttgagtaggttttggttggtgcgattgtctgtgttggctttgcaggccctaaatgctcgattttagctcagtatcaaacccatatcttggtagtaatgtcattacgttagtatttatgtggactaccaaggatcaatatgatttttgtgttgtctgtgcttaagacatttgtttcagtttcatgcgttcagtcttcattcttgttcttgttaagttttcttatcagacaagtttagaggcttagagcatgataaaatacacacgtttagagttggttcttctagctctttgcaaccacctcttaaagtgttgcgtcagtgtttttttaagctacatttgaggttatcagtgcttgtgtatgattacaatttactattgtattggaaaccacctgatgccacctcttcattttatttttataatcatgaactcaatctgaatttgcctatccgtgtttctggcatttcatataagtgcaattgtgtaaatactctaccttggagtaagactaaaatcaacatggttattgcaggaagctcgagtcccattgcagatatgtgtttcacagaaaagtagcaacctactaaatgaagaaggtcagtggtgtgtatttaccaacttgaggtgctgaaacttcactaactgtttgtgaatgtgtactgactgaaaaatcatgatacaataatatttcatatgttcttatttctaatgatgcttactccactccatttttgtgtgtatgctcattgagcttgctattctgttgggatacatagctgaccatgttgtgcctgtcccagtgaactttccactcccaattgagcaaccggatatattttggagggaaaaggacgaagattcagaatgggtgggtccttatataagctgttttgcacctcccatatttcacaatactaaattatttcttgatccttttcttacacattttcttacatgagttggcaaatattttcgttactttgatgaagtacagcagcattttgcaaagaaatgcatcatagtttgttaagcataaaagatgaaagcattcataaatcttgaactattttccaacagatgatattttgcatctatgcatacaaagtaattctagtaatcctcatctgaaccattgagtctaacgattaacgtgcatcagtatacatgcacttgatttatcgctctttgcacttatgttgacacatcgaattgtttttgcagagcaaagcaaatgataatactgatttagaagaaggatatgatagttcaaaggatgaagtttcatctgtttcctcctacaacaaagcaaatccagaaagctccctcaggagctcagtgtcgatgcactccctgtcatcacgtctttccactagtgaaccattgtattctagagaacgccccagtttcccatcttatagtccaattcctcgactatcagtatcagagatttcagatgatcatggtggaggtaaggtggagtatttatttttttgacgtgaatttttgaattgttcaagaggtacaaatcaacaatattcttaaggaaatattaaatatagtctcaagttttttttccctatgtgattctttatcagtctcttcctagtgattaatctgcccttcagctcttgtcatacttttagtaatgttcgtgattgtaatatttatgtccggtggattttccttttacaaattgatcatatttgtggtgcatctcatagcatttgttttgctattcctaaaaccacagctttgacgtgattttgccatttgcaaatacaaaattctgatagagcatttgtataagatatccttattctagttcatgatggtcgtttaatttaatcgatcaatggcacaagcaggtgtggtgtcacctcaaaggaagctaaatcatttgctgtcagatcatcatccatcaaatggacagatgttttctctagatcctgaccgctcaaatgatgatgctggaccacctctcacaccaaaatatgttgaaccagctggatgtaagccatcctcacatactgtttcagatctggagttactatatctcgctattctctttattataggtttacataacatgtagtcaatattgatttgcagtactaagttgccattacaattttttgcagcagaaggctttatgagaggaagatcgtacaacataagaatagatgaccaagtgttgcttcgcttctcaccaaagaattctgactcaacttattactttggtgatatggtattgtctgatttgattacatgtgtaaccgcattatcaatgttagaaacttataactgattatctcagttcttctaattgcagattggtggagcactcaccttctttcatggatctggaacacgaagatgcctagaggtaaaaggttgagttgagtaaaatgtgtattggagtgggatttcatattgggaatgttttggtacttgcaggtatctgttaccttggaaacatcagaaacggttaatcctcgtgtaatacatccttcgagaaggagctcaccctcaataaccaaggtatattttctgcactagtgttctggaccactttgatattatgtaccaacatctggtcaatggtttatttgtgtagcttgagcaattctttagtccgattaatagtttgtacggaatcagtttgaacttctgttcttacctacataaagtatttactttgattccaatgatgtagttattttcctcaagcctcagccatttatatacaattacaatatactgatgcgatctgacatacacactagtgttcacaacctcataaaaccaatcttatgttggttagctacaaggatgaccatgaatcagataacaataacatctgcacaatttttgttgttagttcatgacactgcttccatcctttttccccgtgtaaacatatggggtaagcatctgttggaaggaggtgggagagctgataagctactctaatgaaggacccctaccttttcttttctttttttctttttaccgtggggaaggagtgtcgggagtacaatcactggccaagggagaccacaatgggactttagggattaggaacttgtttactcatctttgctcgactaaagaaggtgcaatgcccttctgtggtgatgactctacctaggaaatgtagaaatagtctttagaaaacacatggagtacattagtagtaaagcttccaaaagaaaaaataacctaacctttggaaaaacaaactacctgtgcatgaacagcaattgcagcaaacagtaactatggaacaataagcatgatggacaatgccattcgaacagtagggatgtgcttaacacttttatttgtcgaggaaagggcatgtgctaattgccctcaaacacaaaatattagtcatggccatcaagaatctataagcacctctgagtcttagacttttacctgctattgataaatctagtgcattctagtaacatgccaatatcaaatgttgtgtattctgctagcttctttttcaccaaaaagaccaccttttgtctttatgtacttacactgtttgctttcgacgggaagcagggttactttgcttgccttttggtctaaaaaacatttagtcatttacactgtaaaatcagcaaattgattttaatgattcactcatttttctctggactctctgcaaaggtacacagtgagcactatgaagttgttgcggatcttcaccagacaagctttctcttttcagttccaattgatggaccaatgtcattttccacttcaaaagtttctgtgcaatggtctcttcgatttgagttcttcacaactcccgaaggaattgattcatctaggtatgtaacagtattaacaattttatgtgctgtagcctgatagcattatcttggacaccgtgtctcttaacagcgcagggttggattgctaagtaggccacgagttgtttcgtaccttctgtgctgtttccataatttacatcaatagtagaatgattccttcatagaaataggagatatgttttatgctcatcgtccttagatgtgcatagcaatacacaagctataatcaccacagctacaattagtttcttcagaactatgctaattattggtgttaagcaatttgtttcaaccattatctggtactgccatactgggaaagggtgatcttttctagtctgctgctgttagttttgaatcagcaattctggtttctctcttttggcaggtatgaacatccacttctcgtcgagaaaagagagaagggtgactgggtgcttccaataactgtttatgcacctccattgcgtaggcaagcaattcatggaagaaatgatagatctgtcttagttgggaaccttttcaactcttgaaggtatgcagccttcttgcatatgcctgtcttttcacctgtcctgctagggatttacatctcggttatgaaagagaacacaatagagactgagatttctggtttccgtggtagcagaagtctctgatcgataatcacccaaaacactcaaataaactttgaactttttgtgacatgaataatatttttgcgatacatttgatttaaaggttaaaatgtagattccatataatctataaacaaaacctattttagcaaaaagaatccaaatttgaactgaaatcactgagaaatccggttgctggctgagaccttttcagctggccatgccttttctttggacaaaattggcgtttcctgaagctggaaagggaaaactaagtttcttttaaataagaatacagaagtaatttttattgtttcaatgaaggcaaaagtaatctcactataagctgttataggatggagtagtataaatttgataggctgaatttctttcctcttggcacctatctataattcaatcaaactatttattttgcttattcatctatttttgtaccaatattcaaccaactgctatggtagttttatttctttagttgatgaacattggggatctgaatatcttaccctgttgccttcaagctcagatgtgcatacaaggttctgctgttcttttcaaaacccctaccagttttgcttccgatgagcttcgacgagtattctctgtagttcactttgcacagctggccagttccatacctctaaaatacatgggagatccggaacacataaagcgagaacaaacttgtgttagatcaagtgtgcaaatcacagagttcgtcacctgagaacaggcagctgtgccttgatgtaacatcggcactgcttgattaccttgatgtactataggcattcctttgatagagggacaaaacttttggggtgcttgattagctgttataccccttttcattcggtatgtgtatacgtgagacatctgccttgtaattcaattcttttgtggaaaccaaacatatagcagtacgctggttgtccagaatccagattacacacgtcctgtttctgagac</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0618600, RefSeq:Os06g0618600