Os07g0414200

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Revision as of 08:32, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os07g0414200| Description = SAM (and some other nucleotide) binding motif domain containing protein| Version = NM_001065991.1 GI:115471714 GeneID...")
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Gene Name

Os07g0414200

Description

SAM (and some other nucleotide) binding motif domain containing protein

Version

NM_001065991.1 GI:115471714 GeneID:4343016

Length

10443 bp

Definition

Oryza sativa Japonica Group Os07g0414200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:13718001..13728443

Sequence Coding Region

13718246..13718341,13724882..13725024,13725099..13725201,13725355..13725443,13725554..13725735
,13727092..13727201,13727965..13728186

Expression

GEO Profiles:Os07g0414200

Genome Context

<gbrowseImage1> name=NC_008400:13718001..13728443 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008400:13718001..13728443 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaaggaggcggcgagcgcgcggcggaggcggaggagtaccactgccacgacttcgagtgggaggacctccgggcggaggtggaagccaaccctgccttctcctaccacctctccccatttcccacgaccgtcggcaccccggagacgccgccgccgccgccgccctcggaggcctggacgagcttccaccgtcgccacacatgcggcaagtttttcaaggaaagaaggtatttgctaaaggaatttccagaacttcttaacagcaaggatagtgcaaaggttttagaggtgggttgtgggaatggaagcactgttgttcccattttacgctctagtccaagcacaactgtatatgcttgtgattgtagcaaagaaactctggagaaggcaaatgagattgtttgcagcacaaaaggagttgaagtcaaggataggttccatccttttttactggatgcttcgaaggaaacttttccagattggttgttctgcaaatcctgtcgaagtccatgctcaagtaattgtaatatgatagaagaataccctgcctttctcagagacaatccatgttgtgttgatggtgtggattttatcactatgatattcacattatcagccataccttttgacaatatgctagctacactagagcgttgtgtatctgttctaaaaccaggtggccttgttttgtttagggactacggactctatgacatgacaatgcttcggtttttacctcaccaaagagtgggattccgggaatacatgcgctcagatggcaccctttcatacttcttcacattagatacagtgagagaactctttcatgcctctggactactagagttggaactggggtattgttgtgtcatatcagtgaatagaaaaaaggggaagaagatgcaacgggtttgggtgcatggcaaatttcaaaaaccctaa</cdnaseq>

Protein Sequence

<aaseq>MEGGGERAAEAEEYHCHDFEWEDLRAEVEANPAFSYHLSPFPTT VGTPETPPPPPPSEAWTSFHRRHTCGKFFKERRYLLKEFPELLNSKDSAKVLEVGCGN GSTVVPILRSSPSTTVYACDCSKETLEKANEIVCSTKGVEVKDRFHPFLLDASKETFP DWLFCKSCRSPCSSNCNMIEEYPAFLRDNPCCVDGVDFITMIFTLSAIPFDNMLATLE RCVSVLKPGGLVLFRDYGLYDMTMLRFLPHQRVGFREYMRSDGTLSYFFTLDTVRELF HASGLLELELGYCCVISVNRKKGKKMQRVWVHGKFQKP</aaseq>

