Os07g0237100

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Revision as of 08:28, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os07g0237100| Description = RNA-binding region RNP-1 (RNA recognition motif) domain containing protein| Version = NM_001065785.2 GI:297606943 Gen...")
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Gene Name

Os07g0237100

Description

RNA-binding region RNP-1 (RNA recognition motif) domain containing protein

Version

NM_001065785.2 GI:297606943 GeneID:4342793

Length

7387 bp

Definition

Oryza sativa Japonica Group Os07g0237100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:7659578..7666964

Sequence Coding Region

7664498..7664704,7664790..7664858,7666432..7666620,7666717..7666866

Expression

GEO Profiles:Os07g0237100

Genome Context

<gbrowseImage1> name=NC_008400:7659578..7666964 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008400:7659578..7666964 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcgagtggcctggacatgtccctggacgacctcatcaagcagtccaagaccaagcccaagggcggggccccctcctcgtcggggcccacccgccgcgcggcgccgccggcggcgcgcgcggcgccgtacccaccggccggccctaaggccgccggcggcgcttcgccgtacggggtctactccgagcacgtggccgccatggcgggggtcgtgccgcggccgcggccgccgccagccgccgccgccgccgccgcgcggtctctggagaccgggacgaagctgcacatctccaacctcgaccccggcgtcaccgtcgacgacgtccaggtgctgtttgagctcttctcggagattggtgagctcaaacgctattctgttaactatgataaggatggaaaatcacagggaacggcagaagttgtgtttgcaagaaaagtggatgctttggaggctattaagagatatgatggtgtaatacttgatggtaaccccatgaagatagatctcatcggaaataattctgagacatccccaatgcccccaacagcacctttgttgtacaatccaccttttccgaactaccctaacaggtctgtttcaactgttccttga</cdnaseq>

Protein Sequence

<aaseq>MSSGLDMSLDDLIKQSKTKPKGGAPSSSGPTRRAAPPAARAAPY PPAGPKAAGGASPYGVYSEHVAAMAGVVPRPRPPPAAAAAAARSLETGTKLHISNLDP GVTVDDVQVLFELFSEIGELKRYSVNYDKDGKSQGTAEVVFARKVDALEAIKRYDGVI LDGNPMKIDLIGNNSETSPMPPTAPLLYNPPFPNYPNRSVSTVP</aaseq>

