Os07g0558000

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Revision as of 08:41, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os07g0558000| Description = ABC-1 domain containing protein| Version = NM_001066506.1 GI:115472744 GeneID:4343579| Length = 5848 bp| Definition...")
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Gene Name

Os07g0558000

Description

ABC-1 domain containing protein

Version

NM_001066506.1 GI:115472744 GeneID:4343579

Length

5848 bp

Definition

Oryza sativa Japonica Group Os07g0558000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:22927907..22933754

Sequence Coding Region

22929425..22929526,22929788..22929943,22931048..22931317,22931530..22932844,22933432..22933460

Expression

GEO Profiles:Os07g0558000

Genome Context

<gbrowseImage1> name=NC_008400:22927907..22933754 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008400:22927907..22933754 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgctacggctggtggggatcggcgagaggctgttggcagtcggaacaaatagacgggcagcctatttttcccagccgagccacaggagtggctactacacagcagcgagggacaatggattgtcggcaaagcgaaagattccaactgtcttctctagaatgttctcacattacaaggtaattgtcaggaagaacaaagctggggatcacaagtgcagaaataggatttcaaggggattccgtaccttctctgggacagtcgcgaattcatcggcaacacagcacgcccaattggcatggaagcggctcagtcatacatacatgtacagcggaccccggtttccattgatcagccgagcagcctgtgctctaagcttttccttcacgaggttccatgttgtccctggggtcatggctctagcatttggcaagtttgcattgtcacggcctgtcctggcagattcaccacacctgcccacaatggaaggtattgtcacaaatgcgcgggatactcgccagtttctgtcatccatagtttggtcaatctgggagggtgtcactttgcttattagagctgtgcatttggcaatcttgttcttccctgcaactgcattgtctccatttgctgatactttcagtgttggatttagaaggagatggcttcgtcttgtgcgccgtacccttgaaatagctgggccagcatttatcaagtggggtcagtgggctgcaacacgacctgatctttttccaagtgatctctgtgttgagcttgccaagcttcatagtgcagctccagcacatggatttgcttacagcaaagctaccattgagaaggcgtttggtcgtaaactttctgaaatatttgagacttttgaggaggaacctgtagcttctggaagtattgcacaagtacatcgagctacattaagagatcaacatactgaaaagcatgttgctgttaaggtgaggcatcctggtgtgggtgaatcaatcaagaaagactttttactcatcaatcttctggcgaaagcttcgaatgttgtccctgggttgagctggctgaggctggatgagagtgtccgtcaatttgctgttttcatgatgtctcaagttgacctttcaagggaagctgctcatttgagtcgttttatctacaatttccgcagatggagacatgtgtctttcccaaagccattatatccactagttcatccatctgtccttgttgagacgtttgagaatggagaaagtgtttctcgttttatggatgagattgaaggaaatgctcggatgaagagagatcttgcccacattggcacatatgcattcttgaagatgcttctggaggacaattttattcatgcggatatgcatcctgggaacattcttgtccgtctaaatgagagaaaacctaagaggaaactgtttttcagacctaagccccatattgtgtttcttgatgtgggcatgactgctgaactcacccgagatgaccgtgataacttacaacagttcttcaaggcagtggccaccagggatggtcgtactgctgctaactgtactctgcaattatcaaaacagcaaagctgtccaaacccagttgcctttattgaggaattggataagacattttcgttctggggaacgcctgaaggggacattttccatcctgttgaatgcatgcatcaactgcttgacacagttcggcgccacaaagtcaacattgatgggaatatctgtactgtaatggtcacgattctggttcttgaggggtggcaacgcaagctagacccaggctttgatatcatgcacacgttgaagactctactactagacaaggatataaagcaaccagttgattttttctcataa</cdnaseq>

Protein Sequence

<aaseq>MLRLVGIGERLLAVGTNRRAAYFSQPSHRSGYYTAARDNGLSAK RKIPTVFSRMFSHYKVIVRKNKAGDHKCRNRISRGFRTFSGTVANSSATQHAQLAWKR LSHTYMYSGPRFPLISRAACALSFSFTRFHVVPGVMALAFGKFALSRPVLADSPHLPT MEGIVTNARDTRQFLSSIVWSIWEGVTLLIRAVHLAILFFPATALSPFADTFSVGFRR RWLRLVRRTLEIAGPAFIKWGQWAATRPDLFPSDLCVELAKLHSAAPAHGFAYSKATI EKAFGRKLSEIFETFEEEPVASGSIAQVHRATLRDQHTEKHVAVKVRHPGVGESIKKD FLLINLLAKASNVVPGLSWLRLDESVRQFAVFMMSQVDLSREAAHLSRFIYNFRRWRH VSFPKPLYPLVHPSVLVETFENGESVSRFMDEIEGNARMKRDLAHIGTYAFLKMLLED NFIHADMHPGNILVRLNERKPKRKLFFRPKPHIVFLDVGMTAELTRDDRDNLQQFFKA VATRDGRTAANCTLQLSKQQSCPNPVAFIEELDKTFSFWGTPEGDIFHPVECMHQLLD TVRRHKVNIDGNICTVMVTILVLEGWQRKLDPGFDIMHTLKTLLLDKDIKQPVDFFS</aaseq>

