Os07g0412100

From RiceWiki
Revision as of 08:32, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os07g0412100| Description = Similar to Granule-bound starch synthase Ib, chloroplast precursor (EC 2.4.1.21) (Fragment)| Version = NM_001065985.1...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os07g0412100

Description

Similar to Granule-bound starch synthase Ib, chloroplast precursor (EC 2.4.1.21) (Fragment)

Version

NM_001065985.1 GI:115471702 GeneID:4343010

Length

7697 bp

Definition

Oryza sativa Japonica Group Os07g0412100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:13576645..13584341

Sequence Coding Region

13577336..13577452,13577844..13577972,13578059..13578145,13578394..13578585,13578667..13578843
,13578911..13579157,13579247..13579356,13579488..13579588,13579674..13579737
,13580170..13580259,13580358..13580456,13580554..13580634,13580952..13581284

Expression

GEO Profiles:Os07g0412100

Genome Context

<gbrowseImage1> name=NC_008400:13576645..13584341 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008400:13576645..13584341 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggctagaacaatgggttcaacacctacctactgctcttaccaaacaaatggtgttggcgctttaaagcaatcacctcatatgcaattccaacaatcgtacaactatggagttaggttcctaaagagggataccctttctgtgcggattaacaaacatatggccaaaagaatagcaacaagcactggaatttgcactaagcctaggaggtctcacatgcctatagtatgctctgctggaatgacaataatttttattgcaactgaatgtcacccatggtgcaaaactggaggcctcggtgatgttctagggggactgccccctgctcttgctgcaatgggacatcgtgtcatgacaatagttcctcgttatgatcaatacaaagatgcatgggatacaaatgtccttgtcgaggtcaatattggtgacaggacagaaacagtgcgcttcttccactgctataaaaggggagttgaccgtgtttttgttgatcatcctatgtttcttgagaaggtatggggcaagactggaccaaaattatacggtcctaccactggagatgactaccgggacaaccagttgcggttctgccttttatgcctcgctgctttggaggctccaagggttctcaatctcaacaattctgaatatttctcgggaccatatggtgaaaatgttgtcttcgttgcaaatgactggcacactggagtcctgccatgctatctcaagagcatctatcaggcaaaaggaatgtatgtgaatgctaaggttgctttctgcattcacaatattgcctaccagggtagatttgccagagaagactttgaacttcttaatctaccggacagtttcctgccttcatttgattttattgatgggcattttaaacctgtagtaggtagaaagattaactggatgaaggcagggatcactgaatgtgatctggttatgacggttagtccacattatgtcaaagaactcgcttctggcccagataaaggtgttgaattggatggcatccttcgcacaaagccccttgaaactggaattgtcaatggcatggatgtttatgaatggaatccagcaacagatcagtacatcagcgtgaaatacgatgcaacaacggtaactgaagcaagggcactcaataaggaaatgctacaagctgaagttgggttgcctgtggactcgagcattcctttaatagtttttgttggtcgtcttgaagagcagaaagggtcagacatactaattgcagccattccagagttcgtggaggggaatgtccagataattgttcttggtacagggaagaagaaaatggaggaggaactgatactgctcgaagttaaatatccaaacaacgctagagggatagcaaaatttaatgttcctttagcgcatatgatgtttgctggggctgattttataattgttcctagtaggtttgagccatgtggtctcatccaattgcaagggatgagatatggagtggttcccatctgctcatctactggaggacttgtcgacacggttaaggagggcgtgaccggattccacatgggtttgttcaatgtcgagtgcgaaactgttgatccagtggacgtcacagcggttgcttcaactgtcaaacgggctctgaagcagtacaacacaccggcattccaagaaatggttcagaactgcatggctcaagacctatcttggaagggacctgcaaagaagtgggaggaggttcttcttgggttgggcgttgaggggagccagccaggcatcgagggtgaggagctggcgccacttgccaaggaaaacgtggccactccctga</cdnaseq>

