Os07g0583500

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Revision as of 08:43, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os07g0583500| Description = RNA-binding region RNP-1 (RNA recognition motif) domain containing protein| Version = NM_001188346.1 GI:297725822 Gen...")
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Gene Name

Os07g0583500

Description

RNA-binding region RNP-1 (RNA recognition motif) domain containing protein

Version

NM_001188346.1 GI:297725822 GeneID:9266081

Length

8121 bp

Definition

Oryza sativa Japonica Group Os07g0583500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:24294036..24302156

Sequence Coding Region

24294036..24295120,24295155..24295646,24297002..24297118,24297243..24297322,24298667..24298972
,24299984..24300172,24300300..24300517,24300608..24300907,24301056..24301154
,24302046..24302156

Expression

GEO Profiles:Os07g0583500

Genome Context

<gbrowseImage1> name=NC_008400:24294036..24302156 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008400:24294036..24302156 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgctatataaaccctcctcctcctcccaagaattaggagagggacaccaagtagcgaaatccacagcctttttgatcgaattgccatccgcggcggaatccatttcgatttggaaccaggaaaacataattttgggtcaatgtggaaaaacacgagttggtgcaaatgtttcctcttttgtgggtgcaaacagagatagatgcaaggaacggggggcatatgctccaatgtcaactggttttgcggcacaagccaagttggatcagttggagccatcatgtgcaaatgctattgttcagtacgccaacatatcaaagccaagttggatcagttggtatgcattttcagcccgggatgaggcaatacaagccttgattaatgaggcgaagtcatactacatgaggttccccccaatacaacacctccagcagctacccttactgcagtcaccttcaacgcggtatgattatgaatccccatcgctctatttggagcctcagtttcagtctttgaacattccaggtgatggcttgccaagggattatctaaatgcacaagttaatgttctcgggtctgatgtccatgagatgcacaatcagaggcaatctcatcctcgtggccgacatagggatttctttggtgaaggttccgattttacgatttatattaccatcaactttgatggcggcagattaactaaggaaaatatttgggactacttcaagaagttcgggcctgtgatcaatgtctaccttagctgtaagccagggaatgaaaagtacactttcggttttgtgacatttgaaaatgctgatacggtgagccttctcttatcaaagagcacacctcatttcatctttggagtaaaagttagagtcaagcgttacctggaatggaccaaacaagagcaaaggaagcttcctcaagaaaacgaccattttgacaatgttgcacacaggacatcatgtgccaatgccttcgatggcatgccaagggattacctaaatgcacaagttctcgggtctggtgtccctgagttgcacaatcagaggctatctcatcctcgtggctcacagagggatttctttggtcacaatcagaggcaatcccatcctcatggctcacagagggatttcttcggtcaaagtaccgagtttacgatttatattaccatcgctaagaacatattgacttggaaaaatattcgggactacttcaagcagcttcctcagagaaacgaccgttttgacaatgttgcacacaggacatcatgtgacaatgccattgagggtcactctggacaaaaaatgccgaatttcattgaactttcccaggagacactgacacatcaatttggagattttgattcacctctaacacataacctctctgagaagaaaacagaatctccagaaggtcctggatcaaagtacttttcaattgagtttcatcatggggggtttttctgtggtatgggagtgaaccgcacatatatggatggcaaagtagactggtttgacaatattgattctcgagattggggtagatgtctacatttagcagactttgttgccatgcttggatatgactctgatggaaagttgaaaacttattggttattgcctggaaagaacatgtctgatggattgaggatcatagacagtgaagttgagatcaatgtcatgaaatcagtgtcaaataaaatcaagaattttgtcatctattttgatcatactaatcatgtctcaggaagaaatatagatgacattgttctgagcccagaagctgagttgccagaggtgttcaaccctagtagacagtgccagcagacagaggaggcagaaagcgaggatagaaaccctaggaatgcacctgatggacatgtagtgcatgaagaattggatgttgatgacagtgagtctgattctgattttgttgatagtgattatgagtgggaggatgatgatgatgacctctttgaggaaaatgtggatggtgatgtggaagagggggataggaagaaattcaaccataagaaggctgcaggtagtgtgttgaagggcaagaaagttgtggcagatttgtcagaaggtgacacaagtgatgatgaacaactgcacttgccaagtgatgatgatgatgatgagttcaacttgaagtttaagtcttttaatcctgaagacattaacaacccaatcttcaaagtaggcatggtattctcttcagttgaattagttagaaaggctatctctgaatatagcatgaagaacagggtggacataaagatgcccaggaatgatagaactaggatcaaggcacattgtgcagaaggatgcccctggaacttttatgcttcaatggacagcagggcaaaggccttcattgttaagacatatgagccccatcacaaatgcaagaaggagtggattctaaaaaggtgtactgcaaaatggttagctgaaaagtacactgagtcatttagggctgatgggaagatgaccattcctagctttgcaaagacagtacaaaaagagtggaacttgactccttcaagaagcaagcttgcaagagctaggaggctggccctaaaagagatatatggtgatgaaatagcccaatacaacttgttgtgggattatggcaatgaactaaggaggtccaatcctgggagttctttctatcttaggttagatgagggcaaatttagtagcttgtacttctcactagatgtatgcaagagaggattcctcagtggttgcaggccaatcatttgtctggatggttgccacatcaagaccaaatttggaggtcaattgttgacagcagttggaattgatcccaatgactgcatataccccattgcaatggctgtggtagaagttgagtctttcagcacatggacatggtttcttgataccttgaagactgaacttgggatagtgaacacctctccatggaccattatgacagacaaacaaaaggtaaccatttga</cdnaseq>