Gene Sequence

<dnaseqindica>4229..4330#3812..3967#2438..2707#911..2225#295..323#gcgcaaatccgaaaagaaaaacaaaagaaaaaggaaaaaaaaggggggaaaactcaggaagacgactcctcgccgccgacctacccgagcgaggagcaccccggcgggcggcggcgcgtggcggatcgcgcgggttccggctccgagcctccccctcccctctctctctcctgggctcgtcgtagtcgcggcgggcgcgggaggtggtctccggcggcggcggggcgcgtggtatggtccgtggcggcggcgggggctcgaccacccggtgaagttttttttttcttctccccgatgctacggctggtggggatcggcgagaggtgcgtgtctcgattcggccctcccgtggcttcccgtccttgtttcagattgggtggatcgggggttccagatttcgttaggagcgggtcggtttttggcttaactctgcctacttgtggaagcagtatgtcacgtggcgaattcggtgctagttttagtttctcgatttgtaggggtatagcgcggaaattggtagctgtggcagtttggaacgttgagattgctaagatgaattttgggcatcaaatgtagcttaaattggagattggaggatattcatggaattgtacattgaggggagctagtgaaccttagccaacagagtgaccaatttgtgatttaatgaatgcattgtgcattgccgcaattgggaaattgtctgtatatatgcttgtttaaatgccatgtagttgggagaattagggaaataaagcaattggtgtcttacttactgaatacatcgtgtattgcattggctgtgctgaattcttaattttaactgttgttaaacatagggttctgacaggtgtcaattaaagcttgagaacccacaaattcttatgttctgttttacctttgtaagcaggctgttggcagtcggaacaaatagacgggcagcctatttttcccagccgagccacaggagtggctactacacagcagcgagggacaatggattgtcggcaaagcgaaagattccaactgtcttctctagaatgttctcacattacaaggtaattgtcaggaagaacaaagctggggatcacaagtgcagaaataggatttcaaggggattccgtaccttctctgggacagtcgcgaattcatcggcaacacagcacgcccaattggcatggaagcggctcagtcatacatacatgtacagcggaccccggtttccattgatcagccgagcagcctgtgctctaagcttttccttcacgaggttccatgttgtccctggggtcatggctctagcatttggcaagtttgcattgtcacggcctgtcctggcagattcaccacacctgcccacaatggaaggtattgtcacaaatgcgcgggatactcgccagtttctgtcatccatagtttggtcaatctgggagggtgtcactttgcttattagagctgtgcatttggcaatcttgttcttccctgcaactgcattgtctccatttgctgatactttcagtgttggatttagaaggagatggcttcgtcttgtgcgccgtacccttgaaatagctgggccagcatttatcaagtggggtcagtgggctgcaacacgacctgatctttttccaagtgatctctgtgttgagcttgccaagcttcatagtgcagctccagcacatggatttgcttacagcaaagctaccattgagaaggcgtttggtcgtaaactttctgaaatatttgagacttttgaggaggaacctgtagcttctggaagtattgcacaagtacatcgagctacattaagagatcaacatactgaaaagcatgttgctgttaaggtgaggcatcctggtgtgggtgaatcaatcaagaaagactttttactcatcaatcttctggcgaaagcttcgaatgttgtccctgggttgagctggctgaggctggatgagagtgtccgtcaatttgctgttttcatgatgtctcaagttgacctttcaagggaagctgctcatttgagtcgttttatctacaatttccgcagatggagacatgtgtctttcccaaagccattatatccactagttcatccatctgtccttgttgagacgtttgagaatggagaaagtgtttctcgttttatggatgagattgaaggaaatgctcggatgaagagagatcttgcccacattggcacatatgcattcttgaagatgcttctggtatgcatgtttacttattatgtgtgtttccttctgttctccttttcacctgggtagtggtgtttgtatctgactgggtaggctggtattgaggattgcattcataagagcttcagtagtgtttaatactgattttttcccctaacatatggcacattgctcctattagaatttctgtcactaaagtttctgctatcaatatctgtctccaggaggacaattttattcatgcggatatgcatcctgggaacattcttgtccgtctaaatgagagaaaacctaagaggaaactgtttttcagacctaagccccatattgtgtttcttgatgtgggcatgactgctgaactcacccgagatgaccgtgataacttacaacagttcttcaaggcagtggccaccagggatggtcgtactgctgctaactgtactctgcaattatcaaaacagcaaagctgtccaaacccagttgcctttattgaggtaaattctaaaactatgctgttggggaacatttagaatttcacatgctatgtttgattgcagatagcttcatttcttaatcaggtacttcatatatcatacacagaataggagtgtggtgaggttttgatgcaacttgtgtctgtctacatatacattacgatattagatggtgttagggaccttatacaacataaacaatcgcagaagtttcagttgttaggtttttggggctttggtttcagaacgtgacttcttcaataggctaatctttgctcgaagtagtcaccctttgtactgtataggcattttcatgtattggaatctgattttcttatcagtttagatctagatttgatgtacaaaatattgaaaactgtattactagatttcctattaagattaatttcataacgttatatgctaccacaattcactaaaacatgctagaattcatgcagctaaaactgttaattttatatccaaacaatgtagttttcatatatgacaaagttaaatgtattttttttattgaaaaactcttaatatttacacaaatgtaatgactttggaatatgtgagaatataacttagtggtcaaagtgttttgttgactttgaaaataaaaggagatgtatttttttgttttatctgtaggaattattattattacatatcgatacgaagttccaaaatgtaatggtcaaagtttcatccaaacttgaaaagtcagtaatgtcaaataaatactccctccaatttttaatgtatgatgttaacttttagacataggtttgaccattcgccttactcaatttttttgtgcaaatatgcaaaagtataagtcacacttaaagtatctttaatgataaaacaaaccacaacaaaataaatggtaattacatttttttaataagacgaacggtcaaacgtatgttcaaaagtcaacagcgtcatatattaaaaattggaggaagaacggaaggggtatagaactatagattgtattaccagcctttggctattgcatgttgatttctaaactattattgtcatttaggtacatatttgtttgcataataattatatttcttttattggtaggaattggataagacattttcgttctggggaacgcctgaaggggacattttccatcctgttgaatgcatgcatcaactgcttgacacagttcggcgccacaaagtcaacattgatgggaatatctgtactgtaatggtcacgattctggttcttgaggtaaacttatacattgtaatgtttgaaatctataaaatatttaccatacgtcatttattggattatatatctctacaaaaggatgctcagataaactaatctagggaaatattacttactagtgggtgtggttagcacttagcaaccacctttttctatgttacaggctaatctgatatccattgcttcctaagacctgaatgtgcctacggaaagaaacacatcatgcttatttatacaaggctattaattcttttgtaggggtggcaacgcaagctagacccaggctttgatatcatgcacacgttgaagactctactactagacaaggatataaagcaaccagttgattttttctcataaacaagttcatgctttcaagtgccaaatctacgagcctcaggtactgtgcatttgtgcaaacaagtcatcgtttcttttaagtacatttgtgcaaacaagtcaccgtttcttttaagtttgtcttcctctcttgaaatttttttggcatacttgttctgtacttgtgttaaaagaataatacacatgatgataaccagccttcaacattatcatgggaaatatggcttattttttagggaataaaaaagagaacttctttagtgatcagtaccccagtgggttatagcaagtacattcagagcaatatttctaaattaacctccaactgattaggtgactattctttatgataagaagttgggataccgtctcaattataccaaaaaaaggaggggggagggtgtcccatcttttgtggtggactggttggccaggagcagttggagaatccacttggatctccgctgcatatatgctgtcacggcatgtgtacgcttggcaacggtcattaacttgatgctggcatatagcctcgttagcaacctgaccgtgctttatactatcctttcctcgtttcatgcctcagtatccatgctaaactgaaattagccgcttggttattcagcaaaatcaacaatctaacctgtgcaatctctctccttgacagaatatgcatatatacagcagagaaaggtgatgacaccatgggacagaagttcgcaaaccaagcaatctatactaatgccttatgtcatgttatgttctctctctttttttttaaacaacctctctacctgcaacttacggcattgggtttcacatttgacaaccttcagtgctaaaattttgtccagcgccttggtggagtaagccaccaaaattccttgtgctaaaatctcttatcgagaaacaaaccctgttagatgtagcaaccgaatattgataacgagcagaattacgttgcagattatacagaattttacttcctgctatgctgctgcaatcttgatgtgaatcaacttctgcgagtgatgatagacatttataaatggcgtatcattatattagccgttgttaaactctctgcagggctgaatgattgggctggaggaccgaggacggtgtcctttcgggcttcagcttcagctctctttccatggttcacctgtgctttcgctgcggctgccggaggacgaagaagtgagaaaaggtgcccccaaaaggtctgtgtcctgtaggattagcaggatccactacaccgcaggttgagtcagtccagtgaggattgaggatatcatcgactcaggctttggtcgccggcggccgggaaagctggtatttgccgagctgattaaaagtaggccagcctttcagtttaggttaggtcctgacatttaataaaagagaacctcactacagttagttaacgatagtagtaacatggaggagtagtattgtcaagaaaaaaggtgcagactgtataatcatcatttagtaatgacaaactattttctctct</dnaseqindica>

External Link(s)

NCBI Gene:Os07g0558000, RefSeq:Os07g0558000