Os07g0620300

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Revision as of 08:47, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os07g0620300| Description = Clathrin adaptor complex, medium chain family protein| Version = NM_001066834.1 GI:115473400 GeneID:4343931| Length ...")
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Gene Name

Os07g0620300

Description

Clathrin adaptor complex, medium chain family protein

Version

NM_001066834.1 GI:115473400 GeneID:4343931

Length

4929 bp

Definition

Oryza sativa Japonica Group Os07g0620300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:26301034..26305962

Sequence Coding Region

26301182..26301239,26301383..26301477,26302163..26302366,26302580..26302696,26302821..26302949
,26303328..26303454,26303911..26304014,26304106..26304210,26304304..26304398
,26304511..26304596,26304704..26304766,26304854..26304927,26305606..26305704

Expression

GEO Profiles:Os07g0620300

Genome Context

<gbrowseImage1> name=NC_008400:26301034..26305962 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008400:26301034..26305962 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgatctcgcagttcttcgtgctgtcgcagcgcggcgaccacatcgtcttccgcgactatcgcggggaggtgcccaagggcagcgccgagatcttcttccggaaggtgaagttctggaacgacgacgaggccgaggaggcgccgccggtcttcaatgttgatggcgttaattatatccatgtgaaagtcgcaggactattttttgtggtaactacaatggttaatgtctctccgtccctcctcttggaactcttgcaaaggattgcacgtgttacaaaagattaccttggcgttctaaatgaagattcattgcggaagaatttcattttagtgtatgaattgctcgatgaagtcattgactttggatatccacaaaccacctctaccgaggttctgaagtcatacatattcaatgagccaataatggttgatgctggtcggctgcctccacttggtcctgctgctatgttcatgcaaggcactaagcgtatgcctggtacagctgttacaaaatctgttgttgctaccgaacctggtgggaagaagagggaggaaatttttgttgatatcattgagagaataagtgtgacatttagttcaagtggttacatacttacatctgagattgatggaaccatccaaatgaaaagttaccttactggaaatccagaaattcgtctagctctaaatgaggatttgagcataggaagaactggctcttcttcgtatgattacagaagttcttctggaggaggagctgtcattcttgatgattgcaatttccacgagtcagtacatctggatagttttgacattgacagaactctacatttaataccaccggatggggaattcgctgtaatgaactaccggattactcaagaatttaagccacctttccgtgtgaccgcactaattgaagaagccgggccatctagggctgaagttctattaaaaatacgggcagacttctctgcaaatgtcactgcaaacacaatagtagtacagatgccagtgccatcttacacaatgagggcaagttttgaattggaagctggagcagttggacagacaactgattttaaagaaggatccaggagaattgagtggaatctaaagaagatcgttggtggttctgagcacacccttcgggcaaagctcacattttcccaggagtcacatggaaatctcacaaaggaagctggaccagtaaacatgaatttcactataccgatgtacaatacttcaaagttgcaggttagatatcttcagatagcaaagaaatccaagacatacaacccctataggtgggtgagatacgtaacgcaggctaactcatatgtggctcgtctatga</cdnaseq>

Protein Sequence

<aaseq>MISQFFVLSQRGDHIVFRDYRGEVPKGSAEIFFRKVKFWNDDEA EEAPPVFNVDGVNYIHVKVAGLFFVVTTMVNVSPSLLLELLQRIARVTKDYLGVLNED SLRKNFILVYELLDEVIDFGYPQTTSTEVLKSYIFNEPIMVDAGRLPPLGPAAMFMQG TKRMPGTAVTKSVVATEPGGKKREEIFVDIIERISVTFSSSGYILTSEIDGTIQMKSY LTGNPEIRLALNEDLSIGRTGSSSYDYRSSSGGGAVILDDCNFHESVHLDSFDIDRTL HLIPPDGEFAVMNYRITQEFKPPFRVTALIEEAGPSRAEVLLKIRADFSANVTANTIV VQMPVPSYTMRASFELEAGAVGQTTDFKEGSRRIEWNLKKIVGGSEHTLRAKLTFSQE SHGNLTKEAGPVNMNFTIPMYNTSKLQVRYLQIAKKSKTYNPYRWVRYVTQANSYVAR L</aaseq>

