Os07g0139500

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Revision as of 08:21, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os07g0139500| Description = Myb, DNA-binding domain containing protein| Version = NM_001065395.1 GI:115470522 GeneID:4342365| Length = 7542 bp| ...")
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Gene Name

Os07g0139500

Description

Myb, DNA-binding domain containing protein

Version

NM_001065395.1 GI:115470522 GeneID:4342365

Length

7542 bp

Definition

Oryza sativa Japonica Group Os07g0139500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:2116261..2123802

Sequence Coding Region

2117212..2117326,2117402..2117527,2117654..2117791,2117904..2118323,2118421..2118591
,2118701..2118880,2118988..2119140,2119226..2119384,2119841..2120152
,2120285..2120452,2120851..2121050,2122207..2122569

Expression

GEO Profiles:Os07g0139500

Genome Context

<gbrowseImage1> name=NC_008400:2116261..2123802 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008400:2116261..2123802 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaacacaaaaactgaggcatcaaaggaagggagtggcaatatttttggaaatgaacttgatgaagaatttgatgcggagaagcacaataaagaggcaactaccagaactgggtttcctaaagctgccttgttgttagtggatgctcttaagaagaacagagcatgccagaagttcattagaaggaagatgattaccattgaagcaaaaattgaagaaaataaggatctcagggatcgtgtaaaatgtcttttggattatcaattaagctgcagaaaagcatttggcaaaattttgtgccaaaaggaggatcctcgtgttagattgatctcctctcgaaagccatgtgcacaatcaacgaagaataaagataagaagacacctgcattatttcttggccctgcagataaccctcatgtttcaaagtacaaaatggtactgaagcaactccctatgtctcttcagaagcaaccgtggtcagatgttgagaaagagaaacttgctaaaggaataaagcagcaataccaagaggcattgattttgaactcgatcaataaaggaagttccaccggtgacttcagtgctgtagatatggcatatgcactgacgaatactgctggcaattttgaggttactcccgaaagtcttagatcggtcctgccattaataaactgggacaaaatagctgctatgtacctgcctggtcgatctggtgctgaatgtgaatcgaggtggctaaactttgatgatccattgattagtcataatgcctggactgctcgggaggaaaaaagacttatactaactgttcaacagcaaggaatgaataactggattaacattgcagttacattgggtactcacaggacacctttccagtgccttgttcgttatcagcgaagtcttaatcactgcatattgaataaggactgggctgaagaagaagatcttcaacttcaagctgctgtcaacacctttggaactaattggcaacttgtatcagctagtatggatggtcgcactggcaatcagtgctctaacaggtggagaaaaaccttaaaccctgaaaggtcaagagtggggagatggtctcttgatgaggataaacgcctcatggtagctgtgaagttgtttgggtctggcagctggaataagattgctcagttcattcctggtcgcacacagagtcagtgcaatgaaaggtggcgcaatgttcttgatcctgatatagatcttggggaatggcgacctgaagaagactccatactattggcatcagtcgatgagtttgggccttgctggtccaagattgctggggcgaagattcctcaccgtactgacaatatgtgcttgagaagatggagaaagttgtgtcaagataaattgccttcagttaaggcagctcaacaaataaagaaatccattcttcaatgcaactttgttgacagagaaacagagcgacctgccattggacccagtgacttaatgccacttgttcgctccaaagttgatggaagtgatgagaacactgtgagtgctaaagtcaggaagccccgaaaacgttctagaataccatgtgaggacaatgtactccctggtgacacatcaaattcttcaccttctatgaatctacctctttctgaatctattgatgctgaggctgctgtaaacacaaccacagcaaattcaaagaagaaaccatctagaagtagatcgaaaaagcaaactgatgaaaatcttgctgtctgtgatgtcaacaactcttctaattgttctagtggagccaggaagagaaagagatctattactgacaaaaatcaagttgtgcaaaagaaaatgaaggggtctatctctggtgataatgaggctgtcgtagagacagtgggcactatcagtgctgataatgaggtagccacgaaacggaagactggctctacatctgttggtgaagaaggcacaaccaagaagacaacgaggggctctctctctggtaaaggagaagtcaacaagagaatgaggggctctatctctggtgttcagaagggagcaaccaaacaaagaatgaggggttcagtctctactgataatcatggtgctgtaatgaaaagcaagagagcaccatcaaggaaatcagccgaagagaactcaaaagctgatagcatggctaatgcagcctttgggtcggaccttccaactgtggcttctgaagatagagatgctaataatggaaatgtgaaaaatgggagactcaagtcaatgccgagacccaagcagataaacatgactgagggatctgcagacaaattttccacatccacgcggcttgctgattgcatgtcattcggccgaatcaatggatccagcagggttgcaagacacttatgtgtgagtgtcaagccgttaagcaacatgatccaatcaaatggaccttctgatgtgtcagctaaggatcccacttctgctgaaacagatcccacttctgttgagaatagcaacaccgcttga</cdnaseq>

