Os07g0681600

From RiceWiki
Revision as of 08:53, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os07g0681600| Description = ATP-dependent DNA helicase RecQ family protein| Version = NM_001067190.1 GI:115474112 GeneID:4344306| Length = 7172 ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os07g0681600

Description

ATP-dependent DNA helicase RecQ family protein

Version

NM_001067190.1 GI:115474112 GeneID:4344306

Length

7172 bp

Definition

Oryza sativa Japonica Group Os07g0681600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:29561673..29568844

Sequence Coding Region

29561808..29561823,29561944..29562058,29562503..29562578,29562677..29562819,29563034..29563120
,29563229..29563312,29563961..29564168,29564258..29564343,29564732..29564963
,29565088..29565208,29565347..29565483,29565823..29565931,29566488..29566530
,29566682..29566853,29566929..29566999,29567102..29567195,29567345..29567557
,29567632..29567838,29568003..29568323,29568401..29568526

Expression

GEO Profiles:Os07g0681600

Genome Context

<gbrowseImage1> name=NC_008400:29561673..29568844 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008400:29561673..29568844 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaggcagctctgaagacgtatttcggcttctcggggttccgttcgtaccagcgggagatcatacagaaggtcctggaaggccgggattgcttggtcgtcatggccaccggcagcggcaagtcgatctgttatcaaatcccaccacttgttacaaagaagacagctgttgttgtcagccctcttctgtcattgatgcaagaccaggtcatgagcttaaagcagcatggcgtgaagtctgaataccttggcagcacccaaacagacatctctgttagcggtcaggctgaaaaaggcgcattcgatgttctgtacatgacaccagagaaagctgtctcacttccttcaaggttttggagtaacttgcaggctgccggaatctgcttgttggctgtcgatgaagcacactgcatatcagaatggggccacgatttcagaacggagtacaaacagttgcatatgttgcgtgaccttctagtgggtgttccctttgtcgctttaactgcaacagccacacaaagggtacgtggagacattgccacttccttgaccctgcgcattcctcacattgtggtaggatcatttgatcgtcctaaccttttctatggcgtgaaatcatgcaaccggtctatggcctttatcaatgaacttgtgaaggatgtctcaaagaactgtactgtgggtggctcaacaataatatactgtactaccatccgagagactgaacaggtgcatgaggcattggttgctgctggaatcaagtccagcatttaccatggtagaatgggaaataaagctagagaggaatcacatagatcgtttgttagagatgaagtacttgtgatggtggctaccattgcttttggaatgggaatcgacaagccagatgttagatgtgtaatacattatggatgtccaaagagcctggaatcctactaccaggaaagtgggcgttgtggaagagatggactgccttcagtctgctggctatattaccaaagaagtgattttatgaaatctgatttctattgtgctgaagctaaaagtcaaactcatcgaaaagccatcatggagtccttcatggcagcacaaaaatattgcctgcttgctacatgtcacagaaaattcttgctgcagtactttggcgaagaccgcaccactgactgtggtaattgtgaaaattgcacaaggacaaaaaacgagagggatttgtcaaaagaatccttcttgttgctgtcctgcattaagtcctgtggtggacggtggggccttaatttgcctattgatgttctccgtggatcacgtgtcaagaaaatagttgaaaacaattttgataaacttccattgcatgggcggggaaaagactatccaccaaactggtggaaagctcttggcggcctgcttttagcacatgattatttgaaggagactgtccatgatacatttagatccatcagtgttagtcctaatgggtacaagtttctatccactgctgataaaggggatggagcatcgctgtttttacagctgactgcagagatgattgagctagaggggcatggtggttcacagtgtaaagaagagggcttaaatcctttgggcccatcagaatctgaaaaaatttctgaggatgaattgaaaatctaccaagtactcttgaatgtcaggatgcaacttgcacaagatattggaacggcgccgtacgctatatgtggtgatcagacactaagaaactttgcgaagttcaggcctagcaccatagctaggttggctaatattgatggtgttaaccagcacttcatctcgcattacggcagtattttcatccaaaatatcacacaattggcaaaagaattgaatcttcctgtggatgatttatcggctgtagaaagtatacctgctgctccaaaacctacacaaaataatctcccaaggagtttgggtggcgcgaaattttgttcatgggaattgtggcagaaaatgaagttttcgttccagaaagttgcgcattaccgcagagcagtaccaataaaagagaaaacagtcatttcctacatacttgatgctgctcgagatggatgtgagatggactggagtaggttttgtgaggaggtaggacttacacatgagatagcctcacagatccgtcttgccattacaaagcttggatcacatgaaaagttgaagccaatcaaagatgaacttccagaaaatgtaacttatgagatgatccagacattcttggcaattgagggacttggattgtcggatcaagtttttggtactgttcctactgatgggatccagtccaagacatcagaggcaccaaagaccacctccaatggaggtgaagttggcgcagatgtttgtgatgcaagccctttgacaaggagaggccaaactgatgggtcattgatttgtggtgatgagccagcaagtaaactacaaaagatagacgggcaaggtgtaaattctactgccgcaatcggtgccacagaggatgcaatactagaactggttgaaggacgcaatggggtttcgttggaggatgttgtcaagcacttcaatgggtcgaaaagagaatgtgtcgtcgagatgttggacaatctggaaggcaattttctggtgtacaagaagaatggctgctacatgattatgtga</cdnaseq>

