Os07g0626200

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Revision as of 08:47, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os07g0626200| Description = DNA-binding SAP domain containing protein| Version = NM_001066869.1 GI:115473470 GeneID:4343967| Length = 4880 bp| ...")
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Gene Name

Os07g0626200

Description

DNA-binding SAP domain containing protein

Version

NM_001066869.1 GI:115473470 GeneID:4343967

Length

4880 bp

Definition

Oryza sativa Japonica Group Os07g0626200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:26591765..26596644

Sequence Coding Region

26592983..26593538,26593881..26594891,26595239..26595433,26595514..26595665,26595884..26596348

Expression

GEO Profiles:Os07g0626200

Genome Context

<gbrowseImage1> name=NC_008400:26591765..26596644 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008400:26591765..26596644 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcaacgtgtcctgtgctgaatgaccgaccaattgatgagtggaaggttactgaattgaaggatgagctccgtaggagggatctatctattaaaggtttgaaggatgatcttgtgaagaggcttgctgaggcccttcagggggaggttattgatggcggggaagaaacagtcaatggaactccccctgtggagaatcagacacaagacggagctcttgttttagatgatgcatctggtttccaggcttcagcagaacaaaatgttgatgaaggccctgctgaggttgctgcaaagaatgaaggccttgtctctgttatagaagctagtacagagggcggaactcttgttttagatgatggatctggtttccaggcttcaacggaacaaaatgttgatgaaggtcctgctgaggttgctgcaaagaatgaaggccttgcctctgttacagaagctagtacagaggacggaactcttgttttagctgatgcatctggtatccaggcttcaacggaacaaaatgttgatgaaggtccttctgaggttgctgcaaagaatgataccagtactaataccaagttggaggaatcatctgctaaaggtgaaccatgtgtcagtataggctgtgagattctagaacaggaaacgaaatcatcacatcttgatgttattttgtcacatgctgacgctgttgcaagtgcagaggaaatgattacagagagcctgattcttaagaaagattccaatgagaatgatttaatgtatgagaaggaccaaaaggattctgaccacataagcactgactgcaaacccgagcagtctggaccaaaggatcaggtatctgaagtcaaccaagatctagagtctcaaattaagtgtgtgtcaatttctcctgatgatatactagtcaataaaaacgacaatgtagaaggcaacatgaacgctgacaattttgatttaggactagagtctaagcaggatattgtcaagccatcatccagcaatccctcctccgttggtgatgatttgcagacaccagatgatgacaaagagatatctctgatcgacatgtctctgcaagatactgatatgagcttgaaaaagaaagaaggcagtcctgatagtatttatcctgaaaaactaaatttggataggagttcaggagatgaatcaatggaggaggatgcgatggaaactaagcacatggattccaaaacaatacctgattatctcgaaggaaagagtgaggtcaccttagagcatgtgagttcaggagatgaatcaatggaggaggatgtgatggaaactaagcacgtggattccaatacaaaagttgaacatgtgagttcaggagatgaatcaatggaggaggatgtgatggaaactaagcacgtggattccaatacaaaacctgattatctcgaaggaaagaatgatgtcaccttagagcatgtggtaaaagaggtgatcctccttgatactgtcactgagggttcatctgtagatcaaaaggaagctataagtcaagagaagccagtaatgccgactgaaaagaggaaagctgaagatcaagaagttgttgcaaataatgagccaatcaaacgtcagcgcctatggaatgtggatgatgtcaaacctgagcaagcaacttccaaactaagtggttctgatgcttctaaagttgtacacccgcctgctcgaagacgttcttttggcaggtctgattcaacagcacgtggaaattctccgaaggagaggatggtaccaccgcctcagaaacctgcaacaacttccttgagaatcgatcgatttgtgcgcccgttcactttgaaagctgtgcaagagcttcttggtaaaactggatctgtttgtagcttttggatggatcctatcaagactcattgctatgtcacattctcttcggtggaggaagctctggctaccaggaatgctgtttacaatctccaatggcctccaaacaatggcagttccttagttgctgaattcgttgatccacatgaggtgaaggccaaacttgaaccccctcccccacctccagcacctatcaaccccacagcagctacagcaccttcccaccaatccaaggccaaccaaatcatgcctcctcatgctgctgatacatcaagggggctattacccacaccaccagcacttgctaggcttccaaccttcaacaacgcaccagcgagggagatgcttccgcccgctccaaagaacccagaaccacctgtggtggtgactcttgatgatctctttaggaagacacaggcctctccgaggatctactacatgcctgtttcagaagaggtggtatctgccaagcttgcagcacgcggcaaagggaagaaggcagcgtag</cdnaseq>