Gene Sequence

<dnaseqindica>10103..10198#3420..3562#3243..3345#3001..3089#2709..2890#1243..1352#258..479#ggtcagcaacgacaggacacggctgctattccgcttctttccgctcggaccagcccactaccggcccactactgaagtgaaaccaccctccgccgccgccgccgctcgccgtagtcacctccgccgccaccctctcttcccagtgctacctccccgccccgccgctttgccgcctccggctgaggcgaatttccagtatccaagccagtcggacataagtaagggcggggaggaagccgtgcctgcgagtttcgaccatggaaggaggcggcgagcgcgcggcggaggcggaggagtaccactgccacgacttcgagtgggaggacctccgggcggaggtggaagccaaccctgccttctcctaccacctctccccatttcccacgaccgtcggcaccccggagacgccgccgccgccgccgccctcggaggcctggacgagcttccaccgtcgccacacatgcggcaagtttttcaaggtttcaatctccgctctcctccctgttaccctgcgcagatctgtcgtctactttttttttccggactgcgcaaatcgttaggaattaggatttctattgtgcgagatagatgttcttcgtcgtggagacctccagtcctccacacttgttgaagctgcgttgttgttgttgtgatgtgagctaggtaggcaggagatcgagggaatgacagtgccaccgtgttccactgtttctcgaggcatgaaattagaacggaactccccatggtaatgcaatcccttgcatagatcgacacgatggcctgtaataaattccatacatttgttaccagatcgtccaatcggagatgatggtttggaataatatgctgctctgtttattctcccatgttattcatggcttgaggggcatatatcatgatggatattacgggccttgtggacctcttcgcagcgcagcatcttgttcgtatgagttttgactctttgagtcctacactagtaactcataccacagggttgctatttacatcaatcgtgtttcctttgtgttaggtgatctagtgtttttctccacattttccacagtttgctgctattgtgcttgggtacaatgatatcaagaaaatgtgacctagactttttctgtgaataggtaaggataatatgaattgatgtagtaagacactataactaaattttaaggaaacaaataagtacttttaaggaaacaagtaactaacctgatcatctcattttgttaggaaagaaggtatttgctaaaggaatttccagaacttcttaacagcaaggatagtgcaaaggttttagaggtgggttgtgggaatggaagcactgttgttcccattttacggtaatgtcctccaaagcattgttgtatttagtaaaaaaatatctatttgtagttgcaaatgcaaatcgttcaatgcttattttttttgttatagagtaattaaacattgatgtaggattatagccgcaaatatatttggtactttggttatcaaagtaaataatctagacaaaataaaaagagaaaaaaaacaacatgcactttttaacacgcacactggtgattaaacagctaatggtcactagtttgctagtcaaattgccagtatgctggtcagacacatattctcgtgacatttcttacctgccaacgtgctgcataaaagaattgtacccaatacaaacaaaagtgatttcttgctttttgcttagacttcttggaattccatttccatgttaggcatgtgcatatttctcacttaagaaatcatccaatccagcacaaagtccatgaagtatacttcaatctccaccgatccagcataatatcaaagcaaatcaagcgatctccatgagatgcttttaatcgctcgttgccattggcatgcagctgatgtagtctggttctgaattttttccttgtttaactgccagttctgtactgtttaactattatgctttctagctcagagttggtttggaactttggatttgtcaagttcatgcatctttgaggataaagaatacttttgcctatgggcatttgaaaactgttgacacccagcatcaacaaatacttctcctttcaatttcttctgcttctgaagttatacataatcctggaatgtaaaattttctgtctttcttttctttctttgtttgtaacatctgatgatttcagtttactatatcatactttttgttaactagaaaacttgttaaatttcattcttttttatttttcccctgaaaagactatttttggtttgccacttttccaacattctgttctgtgcatggtgctttaatcagtactagtgatgtatttattaaggaattttatcgcaaactggatagctcaataatgctatgaacaatcattgtaatatcttcattgaagtgatgcatattggatcaactttcaattagcgatgaatatgcaactcaagcactttatggattaacacttatggcatgatactctaattatgtatttataattgggcgagagcaaaaagaatagaattaccgctatatacaaccttttaggagcatacatatatgggatggaagttgcagataaacttcagagttgaacgtgcttgccataacttgaagtttatgtagttcatggtttaagtgattgcctcgtcataactactaatgatgacatcgttgctatctactctttctacagctctagtccaagcacaactgtatatgcttgtgattgtagcaaagaaactctggagaaggcaaatgagattgtttgcagcacaaaaggagttgaagtcaaggataggttccatccttttttactggatgcttcgaaggaaacttttccagattggttgttctgcaaatcctgtcgaagtccatgtgcgaaggatgttgaccttttactagtttaattaattgttttgaaattttcttttacccgaattatctactccaataatgtttgattcgatggtaccttttcctttcaggctcaagtaattgtaatatgatagaagaataccctgcctttctcagagacaatccatgttgtgttgatggtgtggattttatcactatggttggtagcactatctttaccctattttttgtcaaagcacttccattagcattataatgttgccatgctgtgagttctgaatgtatattgtaaaagtcaaacctccactatttatgctcttgtttacatcaagtttgtatgtacgcttttcagatattcacattatcagccataccttttgacaatatgctagctacactagagcgttgtgtatctgttctaaaaccaggtggccttgttttgtttagggactacggtaatgccctggccatactattgtattatatatcattgatcaataatcttgctgacatctctttattgtattaggactctatgacatgacaatgcttcggtttttacctcaccaaagagtgggattccgggaatacatgcgctcagatggcaccctttcatacttcttcacattagatacagtgagagaactctttcatgcctctggactactagaggtaactcggattgttttgacatgttctcagttttctagttactttccacctttctttgcccctgcatgtgcccctcatggtagcattcaatattttatgaattaaagatgtatgccttagtcgattgtttcgttccttgttagaacttctgtgcagatcataataaatgcatcagaattgctcttatcactattaaaattactttgtaccaaaccaatgtatcataatttctgtttcgctccaaaataatccagctatatatgattaaaatcatgagatatatttcaggcttctgtatatttgagtcatctgaaatttttacatttttgtccttttcgaaaacttattttataaatggacccctggaaaaacttattccgggagtggtcctttttggtgcaccagagtggctggcgccgtactccaacatagcggcgctagccaccctggcaccgtgaccgtgccaccttggcacaagggcaagcgttgaaggggtgacgtggcaaatgggggcgccagccactttggcgccgcccctcataccatggcgccagtcaccctggcgcacccctcctagggggccaagctctaaccttctgccttaggcgggaggttggcgccacacaccccaagcacagcgccaggttggctggcgccgcccccccacccacccccgaggacttctgcctcggccgaattgctggcgctgcccctcgaagcatggcaccagcgtgcttggcgctgctcccccaacccgtagatcttctgccttgggcgggtggatggcgctgccccctatagcacgacacaagggtgactagcgccgcccaccaccccccgaggccttctgcctcgatcgatttgctggcgccgccccctagcacggcgccagggtggctggcgccgacctcttcctccctgccaacttcaaatttcatttggacagtttgcaaacaatgcaaatatcgacaccaaatcacagtaaacatacatatcacaaaacaggttacacagcaaatattgacaccaaatcacatatcacatagtccacaagataactagattgacgaaaaaagtccacaagtccacaactccatcacatattccacacatcaaacaatactacaaatccatcacgtacttcatacaaccaacaagtccaaaagtccgtgaaacaagttaacatatgacacatagatcaacttcatagaaatcactttttccgttggcgccgaatagcttgtgagcccggagtgtatctacatttgaaaaaccaatgtttaaaacatttaaaaaacaaagtgagggaaatcaaataacacttgagaatggtaagctcattttacctctttttcgctggccgagtggatcacaagttgtattgggtgggctgtgatgcatgaggtgcatcggagactgcgacatgcctatctcctcggcgtctggtgcgatgtagccctcatcctcctcctcctcctcctcctcgtcgtcgccgctaggtggagcctgtgccttcccctttccccttccctgtggaatgcgtgacgacgacgaaccaccaacttgttcacgctcttctatcctgatggagtgtcgagcagtacttggacacacggattgaggtagtggtggtggtactctccgcggttggtacacgtcgtccaatccaaccgacctgtaacctaatcttgcagcaagtttgcggcacctttggcgaactttttgaattaaaaaaatagaagtttgttaggcataagtcaagtaatgcaaagtgttaaatcatttttacctctaagacattgcgaagtgtgttctccgtatcttcaccaccccttggagatcagagggcatgtcccatttaattcatactcctaaggagctctctggactaaaagcatgagaagatgtatattagggtttagggtgcaaatggaaatcattttgacaaatgcaagaaaacttacgactctgtctctaagtggggcgtgctccatttgatatccaaccctagtccgaacgtcgtagggatgtcgcccctcatcagagtcgcggtcttcctctatattggcttccgtccaagtagggcgtaggaacagtttatatgtcctatgcagccaacgaacgtactcagtaaaaagatgattttgctgtattgcctcgatgtacctatcgttcctttccgctgtcctccattcatcaatggatctgttatactctagcacccagtccttcaccttctttgttctcaccctgtcgtaccttgacaaatggaaggtgatgatgtgtcaaataagggtcaaatggtgcaaaattgaacattgacaatgaaagcaagcagagataaaaaatattacttgtgtagatcaactctagttgagatgtccttaacaagacattcttgtctcttcccaaactatcgcatgacatggtacggaaggtggtactcaactgcccagaaacaaatcaattggcactggtacatgaagtaatcggagcctcgattgcacaacgagatcagtgtaagacttgtagcctcagtggtgtggtatggtaaccactcaatctataaatgttgaagagttgtcgtaggttagtatttcaatcatataagtaaatgacgaattagaagtgatagtggaagtacttatatgtgtaggctgtaggcagtccatcacgttgatgtactgcttgtatgcgacgtcccggtgagcatgtgcagtggctatactctcaaataggtaggccactgtcttctccatgtctggctcattgtagggccaaagggtaaagctttgcctccacttaggcttgccaaccggtagtcttagccacatccacatctgaatcaccagcacacaaccactaatgttggatgatggtgcctggcgacaacaggcctcgaagagctgtctataagtccatgccaacaccgctgagccccaactaaaacggcccagatcatcaagtttagtgaccaaagaaatccaaattgccgaagcaatgtcacccccaacatctagaaaaagaacccctcccaacaagtgcaatatgtatgcacgggcatagcactcaacacgccatggctcagcgttgttgtctaggtatgaaaagttctggctaagtcaagagaggggtattccgttctgcttcttattgctcccttgcccctgctcaatgttgagtgcaatgccaaacaactgctctacttgtacacgtcatctatgattccatgtcttgcccgtcaccgcatgtccccgtattgggagggccaagatccccgcatggtccccatatgtgcaattccgaagcattgccaaacaaaggtctcgtcttctatccttgcccatccaagtcttctcgtaccaactcagtcttacttgcaccccctcaacgacgagaagaatatgtcacaaaattattcttaatgtaatgaggagacttgtttaggtgaagaacttctttcactcgtgaccttagcttccacctctccagtggtgagtggtgagatgaccatcactcttcaagatgtggctatgatcttggccctcccaatacagggacatggggtgacgggcaagacagagaatcctggatggcgtgcacaagtggagcagttgtttggcattgcactcaacattgagcagggataagggagcaagaagaagcataacggaatacccgtctcttggcttagccagaacttttcagacctggacgacgacgttgagccatggcgtgttgagtgctatgcccgtgtatacatcttgcacttattgggaggggttctttttctagatgctgggggtgacattgcttcggcaatttggatttctttggtcactaaccttgatgatctgggccgttttagttggggctccaacggtgttggcatggacttatagacagctcttcgaggcctgttgttgccaggcaccatcatccaacattagtggttgtgtgctggtgattcagatgtggatgtggctaagactaccggttggcaggcctaagtggaggcaaatctttaccccttggccctacaatgagccatatatagagaagacagtggcctacctgtttgagagtatagccactgcacatgctcaccgggatatcgcatacaagcagtacatcaacgagatggactgcctgcacatataagtactttactatcacttctaattcgtcatttacttctatgattgagatactaacctacgacaactattcaacatttatagattgagtggttaccataccacaccactgaggctacaagtcttacactgaactcgttatgcaatcgagactccgattacttcatgtactagtgccaattgatttgtttttggcagttgaataccaccttccgcaccgtgtcatgcgatagttcgggaagagacaagaatgtcttgttgaggacatctcaactggagttgatctacacaagtaatattttttatctttgcttgctttcattgtcaatgttcaattttgcaccatttgaccctattttacatatcatcaccttccacttgtgaaggtacgacagggtgagaacaaagaaggtgaaggactgggtgctagagcataatagatccattgatgaatggaggacagcgggagaatgataggtacatcgaggcaatacaccaaaatcatctttttactgagtaccttcgttggctgcataggacatatagactgttcctacgccctacttggacggaagccgacatagaggaagaccacgactctgatgaggggcggcatccctacgacgttcggactagggttggatatcaaatggagcacgccccacttagagacagagtcgtaagttttcttgcatttgtcacagtgatttttatttgcaccctaaaccctaacatacatcttctcacgctgttagtccagagagcttcttaggagtgtgaatgaaatggggcatgccctccgatctccaaggggtggtaaggatacggagaacaaacttcgcaatgtcttagaggtaaaaatgatttaactctatgcattacttgacttatacataacaaacttcttttttttttaattcaaaaagttagccaaaggtgccgcaaacttgctgcaagattaggttgcaggtccgttggattggacgacgtgtaccaactgcggagagtatcactaccactaccttaatccgtgcgtccaagtaccgctcgacactccatcaggatagaagagcgtgaacaagttggtggtttgtcatcgtcacgcattccacagggaaggggaaaggggaaggcacaggctccacctagcggcgacgatgaggaggaggatgagggctacatcacaccagacgtcgaggagataggcatgtcgcaacttcccgatgcgcctcatgcgtcacagcctacccaatacaacttacgatccactcggccagcgaaaaagaggtaaaatgagcttaccattctcaagtgttacttgatttccctcactttgttttttaaatgttctaaactttggtttttcaaatgtagatatactcagggcttgcaagctattcggcgccaacggaaaaagtgatttctacgaagttgatctttgtatcatgtgttaacttgtttcacagacttttggatttgttggttgtatgaagtatgtgatggacttgtagtattgtttgatgtgtggaatgtgtgatggagttgtggacttttttcgtcaatctagttagcttgtggactatgcgatatgtgatttggtgtcaatatttgctgtggaacctgttttgtcgatatttgcattttttgcagactgtccaatgaaatttgttgttggcagggaggtagaggtcggcgccagctaccctgacgtcgtgctgggggggcaacaccagcaaatcggccgaggcagaaagcctcaggggtgggagggttgctggcaccgtgctatggggggcggcaccagccacccgctcgaggcagaaggtctacgggttgggggggacggcgccaagcacgcttgcgccgtgcttcggggggctgcgccagcaattcggccgaggcagaaggcctcgagggtgggaaggggggaggggcggcgccagccaacctggcgccgtgcttgggggggggggggtggttgcggtgccagcttcccgcccgaggcagaaggttagggcttggcccctacctaggaggagtgcgccaggcacgctggcgccgtggtatgaggggcggcgccagtgtggttggcgcccccctttgccacgtcaccctctccacgctcgcccttgtgccacggtggcacggtcacggcgccagggtggctggcgccgccatgttggagtacggcgccagccactctggtgcaccagaaaggatcattcctgtaataagtttttcaaggggccatttgtaaaataagttttaaaaaaggaccaaaaatgtaaaaatttcagtttgtgtcattggtgctttggtccagtttccttgtatgtctgtaacttatgaaaccattgacttgcatttgcctatcattgtgcagttggaactggggtattgttgtgtcatatcagtgaatagaaaaaaggggaagaagatgcaacgggtttgggtgcatggcaaatttcaaaaaccctaaagttgttaagttgatatgataactaccgccagtacatgtagtaatgctaaggcaacttagattgtagggttttagatcttgccgtttgtttcctgtgggccctgagaggagaaatcgtggcctggtaaacttattgaaattgagacactgtaactacaaagcttgctgcaggtaaacttactgttttgaacgttaaaatttttaatggtcaaggccaccttccgaaggtgagccttttgtttgtg</dnaseqindica>

External Link(s)

NCBI Gene:Os07g0414200, RefSeq:Os07g0414200