Protein Sequence

<aaseq>MEAALKTYFGFSGFRSYQREIIQKVLEGRDCLVVMATGSGKSIC YQIPPLVTKKTAVVVSPLLSLMQDQVMSLKQHGVKSEYLGSTQTDISVSGQAEKGAFD VLYMTPEKAVSLPSRFWSNLQAAGICLLAVDEAHCISEWGHDFRTEYKQLHMLRDLLV GVPFVALTATATQRVRGDIATSLTLRIPHIVVGSFDRPNLFYGVKSCNRSMAFINELV KDVSKNCTVGGSTIIYCTTIRETEQVHEALVAAGIKSSIYHGRMGNKAREESHRSFVR DEVLVMVATIAFGMGIDKPDVRCVIHYGCPKSLESYYQESGRCGRDGLPSVCWLYYQR SDFMKSDFYCAEAKSQTHRKAIMESFMAAQKYCLLATCHRKFLLQYFGEDRTTDCGNC ENCTRTKNERDLSKESFLLLSCIKSCGGRWGLNLPIDVLRGSRVKKIVENNFDKLPLH GRGKDYPPNWWKALGGLLLAHDYLKETVHDTFRSISVSPNGYKFLSTADKGDGASLFL QLTAEMIELEGHGGSQCKEEGLNPLGPSESEKISEDELKIYQVLLNVRMQLAQDIGTA PYAICGDQTLRNFAKFRPSTIARLANIDGVNQHFISHYGSIFIQNITQLAKELNLPVD DLSAVESIPAAPKPTQNNLPRSLGGAKFCSWELWQKMKFSFQKVAHYRRAVPIKEKTV ISYILDAARDGCEMDWSRFCEEVGLTHEIASQIRLAITKLGSHEKLKPIKDELPENVT YEMIQTFLAIEGLGLSDQVFGTVPTDGIQSKTSEAPKTTSNGGEVGADVCDASPLTRR GQTDGSLICGDEPASKLQKIDGQGVNSTAAIGATEDAILELVEGRNGVSLEDVVKHFN GSKRECVVEMLDNLEGNFLVYKKNGCYMIM</aaseq>

Gene Sequence

<dnaseqindica>136..151#272..386#831..906#1005..1147#1362..1448#1557..1640#2289..2496#2586..2671#3060..3291#3416..3536#3675..3811#4151..4259#4816..4858#5010..5181#5257..5327#5430..5523#5673..5885#5960..6166#6331..6651#6729..6854#gtcctcccattccccttccactccaccccagccgcctcgcctcgccttcttcttcccgaagccgctcaatcgaactcccctcgccgaagccgacgcgggggcgcgaccgcgcgcgcgagccccataccacgtacgatggaggcagctctgaaggcaagtgctcgttgccctaatggcgttcccattccctaataaaccctagccccgcgatcccgcgggctaaaaccctatctggatgcttgaactggggcgtttctgctttttttttttcagacgtatttcggcttctcggggttccgttcgtaccagcgggagatcatacagaaggtcctggaaggccgggattgcttggtcgtcatggccaccggcagcggcaagtcgatctggtgagttagttccctgtggggaaaattttgctgtggctgttcccttccttcgtgcggtgccactgtttgctagctatcgtggatatttctatggatgtgcaagttagatcgttccagtgatgaaatctaaattggaatgctgcatttggttgatatatgggttgttgtatcgccgtgtaatgttcatattggcgtttgtgtaatttgttgattgggcaggtaaaacattctttcagaattgggtttgtcttatttctagtgtgcatttatgctatcttagaaaaataaaacataatgattttgatagtaatatagagcctatgagctatattaagtagttaagttcatcttcattgggtatacacatacataaatcatctaattcttcttccaggaaatcattggattagttattgattgctaattgatttctttttattgcagttatcaaatcccaccacttgttacaaagaagacagctgttgttgtcagccctcttctgtcattgatgcaagaccaggtatggttcaaatactcattgcagatcattattgctttgatctttgttgattgtttttacaagaaaacataatcgtgggtcttatctacttcaaataggtcatgagcttaaagcagcatggcgtgaagtctgaataccttggcagcacccaaacagacatctctgttagcggtcaggctgaaaaaggcgcattcgatgttctgtacatgacaccagagaaagctgtctcacttccttcaaggtaaaaggcagactctagtagtcttttgataaactctagtcacatccactttgtgattatgcgtggttagtctaaaaggaatagttgattatgtatttgcttgtctggaaatgggaggcatgctcattcaatttcatggacacaacaaatcactcatgggtttgataacatagcattcggtctattgatttgacattctaaatcttcttcccaggttttggagtaacttgcaggctgccggaatctgcttgttggctgtcgatgaagcacactgcatatcagaatggggccacgatttcaggttattcatactgcctaccaatttgtgctcccacccttaaaactcacaccatccagtttaataaatagctgaccttttcttgattgcaattctctttcttgtttgcagaacggagtacaaacagttgcatatgttgcgtgaccttctagtgggtgttccctttgtcgctttaactgcaacagccacacaaaggtatagatgttgcactattagttgtttccctgcttggtaaaattttcgcccattaataatatcatattattatgtttcttctctatttaaagtaagaatagtgagagtgtatagctgtatgttttttagaggggtataattatatctctattggcacaatactccacatatcatagaagctggaaatggcttggaaaacttgtaacttacctccattattgtgttcatatgtaaactgacagcatgtctgaaactgtgaatcaagtgatagagtgggggctgcgcggtagctggtgactttgggagaaatgtcattttccatttcacattggcactaaattttggtcttgatgcgtgtaaaatatattgtagacagaaatgcagggatttgattatactcccttctgttcatgaaaccatgctgttttggacactgacaagttccccaaaacgtaactttgaccactaatttctattgtaataaaatatattgatgctcattcttttcaaaatagacatgttcacttgttatagcctcgtaggttgcgttacctttgtttacagtggctaattctttttttcccttccaatcaccaaatatatagtgccatataatttttttttgaccagtgccatataattttgtagggtacgtggagacattgccacttccttgaccctgcgcattcctcacattgtggtaggatcatttgatcgtcctaaccttttctatggcgtgaaatcatgcaaccggtctatggcctttatcaatgaacttgtgaaggatgtctcaaagaactgtactgtgggtggctcaacaataatatactgtactaccatccgagagactgaacaggtttacagcttatggtatcatgcatttacgtatttttgaactttcgtaataggtgcacatgtgatgacttgtaagccgttttctttcaggtgcatgaggcattggttgctgctggaatcaagtccagcatttaccatggtagaatgggaaataaagctagagaggaatcacataggtatatcatctactttaatttctttgtgcacatttcattatgctttccactttactccctttttgtttgcataaagaatgatttgcataattgttttgttggctacggtttgcataactgtattaaattttattgatcgtgccacaattttcatgaggaaaaacgaacatctatgaatattgcagtgctataatttgatctttaatgtttgtagaaatattggcattctgttacgtatgcactagatcatgaagttattagactagaaagatatttagacagatgaaatgagtagttaatacctttcaatttataatatgcatgctgcctttgcaatattggtctggtacaataggggctcatcataatttatgcttctcctttacagatcgtttgttagagatgaagtacttgtgatggtggctaccattgcttttggaatgggaatcgacaagccagatgttagatgtgtaatacattatggatgtccaaagagcctggaatcctactaccaggaaagtgggcgttgtggaagagatggactgccttcagtctgctggctatattaccaaagaagtgattttatgaaatctgatttctattgtgctgaagctaaaagtgtatgtgaatattatgtgcatcgtatctctgttcatgccaaagtgatatatcttacatatttgcagcctagttctttcagttgcttactattttagtgtctcatatttttttggtcactgatagcaaactcatcgaaaagccatcatggagtccttcatggcagcacaaaaatattgcctgcttgctacatgtcacagaaaattcttgctgcagtactttggcgaagaccgcaccactgactgtggtaagtatatatgttacatttaagagtcagtttgaactcatctagtaatgttttccatttaaaaagagtaagatatattcgagtcttatttcaactgctagtggctcattggtttttgacatatctcttgatttgcaggtaattgtgaaaattgcacaaggacaaaaaacgagagggatttgtcaaaagaatccttcttgttgctgtcctgcattaagtcctgtggtggacggtggggccttaatttgcctattgatgttctccgtggatcacgtgtatggtttctatcctgatgtttgtgatttttgccagcttgtgacataaattggccattagcacttgattggataagatcacctgtgtgctgataatgtttttgggaacaaagatcaatgtgaatagaatatttcaaggaatgtatatttaggtcttatattttctgcactatcctggtgatcgttcaagcttttcataatcacaaattagttcattataagataataagatataagtgatacaactaataatttttgaaaaaaataccttagccttgagcagtagtaacaattttgtaaaggattatgtttcatggtaagtattttctcattttgtaggtcaagaaaatagttgaaaacaattttgataaacttccattgcatgggcggggaaaagactatccaccaaactggtggaaagctcttggcggcctgcttttagcacatggtaccatcgtatgcctctctctacatatttttagtcattttcttgtgcaagctaagatacatgttctgtatgctgacttgaagttttgtacatatgtacagtgtcgttttcttggagaaaataaatggttgcatttttttaaaataatagtatcaataaacattgtgatgctgcagttcattcttttagtaaaagtagtgtttttcatgaccttaggtcctcgatcatatggcacggatgcaaacagcatattttgtacagagtaggcaccataatagctcatttcatctgaccctttttttgggatacccttcttctcgtataccttcattcctagagaccttttttttagagctcaagatctgtatttttctaccatgtttatttcttaaattgtctcttagcactgaaattcagatttcggagtatcgttttgtcaatgctgtactgttaattaatggctacagtgagtgaatttattcatcaggtgtcacaacaatttgtcctgtctttcattgtcactttgatttgttatttctttttattctgtgtgcagattatttgaaggagactgtccatgatacatttagatccatcaggtgctgtgctgactattttctttttcactgcataagataatattctacttgttctattttgctagctcatttcgaatttattgactccagttaacccaagcatgaatgctcaaacagccacaactcactgattccttgtgtctatgttcagtgttagtcctaatgggtacaagtttctatccactgctgataaaggggatggagcatcgctgtttttacagctgactgcagagatgattgagctagaggggcatggtggttcacagtgtaaagaagagggcttaaatcctttgggcccatcagaatctgaaaaaatttctgaggtaagtttctcagaggaattatttgtaaaattcattattttagagttctttagtctcattttggatctctttcaggatgaattgaaaatctaccaagtactcttgaatgtcaggatgcaacttgcacaagatattggaacggcgccgtgagttaaatacttaaatgttgacaacaataggtttaggtttctaggctctttacttattggagcaacactgaattgaatctctttaatccattatttcaggtacgctatatgtggtgatcagacactaagaaactttgcgaagttcaggcctagcaccatagctaggttggctaatattgatggtgttaaccaggtatcacttcagaaaataatagtagctaacacacttttatgccataacacagagcactaaacttttttgcggtgcaccctactggaaaatacgacggatgtgatcatattttgtcttaatactcataatgtccgacctttggttttcagcacttcatctcgcattacggcagtattttcatccaaaatatcacacaattggcaaaagaattgaatcttcctgtggatgatttatcggctgtagaaagtatacctgctgctccaaaacctacacaaaataatctcccaaggagtttgggtggcgcgaaattttgttcatgggaattgtggcagaaaatgaagttttcgttccagaaagttgcggtgagttgcccttgtttttgtttgctatagatccatttggtaagttcactgcttaacatcctggtttattctagcattaccgcagagcagtaccaataaaagagaaaacagtcatttcctacatacttgatgctgctcgagatggatgtgagatggactggagtaggttttgtgaggaggtaggacttacacatgagatagcctcacagatccgtcttgccattacaaagcttggatcacatgaaaagttgaagccaatcaaagatgaacttccagaaaatgtaacccttcctccatgcatgattagactactgttgttaatatctaatagatctgttgcatcaacaaacaactgcttcttatgcactgccaagttagatattagttcatccaaagcgttcccaaggcctaatttacctggcaaaatgcaacatgatacttgcaggtaacttatgagatgatccagacattcttggcaattgagggacttggattgtcggatcaagtttttggtactgttcctactgatgggatccagtccaagacatcagaggcaccaaagaccacctccaatggaggtgaagttggcgcagatgtttgtgatgcaagccctttgacaaggagaggccaaactgatgggtcattgatttgtggtgatgagccagcaagtaaactacaaaagatagacgggcaaggtgtaaattctactgccgcaatcggtgccacagaggatgcaatactagaactggttgaaggacgcaatggggtaagacatcttttttttctgaattttcttcgattggaattcatgttgttcctcgttgatgatcttagttgttgcaggtttcgttggaggatgttgtcaagcacttcaatgggtcgaaaagagaatgtgtcgtcgagatgttggacaatctggaaggcaattttctggtgtacaagaagaatggctgctacatgattatgtgaaattaaagatctgaaggaatgttaccagttggttgtcaatgctagtaaccccatatctaggaacatatacggtctcaaatgatgtatatataaaatttagtggtaatgagtgtaggcttctttccctctttatccgtatgaaaaattcacctgttcatcactaacaactgatctttagttcattcagttttttctgcttgttcagagtttagaaactagtgccgtttggccttgaaggatcatcatatccagtgaccctgattcgttgtagaagaatcagagtctgctcctagcctcaaatatgatcaagtttttttc</dnaseqindica>

External Link(s)

NCBI Gene:Os07g0681600, RefSeq:Os07g0681600