Gene Sequence

<dnaseqindica>2261..2467#2107..2175#345..533#99..248#gcatcctcagctctcacctcactctctcagcccaccgccgccgccgccgccgccgtcaccgacgtagcgctggttccccttccccgcagccggcgaccatgtcgagtggcctggacatgtccctggacgacctcatcaagcagtccaagaccaagcccaagggcggggccccctcctcgtcggggcccacccgccgcgcggcgccgccggcggcgcgcgcggcgccgtacccaccggccggccctaaggtacgccgcgcgcgccctcccactcacctgtggcctcctcgggctctcctcccctcctccgcaagaaaaccctaactccgccggctgcttgtccaggccgccggcggcgcttcgccgtacggggtctactccgagcacgtggccgccatggcgggggtcgtgccgcggccgcggccgccgccagccgccgccgccgccgccgcgcggtctctggagaccgggacgaagctgcacatctccaacctcgaccccggcgtcaccgtcgacgacgtccaggtgctgtttgttcttgtcctcgctgctggtttcgccatttttttgccgtacttcgcttgtccattttcaaatccctggagctgaatcccagaattgccaaggaaatttgtccactcccactagcgcgcatctatgttttcctttcttgtgatgaaaaattaccatgtgaaatgttgcaattaccttacccacctgaattctcaacctcatgaatggggggatgagtttagtgttgctcatgtttctctactagcacctcctgttgttttgcttgttgggccgcgaacattgacaagggtataatacatatctcaaacaaaccgtaagacgccacacacatgcatccttattggcacctagctgctttaaggtcaccacttgaggatatgaagatgtaggtaatcaagattggctcatttcttgattggatggtcagtttatggggaaggaaggataacattacggggactggaaattcgcatggcaggttgtcactctcggtggtagggagtggtgagatgtgacctctgaggggaggcggtgctaggtctatgagcaatggcggtatctgtgattaactggttctcatttaagattggtaatagatatgctgaggtattaaatagcgccgggtgtgcgtgtttatatgtgtaatagggcaggtatgacatattgggaatggaaagtaatcttttggtggtttacatgtgttgtaggatgaatgacatgtaactgaaatcgatgtctcagtgccattagaacccaattttccatgatttgtattatactagttgttggtaaaacatgattccagttatttctttgcataatatactccctctattgcataataactgacaatgggcactattcactttaaaactttgaccactcgtctttttcgttgaatatctacaaatactagaaatgatgccatgctataaagtgatgtatgccctaaatataagtataaaacttttgttcatttgatctaacaattcaagggcaattaatggtcaaagtttaaatgggaagtcaaaattgtcagttattaagaaatgggtggagtagtttgcaatctccaaattctaagtgttcaagtaagtaaaagtgcagagaccgttcttgataacatggaaatcaggttaataaactcatcttcacatacactttgaagaagcacagtgttgtctttccttgctatgtgattaactgatacattgatattgtacccttttgtgaaagatttaaattctcatcccaaggcaagcatatgatgatgatacttttttctgtactctgaccaatgacattttaaaggcatagattcgttgcacagagagattcgtcataaatatatttccagtgtttattcttaagttttactaagctatcatgaattcatcatattgttataaaaactacttggttaagcatgtcatggagattgtgttaaaagcaccaacactttgtgattgaagggaataatatgaaacttttagtttttgtttaagaatataagcacagaatctcaattattctgtgattgtagctgatgggctatattattttctttcctcaggagctcttctcggagattggtgagctcaaacgctattctgttaactatgataaggatggaaaatcacaggtagaccatggagtattgtcttgcctttttctgtatattgctcagatctactctctgttctcatttttctgacattttttcttagggaacggcagaagttgtgtttgcaagaaaagtggatgctttggaggctattaagagatatgatggtgtaatacttgatggtaaccccatgaagatagatctcatcggaaataattctgagacatccccaatgcccccaacagcacctttgttgtacaatccaccttttccgaactaccctaacaggtctgtttcaactgttccttgaattcatatattggttttaaaatcaataaaaatactattagtgtggagcatccttttctcgtttttcactcatttagagacattattttgctagcaattaactgccactaagaatattataacaaacagacttgaggtgttctctaatttcatggaggatttcgtcaatttgatatctccttaggttttgatacatcaaactgtaattgcgtactgaacccaattggcaaaaatgaggcgcataatccttcagggaaatagttttcaagtctcacgaattgatttttcgaaatgccacttaagtagctcacaaatcacatttcagactagttttctctgtactattatactcaatgaatttgtgccccttcaagttcagaagctgtttgggctgtgctgatactgctgcaatctagccttgcacagagtgatgttatccacacaatttatttactgcttaatttctttcatgtttgtgcacatgatactgttctgcacggttcagttggatgcttctatttacagtaaaatgtgaaaaattgagaatgttgtgaaatatcttagatttgttgggcagatggagagagagtaaatcaacacaggagagagttctgttatgtttgaaggtcaatgaataaaaactttggatgataaactggagagcttttagagctaactagtaattaaactactatgtagtctatgttgttaaacatgttgctttaaggtttgtgctcgacagttgaaactattgtccatgttaccatcatatcatacctaatgcttgaattagtgggttttgttgcctgttcaggagttatgtgcaactgaaagataaatttagatgttcaatagctacagtgtgctatgcttgtgtaacatagtattgtcgaagcagtataggacatgatgagttctctggttgcaataggctttgttgttgtagactaatagtcaccatgtctggcaccagcacttgccttgttagggcgttcacggtgtgtcgacatgtcgttcgccctcacccttccacgtgggagattcgtctccattcttgctcctatcgtgaccaaaccaagaccgtgcagccaaaatgagccacggattcttcgcacggatcgaggggctgtggcgtgaggatagatcgggcgcgaatgcatagctcgtagcctggcctcgcgcggcttcgcgcgcgctcaccctaaatcgccggcggacagggggagatgagggctggagaagtgaggagaaagccttgtcacccactgccagagaagaaaggatggaaagttggcacggagcatgctggccggcggcgagccggtgcagaacctcatcgctgcggccagatccacgctgccgccgagattagccagatcagccgctcctcagggtcctccgccgcaccgccggccatcagtccgcctcggagtcctccgccgctgaggcccaccgctagatccgcactgttccactccatgctgccacggttagccagatctgcgccgtcagccccatcgccgcccgccatagaaagaagaggatggaaggtggagctcgacggagtggcgttggtggccgctttgacccgtctgcagcagcagctcgacagcagccgcttcaacgtgtctgcggcttccttgccgcaccgccggagctgccctcagccttgtcgctgtttcgatctactctacggccgcacggatagaggcggtgccagggagagggtgtaggcggcagcacctaggagagaggggagaaacggcgccaccgggaagcggataggggatcgggggtggagggaattaggtggggaggggagagattttatattactttcttgattttgggtgttagagtgcaaatttcggagtactatgtaaattgaaaactaaaagagtgcaaaatgtctgtaggtcccaccatagatttttctaaaccacaccttgcactgtgggtgtagtgtcctttgaagttcttaagcctacatggcagctgaggcctagcaaattgtttggacgcatttgctattgcccttagaaaaccttgttgaacaccaaagatgggcatgtttcaattatgtcactggagtcacctacactgagagatgcagtacgatttcctaaaccatattcttttctctaaaaaaggatcaacactgtaggtccggacgtctacgatatcggaattattagagcagaagcatgcggtatcaattggaaatcaataattcatgttggaaacaccgaccataacaccgtatgttcatgcgcttgaccacaactaggtaaaataaactttcataggcactatactaatgatttattcaacaccaatggcatattcatagtgaactgaagttaccattttgctgagctgcaaagctacgtgtactgttagatgttacgtagttatatcgattttatttgcttgtgaaacaactgacatagactatgatatttaagaaaactattgagcttaggcattgacccgaacaaggactcaggttaccaaatcggaccgcatgtaaatgtggtgtccatacagcgctattaatgttcttacaatttatgcttcacaatggaaaatgagtgttggtttgcatgttagtcggggattggaggtacttgattcgattctcaggctccccacactagcacaattttttgaattgctcatgcaggaagtattgggccaggcctcagagtggtaaccacatggaaaacatgggctgtgaggctgtgacggcgtggctatggcacatgaatgcatggccactgggatacattaggcctaggctgttggggtagcagaattctgaaattacagacggatgaatatagtaaaccaaggaaacggtcagcataaaagtggaatcgtttccgctgctgtttctggcttgttctaccatttccatttatgcttcgggcaattactgtttccagttgatttggtcaatagaaatcagaaatgagcatcgggcggtcccgaatttccatgactattttcaccctagttccatgtatgagaaggtgccagggacagtaagcaatgttcaataaggtgcttgttgggcagcatggttctgcctaggaactaggggcacccatgtggtgccctgggactagctagcccacactgttttgggagtagcacagcgatggagaagaggttagatcaaatggtaatacctgcagggttggatagcttcgtgatggcatagaggatggagaatgtgccagggaggttgcattgcactggcatggaagatggatttggtcggatatgagacagacccgccaggaggaaggtgacttgggccagcaacatgatggatttagtggaggagttggttcggctgatgacaagatggatttgatgatgtgcttgtggtgttatatatatttggctgtagacgtgccatcagatgcagtcaacttcgccatttagtgaggttgtgtgtccttgtcctgctatgtggtctgtaggttcaaccataaatttgtcagcgtttgtccactcttccttgatagtttttatgacttcctaattcctataagttccttgtcagctggggtattacaaaccaaaacatgcatctcgccatccatgatgtaccatagtttttattacttcctataagttacagggtaagattgctgcgacagctttcattcattccttgtgcacaacattgaaaaacaaaacaacgtataccacttttgtctgtttctgttttcacaatgtggaatcctgtgggcaagatctaacagatccgactcaggaatcctgtgggcaaccactaaatgtctaattctaagaaatatttaatgaaaatttggcgtccatactgctttataagatataatccaaacacctgttgtctcatctacaatggaaggacggccaagaaaggaaaatattgtaattgcacttgatgcatcaatggacttacattatggaatgactacatccaagtgcacctttgtgtgtaatagagatagtagtccaagtgtacctgttgtccatggtttgattttgaagggagcagatcacactgctgcagcatttttgctcttttttgcactgttctagattgtccagtccttattagacaacatttcaggatatacaaactgcatcatgtactcccactattttaatagctagtttctgagagtctaatgaggtggcttttcattaagagtaggacatcgtttgcagacacatacatctacagaatttatattcacatgcacagccaatattgttatgggacactcttttgtttgtgggagatgatgaccacattctgtaacctctccttcaaactggtaattcctctgtcaggaagcatttcaaatagcgaatatatccaaatcttaggttcatcatgtccttctaaggaactatcttctattactaaatactcgtagcattttggttactttgcctgtagtgtaccacggagaggtggccaaagaggacaatttcatcaaggtaatggtcgccctggaaacagtcagggcattggaggtgggccaagaggatttcaaggtagcggtcgtcctggaagcggtagtcagggcggtggtggctgcagccaggggaaaacccgtggaaatgaacggagtcgcatacaaaaatcagctgcagatcttgatgctgaattggaccagtatcacgcagaagcagtgaaggagaaatgaggttctcttctatttttactagtgggaatgtgggatgacactgaaactacctggcattgatttaaagatgtgaaattatcttgctagtgttttcatgttttgtgctagaatttttgttgttagtgacaaccattcaggataacatgcttaatcatgtgtttggactttgtaatgtgcagttaaagttattttctgtttgatcaaatgcttgg</dnaseqindica>

External Link(s)

NCBI Gene:Os07g0237100, RefSeq:Os07g0237100