Protein Sequence

<aaseq>MSTCPVLNDRPIDEWKVTELKDELRRRDLSIKGLKDDLVKRLAE ALQGEVIDGGEETVNGTPPVENQTQDGALVLDDASGFQASAEQNVDEGPAEVAAKNEG LVSVIEASTEGGTLVLDDGSGFQASTEQNVDEGPAEVAAKNEGLASVTEASTEDGTLV LADASGIQASTEQNVDEGPSEVAAKNDTSTNTKLEESSAKGEPCVSIGCEILEQETKS SHLDVILSHADAVASAEEMITESLILKKDSNENDLMYEKDQKDSDHISTDCKPEQSGP KDQVSEVNQDLESQIKCVSISPDDILVNKNDNVEGNMNADNFDLGLESKQDIVKPSSS NPSSVGDDLQTPDDDKEISLIDMSLQDTDMSLKKKEGSPDSIYPEKLNLDRSSGDESM EEDAMETKHMDSKTIPDYLEGKSEVTLEHVSSGDESMEEDVMETKHVDSNTKVEHVSS GDESMEEDVMETKHVDSNTKPDYLEGKNDVTLEHVVKEVILLDTVTEGSSVDQKEAIS QEKPVMPTEKRKAEDQEVVANNEPIKRQRLWNVDDVKPEQATSKLSGSDASKVVHPPA RRRSFGRSDSTARGNSPKERMVPPPQKPATTSLRIDRFVRPFTLKAVQELLGKTGSVC SFWMDPIKTHCYVTFSSVEEALATRNAVYNLQWPPNNGSSLVAEFVDPHEVKAKLEPP PPPPAPINPTAATAPSHQSKANQIMPPHAADTSRGLLPTPPALARLPTFNNAPAREML PPAPKNPEPPVVVTLDDLFRKTQASPRIYYMPVSEEVVSAKLAARGKGKKAA</aaseq>