Protein Sequence

<aaseq>MARTMGSTPTYCSYQTNGVGALKQSPHMQFQQSYNYGVRFLKRD TLSVRINKHMAKRIATSTGICTKPRRSHMPIVCSAGMTIIFIATECHPWCKTGGLGDV LGGLPPALAAMGHRVMTIVPRYDQYKDAWDTNVLVEVNIGDRTETVRFFHCYKRGVDR VFVDHPMFLEKVWGKTGPKLYGPTTGDDYRDNQLRFCLLCLAALEAPRVLNLNNSEYF SGPYGENVVFVANDWHTGVLPCYLKSIYQAKGMYVNAKVAFCIHNIAYQGRFAREDFE LLNLPDSFLPSFDFIDGHFKPVVGRKINWMKAGITECDLVMTVSPHYVKELASGPDKG VELDGILRTKPLETGIVNGMDVYEWNPATDQYISVKYDATTVTEARALNKEMLQAEVG LPVDSSIPLIVFVGRLEEQKGSDILIAAIPEFVEGNVQIIVLGTGKKKMEEELILLEV KYPNNARGIAKFNVPLAHMMFAGADFIIVPSRFEPCGLIQLQGMRYGVVPICSSTGGL VDTVKEGVTGFHMGLFNVECETVDPVDVTAVASTVKRALKQYNTPAFQEMVQNCMAQD LSWKGPAKKWEEVLLGLGVEGSQPGIEGEELAPLAKENVATP</aaseq>