Gene Sequence

<dnaseqindica>149..206#350..444#1130..1333#1547..1663#1788..1916#2295..2421#2878..2981#3073..3177#3271..3365#3478..3563#3671..3733#3821..3894#4573..4671#acttgctctcctgctcgtcgccgcagcggttacgtcacgtcacgtcacagccaggccacgggcgtacgcgcgcgcgcgcgaggcctgagaagcaaggtattgggctgggagcgagggggtggtggcatcgcggtggtggggggtggagatgatctcgcagttcttcgtgctgtcgcagcgcggcgaccacatcgtcttccgcgactgtaagatctggatccccgtccttcttcttcttgttgttttttttttctttactccgtggaatttggcacggtttttgggtgtgatctggtgctgatctggttgggggggattttggatgggtgcgtgtgtggtggggatgcagatcgcggggaggtgcccaagggcagcgccgagatcttcttccggaaggtgaagttctggaacgacgacgaggccgaggaggcgccgccggtcttcgtacgcatccgtgcccttctcttagtcctcttattcgcactttattggtagaaattctgcggtttttagcagtgattttgaggggttttttttcccctcgtttaactgtctaagttgttaatagttcggaacactatggttctgtgaataattagcattagctagcggttgggacaaatcacctgataaaatttgattatgtttgggattgtcgtgtccttcatgtttgattcgtttgatgttagtgatttttcctaaccattatgttaccatttggtagtgggtagtttagctcttgttaatgcgtgattggttaagtgcaaacctaggatataagctttaaatgagctgagattacttagtgtattacttgtgcgatttattttattagcactgaaactatttgactagtggcggtaaccaaattcaagagatggaactttggagcttgtgctgcatattactggattgtgagcggcattacagcttgcagttggttcatgttagttgtttgtgatgcatacactggaaactgttatgtttattaacctgtagaatgccatgaccctagattaaattgaaaaagatggcaggagccatggtgatcctactactcgttctgttctgtttgcatcacgttcccacttgttctcacactggccttttatccattttgtgatggcagaatgttgatggcgttaattatatccatgtgaaagtcgcaggactattttttgtggtaactacaatggttaatgtctctccgtccctcctcttggaactcttgcaaaggattgcacgtgttacaaaagattaccttggcgttctaaatgaagattcattgcggaagaatttcattttagtgtatgaattgctcgatgaagtcattgtaagtactatgcactatttcttcagacaatataacttccaaccctttgtgacctgtattttttggattactagcaaagtctagcgtgtgcttatcagcaaagtagtatggttttgaagtgagtagtacggttcatctgtttttgggaacaattgctatcatcttttggtaccactatatgcgaatatttatggattgaattgtgtaatttaggactttggatatccacaaaccacctctaccgaggttctgaagtcatacatattcaatgagccaataatggttgatgctggtcggctgcctccacttggtcctgctgctatgttcatggtaactctcctggttattatcacatgaaaaaacgggttttgggctactttaacaagcgccgtataagtttccgtggttatcttgtcaatgacatggttccgttgaatttctgtgtcttttgcagcaaggcactaagcgtatgcctggtacagctgttacaaaatctgttgttgctaccgaacctggtgggaagaagagggaggaaatttttgttgatatcattgagagaataagtgtgacatttagttcaagtgtaagtgctgatatataccattcctctgcagattctcttcaataagcatttcaagttgcttttgcttttcttcatacctacttgaaatcctaaatatgtttgtgttgtatatgatggttatgcgtaagtacttcagtatggtagttaactggttatgcccattggaattttaattttctgataccatacatagagctggaactgattgtctgagctgtcaaaatttagtctctcttttgtgtttattcagcttcaacaactaaagggcagcatatctatctttatacttctatagctattatggctatggttctctaatagtatcagtgtaatggagaactaatgcttttgtgctccaatcttctatgcattctgcagggttacatacttacatctgagattgatggaaccatccaaatgaaaagttaccttactggaaatccagaaattcgtctagctctaaatgaggatttgagcataggaagaactggctcttcttcgtatggtacaatacttggcatatcttcctttgtcagctgagtttggaaaatggacttatggttgcataaagaaacatgatatgccatttttcctgtatttctacatcatttccgatcatgtattttgtgtgtgacattcaaaaccacttatgatgacacttatgatgacccccgcaaaaaaaaataaaataaaaatgatgacacttattgtgaaattggacatataatgagttattccatgcacgcatctcaatgttactaccagcttagttcacctatttacattttaaaaatcctactgcattttctaactgaagtttcagtgttcaccgccctgtttttttatgacatgaacttcatgcactgtgttatttcaatcatgacaaacttgttgtgcatgttatctttgtctctgtttacacggtgtggatatcattgatctcacaaaaacaaatatacagattacagaagttcttctggaggaggagctgtcattcttgatgattgcaatttccacgagtcagtacatctggatagttttgacattgacagaactctacatttagtaagtactgatatgatgcttttatttatttttgttatttgttttacttcagataccaccaagattgacatttatattcaccatttaacagataccaccggatggggaattcgctgtaatgaactaccggattactcaagaatttaagccacctttccgtgtgaccgcactaattgaagaagccgggccatctagggtatgtcatgtttgtactgttatcaagtgccaacaaaattatttttttcaattttcatggatttgaactaaacatcttggtatgtgtacccaggctgaagttctattaaaaatacgggcagacttctctgcaaatgtcactgcaaacacaatagtagtacagatgccagtgccatcttacacaatgaggtgagctacagctttatttggtcccttttgtgtttggaattggaaagtgaaacgctgctcctgttagtttgttactattagttgaagagttatattatggattactttgcagggcaagttttgaattggaagctggagcagttggacagacaactgattttaaagaaggatccaggagaattgagtggaatctaaagaaggcaagcaccaacaaacgatttaatctttgctttctttcctttattttctcttccttgtttgttaactagtttgctgtacgctgctaaatcatcttaattttgcacagatcgttggtggttctgagcacacccttcgggcaaagctcacattttcccaggagtcacatggtataattttggattgcagctttcttgtctatgctccaagtgacttctctgttataaaacttatgtcacgcttcttctggaatgcaggaaatctcacaaaggaagctggaccagtaaacatgaatttcactataccgatgtacaatacttcaaagttgcaggtaagggcatctgctacagtatactacctggaatgcgtcaattacccagggatatgctcagatctatacttactcctttaaaagtctccagtggtgctggcagtgaatctgccaccccaccactatttatagttttttggcccctggtattttttatattatggaatagtctaaatatttgattcaaacaagtcaataccatatattcaaacatgcaaacaaatgatactaacatatttgataaaattttttttgtctattgcatattataatatatttttattttatccatagcaaagcttgggcattttgctatttaaggagaaaagaaagaagcccttttacttagcccttttactactacatatgttacctttagagcaagtttaatagtataaccgactactagctccaaattatctatagccaatgtaatagtcaattcatacaatagtttattactatattattaatacctggtcccacctgtcatacacacattacgtcttatagtccgtgttgcagctggctacagatctgtagcccattgctcttctctctcttcctttatctctttaaaatatgtttatagctggtttatagcccgctattgtacttgctcttagtaccaaatgttttggatgcacacaatgaattttaccattttttaacctgcaggttagatatcttcagatagcaaagaaatccaagacatacaacccctataggtgggtgagatacgtaacgcaggctaactcatatgtggctcgtctatgagatagcgatgctttgtatacatctccctctggtcatttccccttttccttgcgctattatcttcgagggacttcaagcaagcttggacagagtgtcatgcattgcattgtaattttatagagcaatcccaaacttaaactcttctcctgcagttaatatctacctagggcaatttatttttccttgtgtaatatgcaggagatacatgatcatatttttgtatgctgtgaaaatgaatgaagttattgttcatcacat</dnaseqindica>

External Link(s)

NCBI Gene:Os07g0620300, RefSeq:Os07g0620300