Protein Sequence

<aaseq>MNTKTEASKEGSGNIFGNELDEEFDAEKHNKEATTRTGFPKAAL LLVDALKKNRACQKFIRRKMITIEAKIEENKDLRDRVKCLLDYQLSCRKAFGKILCQK EDPRVRLISSRKPCAQSTKNKDKKTPALFLGPADNPHVSKYKMVLKQLPMSLQKQPWS DVEKEKLAKGIKQQYQEALILNSINKGSSTGDFSAVDMAYALTNTAGNFEVTPESLRS VLPLINWDKIAAMYLPGRSGAECESRWLNFDDPLISHNAWTAREEKRLILTVQQQGMN NWINIAVTLGTHRTPFQCLVRYQRSLNHCILNKDWAEEEDLQLQAAVNTFGTNWQLVS ASMDGRTGNQCSNRWRKTLNPERSRVGRWSLDEDKRLMVAVKLFGSGSWNKIAQFIPG RTQSQCNERWRNVLDPDIDLGEWRPEEDSILLASVDEFGPCWSKIAGAKIPHRTDNMC LRRWRKLCQDKLPSVKAAQQIKKSILQCNFVDRETERPAIGPSDLMPLVRSKVDGSDE NTVSAKVRKPRKRSRIPCEDNVLPGDTSNSSPSMNLPLSESIDAEAAVNTTTANSKKK PSRSRSKKQTDENLAVCDVNNSSNCSSGARKRKRSITDKNQVVQKKMKGSISGDNEAV VETVGTISADNEVATKRKTGSTSVGEEGTTKKTTRGSLSGKGEVNKRMRGSISGVQKG ATKQRMRGSVSTDNHGAVMKSKRAPSRKSAEENSKADSMANAAFGSDLPTVASEDRDA NNGNVKNGRLKSMPRPKQINMTEGSADKFSTSTRLADCMSFGRINGSSRVARHLCVSV KPLSNMIQSNGPSDVSAKDPTSAETDPTSVENSNTA</aaseq>