Protein Sequence

<aaseq>MALYKPSSSSQELGEGHQVAKSTAFLIELPSAAESISIWNQENI ILGQCGKTRVGANVSSFVGANRDRCKERGAYAPMSTGFAAQAKLDQLEPSCANAIVQY ANISKPSWISWYAFSARDEAIQALINEAKSYYMRFPPIQHLQQLPLLQSPSTRYDYES PSLYLEPQFQSLNIPGDGLPRDYLNAQVNVLGSDVHEMHNQRQSHPRGRHRDFFGEGS DFTIYITINFDGGRLTKENIWDYFKKFGPVINVYLSCKPGNEKYTFGFVTFENADTVS LLLSKSTPHFIFGVKVRVKRYLEWTKQEQRKLPQENDHFDNVAHRTSCANAFDGMPRD YLNAQVLGSGVPELHNQRLSHPRGSQRDFFGHNQRQSHPHGSQRDFFGQSTEFTIYIT IAKNILTWKNIRDYFKQLPQRNDRFDNVAHRTSCDNAIEGHSGQKMPNFIELSQETLT HQFGDFDSPLTHNLSEKKTESPEGPGSKYFSIEFHHGGFFCGMGVNRTYMDGKVDWFD NIDSRDWGRCLHLADFVAMLGYDSDGKLKTYWLLPGKNMSDGLRIIDSEVEINVMKSV SNKIKNFVIYFDHTNHVSGRNIDDIVLSPEAELPEVFNPSRQCQQTEEAESEDRNPRN APDGHVVHEELDVDDSESDSDFVDSDYEWEDDDDDLFEENVDGDVEEGDRKKFNHKKA AGSVLKGKKVVADLSEGDTSDDEQLHLPSDDDDDEFNLKFKSFNPEDINNPIFKVGMV FSSVELVRKAISEYSMKNRVDIKMPRNDRTRIKAHCAEGCPWNFYASMDSRAKAFIVK TYEPHHKCKKEWILKRCTAKWLAEKYTESFRADGKMTIPSFAKTVQKEWNLTPSRSKL ARARRLALKEIYGDEIAQYNLLWDYGNELRRSNPGSSFYLRLDEGKFSSLYFSLDVCK RGFLSGCRPIICLDGCHIKTKFGGQLLTAVGIDPNDCIYPIAMAVVEVESFSTWTWFL DTLKTELGIVNTSPWTIMTDKQKVTI</aaseq>