Gene Sequence

<dnaseqindica>1219..1774#2117..3127#3475..3669#3750..3901#4120..4584#actgcctcctgagtcctgactccccccgagcgccagtctctctctctctctctctctctctctctctcctctcgcacgcctcggcggagcggagcggagagcaacaaaagcgcaaaaaccctcgtagagatcgaaaccgccgcggcggggtgggatcgcgtgttccgatcgtgcggaggcctcccgctcttatcgagaggctttcgatccgcttgcgattttttttctgggatttttttggtgcatttttttcggtttttttgttttccatttcaggtggcgcgtgggggatcggtggattcctggagttgctggtcggtggaaatcgtttctcttcgtgtgcgcgtttgcgtttgttctggggtttttgttttgggtggtgggttttgatccggttgctgcgggcttgtaggttggattttgcggtttgggagaaaggtggtgattcgctccgtacactgttgagatttctctgtgactctgcgttggtgttgttgctaggtgagctgcgagcttccgtccgtttgcgatgtgccgatgtttagggttttacttgagggtccatttgatattccttattatgttttagagcacaatctagggttctagactggcatcattacgctgcatgtaaatgtattatcaagttgggggttagggatttaggtggggatcacttgtgattggggttgaaacctgaaagtaatcggagacgtctgcaatgcgttatgtgtatatgtgtttcgggtatgctgctaaagtgaagtctctaactgcctcatgttgttttgcatgttccttgtgtgcggaaatgtcgtatgtaatgttttcatgcttaatataggaattgttctcagctgtttctcccttgtacttagcatacagctcgtatcaaatgtaaaattctgttttgacatggagcatatcagtataggaatttttcaccagaatctgggagttggatcttttgaagaacaaattttgtctgcatataaactgctacttcatcagaattcctaatgcaagaatgcatatacatggcatgacttaactatatacatacttgtgcagtttcaactgaagattacagttattcagtctgttcttgtttcattataactgtaatttccagttctacatgttagaaggctgcacattgttcctatttaattgtatagccactttgattgtgataagtgtgaatttttggcagtcacaatgtcaacgtgtcctgtgctgaatgaccgaccaattgatgagtggaaggttactgaattgaaggatgagctccgtaggagggatctatctattaaaggtttgaaggatgatcttgtgaagaggcttgctgaggcccttcagggggaggttattgatggcggggaagaaacagtcaatggaactccccctgtggagaatcagacacaagacggagctcttgttttagatgatgcatctggtttccaggcttcagcagaacaaaatgttgatgaaggccctgctgaggttgctgcaaagaatgaaggccttgtctctgttatagaagctagtacagagggcggaactcttgttttagatgatggatctggtttccaggcttcaacggaacaaaatgttgatgaaggtcctgctgaggttgctgcaaagaatgaaggccttgcctctgttacagaagctagtacagaggacggaactcttgttttagctgatgcatctggtatccaggcttcaacggaacaaaatgttgatgaaggtccttctgaggttgctgcaaagaatgaaggccttgtctctgttacagaagctagtaaagatagtgcaattgctactacagaagttagtcaggaagcagttgttgccgctgcagaggttagtccggaggctctagttgctgttacagaggtcagtgaggcccctctagttgatgtggccggaactaatgaaaattctctaggtgatgcagaagcaactaaagaaggtgatccagaatctgttccaagtgacagtaatgtggtgaaggaagtatgttcacatgctgaaattcattgtgaggtcattgcagagaagactccagacaatggcagcagcaagaaaatgactgttgatgacatatcatctgatgataccagtactaataccaagttggaggaatcatctgctaaaggtgaaccatgtgtcagtataggctgtgagattctagaacaggaaacgaaatcatcacatcttgatgttattttgtcacatgctgacgctgttgcaagtgcagaggaaatgattacagagagcctgattcttaagaaagattccaatgagaatgatttaatgtatgagaaggaccaaaaggattctgaccacataagcactgactgcaaacccgagcagtctggaccaaaggatcaggtatctgaagtcaaccaagatctagagtctcaaattaagtgtgtgtcaatttctcctgatgatatactagtcaataaaaacgacaatgtagaaggcaacatgaacgctgacaattttgatttaggactagagtctaagcaggatattgtcaagccatcatccagcaatccctcctccgttggtgatgatttgcagacaccagatgatgacaaagagatatctctgatcgacatgtctctgcaagatactgatatgagcttgaaaaagaaagaaggcagtcctgatagtatttatcctgaaaaactaaatttggataggagttcaggagatgaatcaatggaggaggatgcgatggaaactaagcacatggattccaaaacaatacctgattatctcgaaggaaagagtgaggtcaccttagagcatgtgagttcaggagatgaatcaatggaggaggatgtgatggaaactaagcacgtggattccaatacaaaagttgaacatgtgagttcaggagatgaatcaatggaggaggatgtgatggaaactaagcacgtggattccaatacaaaacctgattatctcgaaggaaagaatgatgtcaccttagagcatgtggtaaaagaggtgatcctccttgatactgtcactgagggttcatctgtagatcaaaaggaagctataagtcaagagaagccagtaatgccgactgaaaagaggaaagctgaaggtctgtcttcatccccttacagtgttcagtcatttttgcagtgttatgatgacacctttctgcttttgtttcatttgtttttttctatgctttgatgcacattatctgagatctgtaagtgtccggagtgaagtgcattatatctactgtttgatactagtatgttctatggaacaattgtaccctttttatgctcttttacattttctgtgtatacacttttttaaaattacttaagtaagatttctcatcataatttcacatgcttcagtcctcaagttgataataattgatataaggttgaaatggtctctattttttgttttaactcactgttgaatgcacagatcaagaagttgttgcaaataatgagccaatcaaacgtcagcgcctatggaatgtggatgatgtcaaacctgagcaagcaacttccaaactaagtggttctgatgcttctaaagttgtacacccgcctgctcgaagacgttcttttggcaggtctgattcaacagcacgtggaaattctccgaaggagaggatgggtgaggtttctcttcctttttagtaaagtatatacttcaccattgttaccaaattcatctcttgcctattcatatttcagtaccaccgcctcagaaacctgcaacaacttccttgagaatcgatcgatttgtgcgcccgttcactttgaaagctgtgcaagagcttcttggtaaaactggatctgtttgtagcttttggatggatcctatcaagactcattgctatgtcacagtatgtccttaacttgcaaatatattatgttacatctgcagaatattatcaaaagtgcattcatgcttataaattactatggcatttccacactgcattctttttcagtataattacttcaggcttcaaagcatttcatcatattgctgtctgtactctttgtaatttgcaacggtataattgtattgatttgtcttcttgtccacactgattttcagttctcttcggtggaggaagctctggctaccaggaatgctgtttacaatctccaatggcctccaaacaatggcagttccttagttgctgaattcgttgatccacatgaggtgaaggccaaacttgaaccccctcccccacctccagcacctatcaaccccacagcagctacagcaccttcccaccaatccaaggccaaccaaatcatgcctcctcatgctgctgatacatcaagggggctattacccacaccaccagcacttgctaggcttccaaccttcaacaacgcaccagcgagggagatgcttccgcccgctccaaagaacccagaaccacctgtggtggtgactcttgatgatctctttaggaagacacaggcctctccgaggatctactacatgcctgtttcagaagaggtggtatctgccaagcttgcagcacgcggcaaagggaagaaggcagcgtagggtggctcaaatttgctgctgctgctgctgccatgagtggtacaatttgacacttgaagaggcttttgcaagggttaggtcttgagagccgagaaggtcattttggttgtacatacaactaggtgtagttttctgcatctccgaaactgttagctgttgctcgcccatgccgatctggattgtatgttaattgtgcaccttttgatcgatggagacgatgcttaccttcaatgttgatgaactgggggaatgcatatgtgctaagtcgcagcatttcccccctaaactcgtcgcgc</dnaseqindica>

External Link(s)

NCBI Gene:Os07g0626200, RefSeq:Os07g0626200