Gene Sequence

<dnaseqindica>6477..6591#6276..6401#6012..6149#5480..5899#5212..5382#4923..5102#4663..4815#4419..4577#3651..3962#3351..3518#2753..2952#1234..1596#ttcgatgggggaagccgaggcttcctcctcctcttcctcgcggaagatttcaaatccctcctccacttctccaacgccttcgccaactggaaaccccgaattccccgccgcctccccacccgcgccgcaaacccctaaaccctagccgccacctccacggcggcggccgccgtagccatggatttctactccgacgactccgacccggacatcgacgaggacctgcagagggacctggacgcgctgcgccaatcctgcatcctctccgggaacgaccccgacgcggcggtcgcgcaggtctccgcctgcctcgccgccccgccggcggcggcggcgggagcggaggtgaatggcttgtctgatgacgacgacgaggaggaggacgaggatttggccctcgtccgcagcatacgtgagaatctcctcctcaacaaggcctcgccgtcctcgcccctgccgcgcccgatctgcgcctggccgccctccgactcggaggacgacgaggacgacctcgagacgctccgcgcgatacagcgccggttctcgcactaccactccggtgagttgattcgctctccctttgtttgttcgcggcatatgctctaagataggttccatgtggtgtgctaatcgatttatacattaggacaggaataggatgattttgtatgatacgacctgggaatccgaataactgggataaacttgcaaggtacttgactctttgatcaaaacataaattacccaattcaactcgtcttctataaaatatgctcttgcatcggtatataatgtttttatgggttctctagggtttatacttccttaattgttgtagctgtagaagaaatttaagctatgtaacacacttgctacatatggtgttatcttcatcagaccttacttctaaaacatggaatagaatctgtgcaaactatatttgttccttagagccaccaatataatatatataattgaagaaataatatgatgtaactaagtctctgacgtatagatatatagtaagtaaattacatgtggagaacagccatgtcaagttatttgtgtttgttctttttcagctgtacatatcaatagttcagtacataattgaaaaaaaaacatgtacagtctttgtgtaattcttgatgcagcaaatgagtgtttcattgtactcgaatgagtccttagtattttgatttgcttaatgcaggtacctccagtgggtcagagatgaacacaaaaactgaggcatcaaaggaagggagtggcaatatttttggaaatgaacttgatgaagaatttgatgcggagaagcacaataaagaggcaactaccagaactgggtttcctaaagctgccttgttgttagtggatgctcttaagaagaacagagcatgccagaagttcattagaaggaagatgattaccattgaagcaaaaattgaagaaaataaggatctcagggatcgtgtaaaatgtcttttggattatcaattaagctgcagaaaagcatttggcaaaattttgtgccaaaaggaggatcctcgtgttagattgatctcctctcgaaagccatgtgcacaatcaacgaaggtaattatcattttgtatctacatctatgtatcggatgtttgccaatgacatgcctatggatacatatctgacatggactttctattgcctgagagccaccaagattcgtgattgttgtagccaaatcgattttgtacatttatttgtagttcgcgaaggtagttgtagtttcctgtatgaacaaaagttagttagttttgtatcgcgtgaactaaattagagtgtcttctgacaactaggatcatttgctgtttcctaggtggcgctgggtactatttttttgttctatgacatgttagaattttccctatggttgaaatgtatgacttgttcactgtgatcaatttgtcatggaatttctaggcattgttatagttttattgttaaaaattcgtacaaattttgttccactacttatatggcttgaaacaatgaatttaaggcagatatgtttcccatttacgtgacatcattttatggcatgcttaacatgggagtaatgtagttgtgtagcacaaatttattaagagaaaatagaatggagtaaagttatgtttttaccccacaaaagtttcttgtaactttgacaagctgaaagtgagcatcacttgtttaagttactttactgacaatgtatgctgttcatctgttttgatttctcttaatcatcaattccacttagttttatattaataaaataatatataagtatgcttgttatggtggatcttgtctttggaaagttcactttccagtttcaataaagagttatattggaaactagcactggaaattcaactctaagatcaatagtcctcttagttatgctatgcttgagatctttttactgtcaagaaggtcgtactttatttttgaattgcagcttgagtaagttatttcatggatcaactcagttgatgtgtcattttattttatatacatattctgttgttattctgaccactgagatttaatattgagtacatgttccacaaaccttcatatctgatctctccatcttctggagtttttcttttttatattgcttatgggctcccaatttcttgcagccatgtttgattaagcaaagtatccttttagatttgctattagtagaatgcatatacttacaatgaagcaaatcttttggtgcagaataaagataagaagacacctgcattatttcttggccctgcagataaccctcatgtttcaaagtacaaaatggtactgaagcaactccctatgtctcttcagaagcaaccgtggtcagatgttgagaaagagaaacttgctaaaggaataaagcagcaataccaagaggcattgattttgaactcgatcaataaaggaaggtgatactgagttgtttaacagtttccatcatcgggggcatttctcgtaaattttgggtgatattttatttcgtgaattagtttcttgtaaataagtgttctttatcctttttgatgatattccctagtttttctctttaggtattttttatggttcaaggatgtgaaaatgaaatgaaagatattctatgtcttaatgtactgcttgaatgcctgatcactgtttgttagtgttttctctgatgggggcagttttctgctcctgtctatatctgctattggagtatttgttttccacatgaaatgtaggatcgatgctaatctagtaatctttatgtttttcctgtaattttactgtgctctgccagatgtttaaaataatacttgttatgatgcagttccaccggtgacttcagtgctgtagatatggcatatgcactgacgaatactgctggcaattttgaggttactcccgaaagtcttagatcggtcctgccattaataaactgggacaaaatagctgctatgtacctgcctggtcgatctggtgctgaatgtgaatcgaggtactttcacttttgttatttttaattgcttcaagtatacatcacaagtcccctctcttttatgtgccttgcaacacgtattgacctgtggacaacttgtgattcttaaagaatttcgctttccttgtctaggtggctaaactttgatgatccattgattagtcataatgcctggactgctcgggaggaaaaaagacttatactaactgttcaacagcaaggaatgaataactggattaacattgcagttacattgggtactcacaggacacctttccagtgccttgttcgttatcagcgaagtcttaatcactgcatattgaataaggactgggctgaagaagaagatcttcaacttcaagctgctgtcaacacctttggaactaattggcaacttgtatcagctagtatggatggtcgcactggcaatcagtgctctaacaggtgattttttttttggccttctcttgcaattggctattaccatgtgtgattttgctctttgttattggctactttcggtgttcatatcttacatttttctttatattttaatctgctatctcatgcctttgttttagcaatcatgaatatctggagcttaatatccttcataatcttttgtcttgcattcggtggagaacctctgccatatgaaagaacctaatggttatggttgtggtgaatctgccatcccaccatttgtttatgtagttagatcatttgtgtatgtagcatgtaatagagctctctgtgtttttatgttcagttgcatattatttatgtttttttccgataattattttctggttcagaacataggatatatttatttattatccattgtaagtacatatttttagctagtatttcacatgtctttacgctcaaattttgtaggtggagaaaaaccttaaaccctgaaaggtcaagagtggggagatggtctcttgatgaggataaacgcctcatggtagctgtgaagttgtttgggtctggcagctggaataagattgctcagttcattcctggtcgcacacagagtcagtgcaatgaaaggtaactttgtaattttaacattttagattttactccacagtttagttttggatggtaatcctagttatttgtggttgttaaacaggtggcgcaatgttcttgatcctgatatagatcttggggaatggcgacctgaagaagactccatactattggcatcagtcgatgagtttgggccttgctggtccaagattgctggggcgaagattcctcaccgtactgacaatatgtgcttgaggtaacattatttttaaacttatattcattttattatgacaaattgcatcaatagtttcatcctgaggagaaacatacttgctaatattatgctgttgtcaacttcagaagatggagaaagttgtgtcaagataaattgccttcagttaaggcagctcaacaaataaagaaatccattcttcaatgcaactttgttgacagagaaacagagcgacctgccattggacccagtgacttaatgccacttgttcgctccaaagttgatggaagtgatgagaacactgtgaggtacagcttctattgagtttcaattctcaatctaatagtagagtgtgtagcacaaaaatatgataacttacttttatgttctgtttttttatcaatctcaatttaccagtgctaaagtcaggaagccccgaaaacgttctagaataccatgtgaggacaatgtactccctggtgacacatcaaattcttcaccttctatgaatctacctctttctgaatctattgatgctgaggctgctgtaaacacaaccacagcaaattcaaagaagaaaccatctaggtatgattcataacatttaaactttacatagtttagttgtaatgaatatgcatgttctgtttccttatcactagtttcttgtgtgcttgttttacagaagtagatcgaaaaagcaaactgatgaaaatcttgctgtctgtgatgtcaacaactcttctaattgttctagtggagccaggaagagaaagagatctattactgacaaaaatcaagttgtgcaaaagaaaatgaaggggtctatctctggtgataatgaggctgtcgtagagacagtgggcactatcagtgctgataatgaggtagccacgaaacggaagactggctctacatctgttggtgaagaaggcacaaccaagaagacaacgaggggctctctctctggtaaaggagaagtcaacaagagaatgaggggctctatctctggtgttcagaagggagcaaccaaacaaagaatgaggggttcagtctctactgataatcatggtgctgtaatgaaaagcaagagagcaccatcaaggtaataatcgtgttttggcatgtcttttccagatagagtttacgtgaaaactttagaattatattttcccttgagtttcaattataccagtatcattattttctctcgacaggaaatcagccgaagagaactcaaaagctgatagcatggctaatgcagcctttgggtcggaccttccaactgtggcttctgaagatagagatgctaataatggaaatgtgaaaaatgggagactcaagtcaatgccgaggtattttactcttccctagtccaatttatttttgtgtgggcatgtgaatgttgagttatcgattaaggatggctgttaagggtcaattgagctttgaattaaatttctcgagcttttcatttgcagacccaagcagataaacatgactgagggatctgcagacaaattttccacatccacgcggcttgctgattgcatgtcattcggccgaatcaatggatccagcagggttgcaagacacttatgtgtgaggtagcagaacagccaccttttcttttgtcatactactaaaacctaagtagttgacatttttttgatctgtttcagtgtcaagccgttaagcaacatgatccaatcaaatggaccttctgatgtgtcagctaaggatcccacttctgctgaaacagatcccacttctgttgagaatagcaacaccgcttgaacctctattgactatcaggtctgaaatttggaatgtgttatgctttctgctggtggtaatatgtactgacaagtttccatttctttctgtgcataaagcgatactcggagctttacttctgcggatgtggtattgttgataggtgcaacttcttgaagtgggaggaagatatacatgggaaaaaaatcatattcaaaggtagtaaacatatcaagtaagtcttttcagacaggaagaatgttcttatccagtaattttccatgtccaggaagattcccaatcagctgaagctggcacatatcatggtatagtccaaggacagtgttatgcgatgtctaattacaaatgaacaggggatctcagtagtcccaggatggtcctacaaaggtctcaaattacgtgcatatgtggatgattttatcattggctttaagatgcaagcgtgatggcacttgtctctgtactgaaaaatcgacaccacaaattaatttactagtttttttttagaaaatagaaattttcaaggaatgaattgatttttgttagttcggtggatgcattatcgtgttgcttgctcttctgcaggaatctccataaaacaaaaccagcgccttcttgatgtgatctgttactgaaccggtacactggtagttgtaagtatagtagatgttaactggggtcatcctgtacaactgtactcttattatagactcgaattaagaacaaccactgacatgccatcttccaccgtgagaatagaaaaccattctttaccatattggtacccagttttgtatgccattggggatatcaaaatggtgtactagattgtaacttgttatccggagagttggtaactcgtttccggttggtgtacagtacttgtcctacttggtacctggacgtgagtagttcatctgattctgaaacaatggcattttcattgatttg</dnaseqindica>

External Link(s)

NCBI Gene:Os07g0139500, RefSeq:Os07g0139500