Gene Sequence

<dnaseqindica>7037..8121#6511..7002#5039..5155#4835..4914#3185..3490#1985..2173#1640..1857#1250..1549#1003..1101#1..111#atggcgctatataaaccctcctcctcctcccaagaattaggagagggacaccaagtagcgaaatccacagcctttttgatcgaattgccatccgcggcggaatccatttcggtaccaagcaagcaagccggtgcgagaggcgtcgcggcattagcgtcagcggccgcttcgtcgtcttcgtctcccttctcccccctgcccccccttcgccgctcggtgtcgcagggtggtgcgcttcctggacgacaatgtatgtactagtaaattggggagctagcgcggcgttgcatttgctcttttctgtcgtttgcttgatccttgtgcgttcttgaggtgttttgtggagcatctggtacaatcaagagcggttttggttgaattccggggacgggtgggttcttggctagaacgatccttcgcttcttgtcttttctttacgcgggtgaattcatgtagcggttcgtggattatctggtacaatcttggtggttctagttgaactctggatactgattcttggccgggacggtgccttttactcttgtgattctttgcgggttcagctgttctaggggttcgtggattatcaggtacaatcttggcggttttagttgcactctggatactgattcttggccagaacgatgttttgtactcttgtgattctttgcggggtgagctcttctaggggttcgtggagtatctagtacaatctgagtggtattggtttaattccgagattatgttcttggctggaatagttcttgtttgtagatatacaacttctcttttcttcttttggtgtgttcttgtggaggcaggtctatggattacaggaggagtagcgttcggctagttttggttggattctgagaagggttattggaaagaacagttcttgctcattgggttcgttctcttactatggatattttggctgggttggtgggtatagagtttctgttttgcatccaacagataactttgcactttgttcttcagatttggaaccaggaaaacataattttgggtcaatgtggaaaaacacgagttggtgcaaatgtttcctcttttgtgggtgcaaacagagatagatgcaaggtttccggttttgcttgcactaattttctctactgccaaattttggtttaattgttatccttgtaatcttttagaaataactgctgatttttccaatcagaaatattggcttgcagtgggtttttatattttgtcccttgtgttgcaggaacggggggcatatgctccaatgtcaactggttttgcggcacaagccaagttggatcagttggagccatcatgtgcaaatgctattgttcagtacgccaacatatcaaagccaagttggatcagttggtatgcattttcagcccgggatgaggcaatacaagccttgattaatgaggcgaagtcatactacatgaggttccccccaatacaacacctccagcagctacccttactgcagtcaccttcaacgcggtatgattatgaatccccatcgctctatttggagcctcagtttcaggtaggtagttgttatcatggagttaagtttccatgcctccccgttggtcaaagtggaggttttgacatcccattttctgcgcatttgcagtctttgaacattccaggtgatggcttgccaagggattatctaaatgcacaagttaatgttctcgggtctgatgtccatgagatgcacaatcagaggcaatctcatcctcgtggccgacatagggatttctttggtgaaggttccgattttacgatttatattaccatcaactttgatggcggcagattaactaaggaaaatatttgggactacttcaagtattttcttctaacctttgtattatgtttactagtttggaggacaatactaggtgtaatatgatttaaagtttcaaattataccactacattcaattcaataattttacgatggtatttcttccaggaagttcgggcctgtgatcaatgtctaccttagctgtaagccagggaatgaaaagtacactttcggttttgtgacatttgaaaatgctgatacggtgagccttctcttatcaaagagcacacctcatttcatctttggagtaaaagttagagtcaagcgttacctggaatggaccaaacaagagcaaaggtctgttatctaactttgctgtttcttttgttgattgcttctcgcagtttttttaattaacctacaatgtaaacctactgttgttttcatccaaacgatatctgagttatggtttacaaactatactgttgagcgcctgttaggaggagtacatgttaacaattcccaaatcgatccctatgtcctggcaagcagcttggtgtgcctctttttcagtggggttatgtaacttacgtcacagtatcctgctgctaattgcaggctttgagtttgatgtgttctgtttgttctgaggtccaaatggcagtctttccacaatgtactctcccttttctgatcttcatttatttggccggcaaaagatcaatccctctcatccaaggacttgcacaaaatcttccataagtgcattctttaggattctaaaattagttattagttgaagattctttctggaggtcaatttgagagttcctgaaatatggttgttaataaaagtatgatctattatcggggcctccttttgcatggcaatggttggtggggactaatttgattttaatattcattcagtctataggacagagttcatgcttttatgttatcatgcactcatgcatgtgcaggtgtgcttcataaatcatattgacagtttattcatttggttacttattttaaatgtgtagtcaaatcgtccattttgttccacatgtaccgtctttgtgaaaaaataataactagcttttctggctgtacttaagttgcagattgaatttttcagtaattatataattacgtacatcttaaacaagtacctgcaaggtatccgtttaatttttgggcacatggaaatagtttgttttcactgtacatttaagttccacgagacatttatttactgatttaatggttggaaattagtttgcttttattgaactaatatttttagcttgttcaatcgtttttgctctcttatttacacattcaaacctaacatgcttactgatacaggaagcttcctcaagaaaacgaccattttgacaatgttgcacacaggacatcatgtgccaatgccttcgatggcatgccaagggattacctaaatgcacaagttctcgggtctggtgtccctgagttgcacaatcagaggctatctcatcctcgtggctcacagagggatttctttggtcacaatcagaggcaatcccatcctcatggctcacagagggatttcttcggtcaaagtaccgagtttacgatttatattaccatcgctaagaacatattgacttggaaaaatattcgggactacttcaagtattttcttctaaacttagtactatgtttactttgttttgaggacaagactaggtgcaatatgatttgaagtttcaaattataccactatgttcaattcaataatattatgatggtatttcttctaggaagttcggacctgtgatcaatgtctacatcccctttaagccagacaatgagaagcacactttcggttttgtgacattcgaaaatgatgacacagtggggcttctcttatcaaagagcacatcgcattccatcagtggagtagaagttagagtcaaagccttacctggataggaccaaacaagagcaaaggtactttatctaacttcactgtttcttttgttgattgcttctcagattgtctttaattaaccagcattttaaacctgctgttgtttttgttcaaacaatatctgattcgtgatttacaaactatactgttaagaacctgtttggataaaggggttagactcaaatctatagtaagtacattttaaccattcccaaatcaatccttctctgtcctggcaagcagctgggtgcacctctttttcagaggggttatgtcacggtattctgctaattacaggattagagtttgatgtgttcttgtttgttctgaggtccaaatggcagtcttgccacagtgtcctctcccttttctgatcttcatatatatagcttgcaaaagatcaaatctctctcatctaaggacttgcacgaaatcttccataagtgctttcttgaggattttaaaactagttattagctgaagattaattctggaagtcaatttgagagttcttgaaatgtggttgttagttgaaatatgatcttgaccagggacttctttttcatggcagtggttagtggggactaatttgattttagaaataattattggtctatgggacatcagtttcacgcttttttgttatcatgcactcatgcgtgcttcataaatcatactgacatattactcatttggttaattattttaagtgtatggtcaatttgtccattctgttccacatgtaccgtctttgtgaaaaaataataactagcttttctgtctgtacttaagttgcagattgaatttttcagtaattataatttatacgtacatcttaaacaagtccctgcaaggtagccgtttaatacatggaaatagtttgtttttgctgcacatttaagttccacgagacagttatttactgatttaatggttggaaattagtttgcttttgttgaactaatattttatgcttatacattgtgcaattgtttattctctctgtatttacatgttcaaacataataacatgtttaccgatacaggcagcttcctcagagaaacgaccgttttgacaatgttgcacacaggacatcatgtgacaatgccattgagggtcactctggtgagtaaatctgtaaatgcccttccttggctttgtgctgtgccacttctgatttagttctagacttatggttgtgattctatattttgacttattaagccatttcttttgtcatttctgataggacaaaaaatgccgaatttcattgaactttcccaggagacactgacacatcaatttggagattttgattcacctctaacacataacctctctgagaagaaaacagaatctccagaaggtattcatgtggaatttccctactccatattcatccttgtttttcattaaactgttatagtttttatattagtaagtcttagggcctgtttggcacagctccagctccaactccacccctcctggagctggagctcagccaaacagttttagctccaccaaaactaggagtggagttgggtggagctctctcacaaaatgtaatagagttgtggagctgggtttaggcagctccacaactccactccagactcaacttctggagttatatttaggagttggagctgtgccaaacaggcccttacttgattctgtgatgttttagatgatcatgcgacaaaagagtctaatgtggatgaatcttcagaattctcagctatgtgagtaatgagtactcctgtttctatttgcagattaaacagtcttatttcaacctgtacgatgcattattgcttctgagaacattattctttaagcaacacggaaacaaattaatgaaattaagagttaatacttttcataatttattcatgagaaagatcaagatatgttggaaaattggagcacttctgatgctgctgcacagttgtacatctgtaacgttgaagtggcatttttcattctttatgcagcatagaaacttttttgagtaaagttcacagccggtccttaaagttgtagcgaggtgtcacttaggtctatgatctaggaaaattgtcaatacggtccgcgatcttgtttaagtgaatcatttaggtccaaagcgcctctgaccgggttgactggcttacgtggccgtccacggtggcagcatttttgcattttagccccgccgcatcttgcctcccctatttccgatccaggcagtctcccccaaatcctcctccttctacacgcgaccaaaattgacccccattctctcgttctggccgagctaggagcactccgaggaggggcggcgattagggcggagtcggcgatcggggtcagggtggccggagacgcgttctgggtggcgcgtttggccgccaaccgattgggcgccgtcatcggaggcgtcggaggcgcgagatggacctgaccttgcgagatgaaggcgcacctgcgcctgtttatagtgagtgtcgtcgtcatcttttaatccctttcatttggtaagtttaatctgtgattgagaggtttggaagtttgtttcttcaagaaatttgggacttttggtcggtggcaattttttctagggtttcatctagaatgcaattagttgattttgtgttggtaaatgtgtgtttttttagctattgtgatgtaatgtagggtttagtatgttgtctcatcccgaatgtgtgcactatataggtcctggatcaaagtacttttcaattgagtttcatcatggggggtttttctgtggtatgggagtgaaccgcacatatatggatggcaaagtagactggtttgacaatattgattctcgagattggggtagatgtctacatttagcagactttgttgccatgcttggatatgactctgatggaaagttgaaaacttattggttattgcctggaaagaacatgtctgatggattgaggatcatagacagtgaagttgagatcaatgtcatgaaatcagtgtcaaataaaatcaagaattttgtcatctattttgatcatactaatcatgtctcaggaagaaatatagatgacattgttctgagcccagaagctgagttgccagaggtgttcaaccctagtagacagtgccagcagacagaggaggcagaaagcgaggatagaaaccctaggaatgcacctgatggacatgtagtgcatgaagaattggatgttggtgaagaaatagttgagctttcatataaactcagatgacagtgagtctgattctgattttgttgatagtgattatgagtgggaggatgatgatgatgacctctttgaggaaaatgtggatggtgatgtggaagagggggataggaagaaattcaaccataagaaggctgcaggtagtgtgttgaagggcaagaaagttgtggcagatttgtcagaaggtgacacaagtgatgatgaacaactgcacttgccaagtgatgatgatgatgatgagttcaacttgaagtttaagtcttttaatcctgaagacattaacaacccaatcttcaaagtaggcatggtattctcttcagttgaattagttagaaaggctatctctgaatatagcatgaagaacagggtggacataaagatgcccaggaatgatagaactaggatcaaggcacattgtgcagaaggatgcccctggaacttttatgcttcaatggacagcagggcaaaggccttcattgttaagacatatgagccccatcacaaatgcaagaaggagtggattctaaaaaggtgtactgcaaaatggttagctgaaaagtacactgagtcatttagggctgatgggaagatgaccattcctagctttgcaaagacagtacaaaaagagtggaacttgactccttcaagaagcaagcttgcaagagctaggaggctggccctaaaagagatatatggtgatgaaatagcccaatacaacttgttgtgggattatggcaatgaactaaggaggtccaatcctgggagttctttctatcttaggttagatgagggcaaatttagtagcttgtacttctcactagatgtatgcaagagaggattcctcagtggttgcaggccaatcatttgtctggatggttgccacatcaagaccaaatttggaggtcaattgttgacagcagttggaattgatcccaatgactgcatataccccattgcaatggctgtggtagaagttgagtctttcagcacatggacatggtttcttgataccttgaagactgaacttgggatagtgaacacctctccatggaccattatgacagacaaacaaaaggtaaccatttga</dnaseqindica>

External Link(s)

NCBI Gene:Os07g0583500, RefSeq:Os07g0583500