Gene Sequence

<dnaseqindica>6890..7006#6370..6498#6197..6283#5757..5948#5499..5675#5185..5431#4986..5095#4754..4854#4605..4668#4083..4172#3886..3984#3708..3788#3058..3390#tcctccacttccgcagcgggtgggtagcttgccgcagaactcgttcggctttcgcatataccgccgccgccgcctacctagtacaaggtaaggcgactgccgttttcttcatcttttccctttgcttcagaatgagatgtaccctgcgcggctgcacccagtccgatcttgtacaagattttcaatgtgatgggggggggacggaaatgtggggtttgttcggtgaaaaaaaggggattagtaggggaaggagtttaacgattcaagaatttaatgttttcttgcagatttgcactctcagagtatgttctgttaagtggaattttgttacttctttccatgctatatatattgttaataggatctgctacttcaccctttgttttcttgtaactggccttacaacgtaggaagtgaagttccccatatcctcgttgcattctccaccagtactttacttatgtagtactagtactgtatgttgcttgttatcactcttgtaaatggatagttttcacttgcatgtcccaacttatatttttatttttctaatggaaggactaaggatgtctttctgttcattgggtacatttattaacttcaaaattatgagcactttgctatgaccggttgccgataattttatgttagtttttgggagacattactagaaatagaagaagaaggtattaggcccttttagaatctggttttttttaatcagttccatgtgaactgaacgacttcgtataaatcacggggaaaattcttgcattctaaacagggccttattaggaggtccacaaaaccttgagactgacgttgaaagtgggctgctactaagtgaccgagttgtgagttctgacaagtgaataattggcttccacccctgctcattttgcaccaaaattgattgcacaccagtcatcatcctcggtataagaaattagaaccttaaaaaaaaatctatactcctttaaaatggagtagtggtggtagtgagtgatgattttttttttatatttttagagaaaggccaaaggcctggcttctattaaaagcccggggggggggggggggtctgggagatcccagataagcgtttgcagcacagagaggactttgcctcaacaaaagtaaaggaaggactgactggactactaaagcagaactcaacttgacagcttcaggtttagtatataaacagacactaacgagaaacagaagcagccacaaaacggagacatcagccaattccagttcttctattcccaaatcttgtgttcaccattcttagcttttctatcagcacctccagacttgctagctcatcagcgcgtcctaaagccttccactgcataagataagaaacaatttgaaaggagagatgcagaggtgagtaaacaatctttgacctgaaaatcatattattcctagtgttccaaagaacccagcaaatggaggcgagtagagccgtcataactctgagcctcacttttgaaacctggccaacaaacctaaaaaagtcatcaaaacctccaggacaagcatcccaacccagtgcgtccctctacagatgcaccaaacgaaagtggccatagggcagtcaaaaatgatatggtcagtcgtttccttgttgccacagagcaggcaattttcagacccaaccgaccctttaagtttcaattgctcacaagattggattttgtctctcagggctagccaaatgaaatgtttcaacttcatagggcaaggacaacgccagacaaactgtaatctctcatctaaagcacctctgaacaaaatagctctgtacaaggattttgtggtatacttcttattagaatttagacaccatctcaaggtatcaggggaagaggacaagaccaggttctcaatgatcagcttaatttgacgccattgttccaattctatgggacccatagatccaagtgtttcaggtctgcaatcaaaatctcttgttgattgcagatcataaatagctcagtaaaaatgatcttcagagggcagtcgccctgccaaatatccagccaaaagaagatgtgagtgccattccccacctgccattctgagcccaagttaaaccactttcttgtattgagaattcctgaccaaaattgagaaactctctttgaggagcactgaaagacaccaccaaagatcaagtattttctcctcagtaattccacacataaactctcatcagaggattcaatcttaaaaatccatttggctagtagagcagcattcaaagtcctagtctcagtaaggcccagacccccaaactctttaggaaaagcaaggtcagaccacttaaccatgtggtatttccttccttgcttattccctgcccaatagtatctgcctctaatggagtcaaagttctgatgtaaaccctcataaagttggtaaaagtccatcgcataggatgagtgatgaatttgccatcaccaactcccaaaattctgatatgtgaccatgtgggatcaccatctatccactttctggtacaacagtagaagtcacggactcacggttagaccttggagctctcaatcatgttcatccttgcacaccaataataactagatccttttttacgggagtgaacctccaattaattctaaaagtaagctccaaaaatcaaaatatatttccgctttgcaatgtgctgattcgattttttaattccataacaatgtgcaacattttggtagtatagtaaatatctagaaaccatttgtaagctctaaaaataaaatatatttcctctttgcaatgtgctgattcgattttttaattccatagcaatgtgcaacattttggtagtatagtaaatatctaggaaccatttttgttttgtcctaaattttcaaagttttggtagtataataatgttgcctttcattcagcacatcttggattagatgagcacactgtggattagatcattacattattaagtttttccaaacgagaattatttctagagcagaacttctaaccaccatttggcatttttgtaggtgtcactgaatggctagaacaatgggttcaacacctacctactgctcttaccaaacaaatggtgttggcgctttaaagcaatcacctcatatgcaattccaacaatcgtacaactatggagttaggttcctaaagagggataccctttctgtgcggattaacaaacatatggccaaaagaatagcaacaagcactggaatttgcactaagcctaggaggtctcacatgcctatagtatgctctgctggaatgacaataatttttattgcaactgaatgtcacccatggtgcaaaactggaggcctcggtgatgttctagggggactgccccctgctcttgctgtaaatattctttgtcacgtattgttaaatccaacagtcagatcaaacctcagtgtttctagcaaaaaaatatattcacaaacacaggggtttgatctgattctgcaaacaatttatgctcctgttcgattgcacattcttatgcaactaggtttcattgagataactggttgaagttgagttaacaagatacaagttttgtacatcatgctaatatttaatgcaggatttatcattcatatgttttttcctacattgcattgcacttgccctttatgtacagttcatcttgtgtgaagaaactcattttatcataggcaatgggacatcgtgtcatgacaatagttcctcgttatgatcaatacaaagatgcatgggatacaaatgtccttgtcgaggtaaagtttttaaccatgctgtacgtatttagctggatttaacttataccagttttctgatgttgtagatgctaatttttcctttttacttctgtaggtcaatattggtgacaggacagaaacagtgcgcttcttccactgctataaaaggggagttgaccgtgtttttgttgatcatcctatgtttcttgagaaggtctgataaaccattaattacctgcgttctaattgagtgatgcaaagttctaaaagttttggtatctcagtacaccctttgaatcataaaactttcaggtatggggcaagactggaccaaaattatacggtcctaccactggagatgactaccgggacaaccagttgcggttctgccttttatgcctcgtaagtaaatgcatagatgtgtcgcaacagcctcagccttgatgtacaaagccatgaagtggctacactaagtagttctacaaattgtattgttttgttctatacagagacattcattagttgagatatgtatttatacactaagagaacagaatctgtaaattccatctgataatgtcatataaacgtccccagtcaaaaaaaaaatgtcatataaacgtcaggtttcagtaatttgatacgagcttttaaagtggtccctttttctatctatttatcttttttttttaatttgcatgtgggctcagctaatcacagttgtaggtttgggcaaatctaccattgactgtcagaaattgcatggaattagttttttttcttctaatttgtattatttttgtgcaatttcttctaatctgattgtccttttaggctgctttggaggctccaagggttctcaatctcaacaattctgaatatttctcgggaccatatggttggtttctgtatagtataaactatcacagataattgtctttctccctcattctatctgactgacattcatatttgttaatcaggtgaaaatgttgtcttcgttgcaaatgactggcacactggagtcctgccatgctatctcaagagcatctatcaggcaaaaggaatgtatgtgaatgctaaggtacatcatttcgctatctcttgcaccttatgcacttttagactaataatctccacgtgatccaaattggtggtatgtaggcaaaaatattttctgtaccatgttttaattggtttattgtggtctgctaggttgctttctgcattcacaatattgcctaccagggtagatttgccagagaagactttgaacttcttaatctaccggacagtttcctgccttcatttgattttattgatgggtattggccctaagtttcaattatttctataaagattaagtatgtccttctagtttctttaacattggaatgtattatgatgtgtgcaggcattttaaacctgtagtaggtagaaagattaactggatgaaggcagggatcactgaatgtgatctggttatgacggttagtccacattatgtcaaagaactcgcttctggcccagataaaggtgttgaattggatggcatccttcgcacaaagccccttgaaactggaattgtcaatggcatggatgtttatgaatggaatccagcaacagatcagtacatcagcgtgaaatacgatgcaacaacggtaagactgagatttctcattttaagcatatatggagatttcagtacttacaaatgtaatttatcaggtaactgaagcaagggcactcaataaggaaatgctacaagctgaagttgggttgcctgtggactcgagcattcctttaatagtttttgttggtcgtcttgaagagcagaaagggtcagacatactaattgcagccattccagagttcgtggaggggaatgtccagataattgttcttgtatgttatattttggacaaaagtcattcaatattacataatatgagctaattgtaagtaagaattaatcttgctcttcagggtacagggaagaagaaaatggaggaggaactgatactgctcgaagttaaatatccaaacaacgctagagggatagcaaaatttaatgttcctttagcgcatatgatgtttgctggggctgattttataattgttcctagtaggtttgagccatgtggtctcatccaattgcaagggatgagatatggagtggtaagtattctcactttaggtctgattacacaattgtgaagttaatgagacagtccttgatactatattactagtcaatttttatatccttgcttgcagtatgaactatgaagttattatgaatcacagcaatacaacataattgaatttttgtattcatcataatgtggtgaaaagttcaaagtaaaactacactgtgggtaataccaccaaaaagaaaatcaaattcacaatgttgcaaactacaggttcccatctgctcatctactggaggacttgtcgacacggttaaggagggcgtgaccggattccacatgggtttgttcaatgtcgaggtaaggagcagtgtgtttccactttttgattgccctcaagatcaggaaagagttcgtcatgctagccttgtcatgtcatcctgtagtgcgaaactgttgatccagtggacgtcacagcggttgcttcaactgtcaaacgggctctgaagcagtacaacacaccggcattccaagaaatggttcagaactgcatggctcaagacctatcttggaaggtgagtaattttttttaaaagaatattaatgacaatacgtttttacacttctggacactagtacaccaaatgctgcaaaattttatctcgcttaggcttaagatgaacgcaatcattctacctgattattgctgcgaattatctgcgtcatgcttctacaaatacgttttctcataaaattttcttcaactacatttgttagatcacttattttaagttatttgttcaatttataatatataattttaagttatttgttcaatttgtaatatatactatttaatctatctctatgatcaagttgatcagctatcacctttcatctgccgatcatctaaaaggaaagctagctacctgaagggatgaattaaagcctctcttattgatgcagggacctgcaaagaagtgggaggaggttcttcttgggttgggcgttgaggggagccagccaggcatcgagggtgaggagctggcgccacttgccaaggaaaacgtggccactccctgaaattctccatgacggtgcctagcttgctggcttgtttaggtgacaggcagcctgataggatcccatggacttctgagctcgccaccggcaaagccactatttgtatccctgcaggcttctgccatttctctcgtctacttcacgtgtaatataatcgcagatgttacttagagatgatgggccagatggcatgcatttgcctgtttctctctcgctccttctgcatgtgtaatagtatatttggctgtgaagttctggaccctgtcagtcgctgtcctcgtactgcatttcttgtaaggaactactccctccgtcccagaataaaccgtcccagaataaagtaacttagcatgggatgagatccatcatagaatataggatagtatatcttgacatagtatgtttttttttaatctatgccagctttgctggttttatattaagaaggggagaaactgtacaaaagcaccgagaaagcagcaggaagaagagaacaacattaggaaggctgcaggagaaaagaagggaatggaaaatgaaaacagagtacagggagcaggcagagaaggactatgggctgctcatggcgctattctcgctaggttttttttgccccacatgctatccatacattgatttcatcaagaattttggtcaactgtggaattgcaagctccttgttctgttcctc</dnaseqindica>

External Link(s)

NCBI Gene:Os07g0412100, RefSeq:Os07g0412100